{"id":"https://openalex.org/W2170492371","doi":"https://doi.org/10.1109/iembs.2005.1617071","title":"Multithreaded Multiple Sequence Alignments","display_name":"Multithreaded Multiple Sequence Alignments","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W2170492371","doi":"https://doi.org/10.1109/iembs.2005.1617071","mag":"2170492371","pmid":"https://pubmed.ncbi.nlm.nih.gov/17282840"},"language":"en","primary_location":{"id":"doi:10.1109/iembs.2005.1617071","doi":"https://doi.org/10.1109/iembs.2005.1617071","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iembs.2005.1617071","pdf_url":null,"source":{"id":"https://openalex.org/S4363608786","display_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","issn_l":"2375-7477","issn":["2375-7477"],"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":["doyens","jufo-1","ki-jl-1","medline","russia-white-list-3"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2005 IEEE Engineering in Medicine and Biology 27th Annual Conference","raw_type":"proceedings-article"},"volume":null,"type":"conference-paper","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020202801","display_name":"J. Bai","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I151934421","display_name":"University of Northern British Columbia","ror":"https://ror.org/025wzwv46","country_code":"CA","type":"education","lineage":["https://openalex.org/I151934421"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"J. Bai","raw_affiliation_strings":["Computer Science, UNBC, Canada. bai@unbc.ca","Computer Science, UNBC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science, UNBC, Canada. bai@unbc.ca","institution_ids":["https://openalex.org/I151934421"]},{"raw_affiliation_string":"Computer Science, UNBC, Canada","institution_ids":["https://openalex.org/I151934421"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008628430","display_name":"Siamak Rezaei","orcid":"https://orcid.org/0009-0009-9737-3674","observed_orcids":["https://orcid.org/0009-0009-9737-3674"]},"institutions":[{"id":"https://openalex.org/I151934421","display_name":"University of Northern British Columbia","ror":"https://ror.org/025wzwv46","country_code":"CA","type":"education","lineage":["https://openalex.org/I151934421"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"S. Rezaei","raw_affiliation_strings":["Computer Science, UNBC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science, UNBC, Canada","institution_ids":["https://openalex.org/I151934421"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I151934421"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2005","issue":null,"first_page":"2863","last_page":"2866"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9824000000953674,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9824000000953674,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.006300000008195639,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.00419999985024333,"subfield":{"id":"https://openalex.org/subfields/2614","display_name":"Theoretical Computer Science"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"multiple sequence alignment","score":0.9369999766349792},{"id":"https://openalex.org/keywords/multithreading","display_name":"multithreading","score":0.8489999771118164},{"id":"https://openalex.org/keywords/progressive-alignment","display_name":"progressive alignment","score":0.8539999723434448},{"id":"https://openalex.org/keywords/guide-tree","display_name":"guide tree","score":0.8069999814033508},{"id":"https://openalex.org/keywords/alignment-sensitivity","display_name":"alignment sensitivity","score":0.9259999990463257},{"id":"https://openalex.org/keywords/cut-point-selection","display_name":"cut-point selection","score":0.6100000143051147}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7858417630195618},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.7748969793319702},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.7537930011749268},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.6988927125930786},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5568792223930359},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.5098280310630798},{"id":"https://openalex.org/C102392041","wikidata":"https://www.wikidata.org/wiki/Q592860","display_name":"Sliding window protocol","level":3,"score":0.44700175523757935},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.42810124158859253},{"id":"https://openalex.org/C21200559","wikidata":"https://www.wikidata.org/wiki/Q7451068","display_name":"Sensitivity (control systems)","level":2,"score":0.4224385619163513},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.40122467279434204},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.39204925298690796},{"id":"https://openalex.org/C2778751112","wikidata":"https://www.wikidata.org/wiki/Q835016","display_name":"Window (computing)","level":2,"score":0.335477352142334},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.2950446307659149},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2284727394580841},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1234528124332428},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/iembs.2005.1617071","doi":"https://doi.org/10.1109/iembs.2005.1617071","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iembs.2005.1617071","pdf_url":null,"source":{"id":"https://openalex.org/S4363608786","display_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","issn_l":"2375-7477","issn":["2375-7477"],"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":["doyens","jufo-1","ki-jl-1","medline","russia-white-list-3"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2005 IEEE Engineering in Medicine and Biology 27th Annual Conference","raw_type":"proceedings-article"},{"id":"pmid:17282840","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17282840","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":5,"referenced_works":["https://openalex.org/W1543636183","https://openalex.org/W2106882534","https://openalex.org/W2128613007","https://openalex.org/W2138113666","https://openalex.org/W2141411672"],"related_works":["https://openalex.org/W2062604141","https://openalex.org/W1924341312","https://openalex.org/W3140628377","https://openalex.org/W2742159652","https://openalex.org/W817894302","https://openalex.org/W1888761835","https://openalex.org/W4377019635","https://openalex.org/W2154400062","https://openalex.org/W2416502813","https://openalex.org/W2913464964"],"abstract_inverted_index":{"Based":[0],"on":[1,19],"the":[2,21,31,47,51,59,97,113,124],"mixed":[3],"idea":[4],"of":[5,33,103,115],"Progressive":[6],"alignment":[7,16,34,40,89,135],"and":[8,36,74,136],"Divide-and-conquer":[9],"alignment,":[10,66,100],"two":[11],"different":[12],"multithreaded":[13],"multiple":[14],"sequence":[15],"programs,":[17],"depending":[18],"how":[20],"guide":[22,44,62,81,84],"tree(s)":[23],"would":[24],"be":[25,55,69],"applied,":[26],"are":[27],"implemented":[28],"for":[29,46,122,129],"checking":[30],"improvements":[32],"speed":[35],"sensitivity.":[37],"The":[38],"single-tree":[39],"builds":[41],"a":[42,92],"uniformed":[43],"tree":[45,99],"full-length":[48],"sequences":[49,67],"at":[50,105],"beginning,":[52],"which":[53],"will":[54,68,77],"used":[56],"by":[57],"all":[58],"sub-alignments":[60],"as":[61,112,133],"tree.":[63],"In":[64],"multiple-tree":[65],"firstly":[70],"cut":[71,125],"into":[72],"pieces":[73],"these":[75],"sub-sequences":[76],"build":[78],"their":[79,85],"own":[80],"trees":[82],"to":[83],"individual":[86],"alignments.":[87],"Multiple-tree":[88],"seems":[90],"having":[91],"better":[93],"speedup":[94],"performance":[95],"than":[96],"single":[98],"but":[101],"neither":[102],"them,":[104],"this":[106],"stage,":[107],"shows":[108],"ideal":[109],"sensitivity":[110],"results":[111],"number":[114],"threads":[116],"increases.":[117],"Therefore,":[118],"some":[119],"heuristic":[120],"methods":[121],"fixing":[123],"points":[126],"were":[127],"suggested":[128],"future":[130],"improvement,":[131],"such":[132],"overlapping":[134],"sliding":[137],"window":[138],"alignment.":[139]},"counts_by_year":[],"updated_date":"2026-10-26T11:51:55.731654","created_date":"2016-06-24T00:00:00"}
