{"id":"https://openalex.org/W2168680604","doi":"https://doi.org/10.1186/1471-2164-12-516","title":"The classification of mRNA expression levels by the phosphorylation state of RNAPII CTD based on a combined genome-wide approach","display_name":"The classification of mRNA expression levels by the phosphorylation state of RNAPII CTD based on a combined genome-wide approach","publication_year":2011,"publication_date":"2011-10-20","ids":{"openalex":"https://openalex.org/W2168680604","doi":"https://doi.org/10.1186/1471-2164-12-516","mag":"2168680604","pmid":"https://pubmed.ncbi.nlm.nih.gov/22011111","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/3209707"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2164-12-516","doi":"https://doi.org/10.1186/1471-2164-12-516","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2164-12-516","pdf_url":"https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/1471-2164-12-516","source":{"id":"https://openalex.org/S28614077","display_name":"BMC Genomics","issn_l":"1471-2164","issn":["1471-2164"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/1471-2164-12-516","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043099039","display_name":"Jun Odawara","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Jun Odawara","raw_affiliation_strings":["Kyushu University, Fukuoka 812-8582, Japan","Faculty of Medicine Div. Epigenetics, Kyushu University, Fukuoka, 812-8582, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kyushu University, Fukuoka 812-8582, Japan","institution_ids":["https://openalex.org/I135598925"]},{"raw_affiliation_string":"Faculty of Medicine Div. Epigenetics, Kyushu University, Fukuoka, 812-8582, Japan","institution_ids":["https://openalex.org/I135598925"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113944739","display_name":"Akihito Harada","orcid":"https://orcid.org/0009-0003-1420-4549","observed_orcids":["https://orcid.org/0009-0003-1420-4549"]},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Akihito Harada","raw_affiliation_strings":["Faculty of Medicine Div. Epigenetics, Kyushu University, Fukuoka, 812-8582, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Medicine Div. Epigenetics, Kyushu University, Fukuoka, 812-8582, Japan","institution_ids":["https://openalex.org/I135598925"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014402164","display_name":"Tomohiko Yoshimi","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I317356780","display_name":"Osaka City University","ror":"https://ror.org/02skfsw40","country_code":"JP","type":"education","lineage":["https://openalex.org/I317356780","https://openalex.org/I4387152983"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tomohiko Yoshimi","raw_affiliation_strings":["Department of Bioengineering, Graduate School of Engineering, Osaka City University, Osaka, 558-8585, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, Graduate School of Engineering, Osaka City University, Osaka, 558-8585, Japan","institution_ids":["https://openalex.org/I317356780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076516162","display_name":"Kazumitsu Maehara","orcid":"https://orcid.org/0000-0002-2933-5176","observed_orcids":["https://orcid.org/0000-0002-2933-5176"]},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kazumitsu Maehara","raw_affiliation_strings":["Faculty of Medicine Div. Epigenetics, Kyushu University, Fukuoka, 812-8582, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Medicine Div. Epigenetics, Kyushu University, Fukuoka, 812-8582, Japan","institution_ids":["https://openalex.org/I135598925"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078580328","display_name":"Taro Tachibana","orcid":"https://orcid.org/0009-0004-2540-2951","observed_orcids":["https://orcid.org/0009-0004-2540-2951"]},"institutions":[{"id":"https://openalex.org/I317356780","display_name":"Osaka City University","ror":"https://ror.org/02skfsw40","country_code":"JP","type":"education","lineage":["https://openalex.org/I317356780","https://openalex.org/I4387152983"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Taro Tachibana","raw_affiliation_strings":["Department of Bioengineering, Graduate School of Engineering, Osaka City University, Osaka, 558-8585, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, Graduate School of Engineering, Osaka City University, Osaka, 558-8585, Japan","institution_ids":["https://openalex.org/I317356780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058646134","display_name":"Seiji Okada","orcid":"https://orcid.org/0000-0002-5107-8209","observed_orcids":["https://orcid.org/0000-0002-5107-8209"]},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Seiji Okada","raw_affiliation_strings":["Faculty of Medicine Div. Epigenetics, Kyushu University, Fukuoka, 812-8582, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Medicine Div. Epigenetics, Kyushu University, Fukuoka, 812-8582, Japan","institution_ids":["https://openalex.org/I135598925"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102870989","display_name":"Koichi Akashi","orcid":"https://orcid.org/0000-0001-7763-5723","observed_orcids":["https://orcid.org/0000-0001-7763-5723"]},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Koichi Akashi","raw_affiliation_strings":["Department of Medicine and Biosystemic Sciences, Kyushu University Graduate School of Medicine, Fukuoka, 812-8582, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine and Biosystemic Sciences, Kyushu University Graduate School of Medicine, Fukuoka, 812-8582, Japan","institution_ids":["https://openalex.org/I135598925"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063649274","display_name":"Yasuyuki Ohkawa","orcid":"https://orcid.org/0000-0001-6440-9954","observed_orcids":["https://orcid.org/0000-0001-6440-9954"]},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Yasuyuki Ohkawa","raw_affiliation_strings":["Faculty of Medicine Div. Epigenetics, Kyushu University, Fukuoka, 812-8582, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Medicine Div. Epigenetics, Kyushu University, Fukuoka, 812-8582, Japan","institution_ids":["https://openalex.org/I135598925"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5063649274"],"corresponding_institution_ids":["https://openalex.org/I135598925"],"apc_list":{"value":3090,"currency":"USD","value_usd":3090},"apc_paid":{"value":3090,"currency":"USD","value_usd":3090},"fwci":0.9628,"has_fulltext":true,"cited_by_count":42,"citation_normalized_percentile":{"value":0.70833333,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"12","issue":"1","first_page":"516","last_page":"516"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.00559999980032444,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.0007999999797903001,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-polymerase-ii","display_name":"RNA polymerase II","score":0.9509999752044678},{"id":"https://openalex.org/keywords/c-terminal-domain-phosphorylation","display_name":"C-terminal domain phosphorylation","score":0.9459999799728394},{"id":"https://openalex.org/keywords/mrna-levels","display_name":"mRNA levels","score":0.7940000295639038},{"id":"https://openalex.org/keywords/transcriptional-pausing","display_name":"transcriptional pausing","score":0.8600000143051147},{"id":"https://openalex.org/keywords/ser2-phosphorylation","display_name":"Ser2 phosphorylation","score":0.8140000104904175},{"id":"https://openalex.org/keywords/ser5-phosphorylation","display_name":"Ser5 phosphorylation","score":1.0},{"id":"https://openalex.org/keywords/rpb1","display_name":"RPB1","score":0.597000002861023},{"id":"https://openalex.org/keywords/mrna-quantification","display_name":"mRNA quantification","score":0.4659999907016754},{"id":"https://openalex.org/keywords/chip-seq","display_name":"ChIP-seq","score":0.703000009059906},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-seq","score":0.9629999995231628}],"concepts":[{"id":"https://openalex.org/C125533998","wikidata":"https://www.wikidata.org/wiki/Q1024499","display_name":"CTD","level":2,"score":0.9210878610610962},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7731136679649353},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5923361778259277},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.5552117228507996},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5436633229255676},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.5406218767166138},{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.5050614476203918},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47133803367614746},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.4608862102031708},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4495653808116913},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.4292405843734741},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.3320252299308777},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.27054518461227417},{"id":"https://openalex.org/C111368507","wikidata":"https://www.wikidata.org/wiki/Q43518","display_name":"Oceanography","level":1,"score":0.0},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000911","descriptor_name":"Antibodies, Monoclonal","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006367","descriptor_name":"HeLa Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012319","descriptor_name":"RNA Polymerase II","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D012319","descriptor_name":"RNA Polymerase II","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2164-12-516","doi":"https://doi.org/10.1186/1471-2164-12-516","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2164-12-516","pdf_url":"https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/1471-2164-12-516","source":{"id":"https://openalex.org/S28614077","display_name":"BMC Genomics","issn_l":"1471-2164","issn":["1471-2164"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2212569","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3209707","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmid:22011111","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22011111","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC genomics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3209707","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC3209707/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:1743173ea6a84ad08632afed54bd2732","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/1743173ea6a84ad08632afed54bd2732","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Genomics, Vol 12, Iss 1, p 516 (2011)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1471-2164-12-516","doi":"https://doi.org/10.1186/1471-2164-12-516","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2164-12-516","pdf_url":"https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/1471-2164-12-516","source":{"id":"https://openalex.org/S28614077","display_name":"BMC Genomics","issn_l":"1471-2164","issn":["1471-2164"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1931407159","display_name":"The accurate determination of gene loci by genome-wide approach","funder_award_id":"23651195","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G570201753","display_name":"Biomarker discovery for spinal cord injury using shotgun proteomics","funder_award_id":"22390292","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G6573562170","display_name":"Lineage potential regulated by high order chromatin structure","funder_award_id":"23310134","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G8279798240","display_name":"Identification of possible biomarkers for the efficient physiotherapy after the CNS injury.","funder_award_id":"23650327","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320324229","display_name":"Kaibara Morikazu Medical Science Promotion Foundation","ror":"https://ror.org/00jk42n91"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2168680604.pdf","grobid_xml":"https://content.openalex.org/works/W2168680604.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1967269362","https://openalex.org/W1973996769","https://openalex.org/W1994340334","https://openalex.org/W1995733973","https://openalex.org/W1996212302","https://openalex.org/W1998248450","https://openalex.org/W1999820213","https://openalex.org/W2007844697","https://openalex.org/W2009444548","https://openalex.org/W2013383208","https://openalex.org/W2018092284","https://openalex.org/W2018968077","https://openalex.org/W2020329201","https://openalex.org/W2027071899","https://openalex.org/W2039836615","https://openalex.org/W2067455706","https://openalex.org/W2077132193","https://openalex.org/W2087573417","https://openalex.org/W2089422977","https://openalex.org/W2097065948","https://openalex.org/W2100649212","https://openalex.org/W2101466802","https://openalex.org/W2103017472","https://openalex.org/W2121211805","https://openalex.org/W2124985265","https://openalex.org/W2129695504","https://openalex.org/W2133938268","https://openalex.org/W2141458291","https://openalex.org/W2147126535","https://openalex.org/W2154431984","https://openalex.org/W2155804510","https://openalex.org/W2160310631","https://openalex.org/W2160699408"],"related_works":["https://openalex.org/W3005392448","https://openalex.org/W7166509072","https://openalex.org/W1481179850","https://openalex.org/W4295079425","https://openalex.org/W3176537012","https://openalex.org/W7030454844","https://openalex.org/W4389777699","https://openalex.org/W2418692346","https://openalex.org/W3015132814","https://openalex.org/W6922100234"],"abstract_inverted_index":{"BACKGROUND:":[0],"Cellular":[1],"function":[2],"is":[3,62,71,85,188,210],"regulated":[4,10],"by":[5,122,136,191],"the":[6,29,33,39,44,57,65,107,110,146,174,184,192,202,224,240],"balance":[7],"of":[8,12,42,47,60,68,112,134,148,178,186,195,218,226,229,243],"stringently":[9],"amounts":[11],"mRNA.":[13,219],"Previous":[14],"reports":[15],"revealed":[16,168],"that":[17,169,183,223],"RNA":[18],"polymerase":[19],"II":[20],"(RNAPII),":[21],"which":[22,207],"transcribes":[23],"mRNA,":[24],"can":[25],"be":[26,233],"classified":[27,234],"into":[28,235],"pausing":[30,69,89],"state":[31,36,41,59,242],"and":[32,56,102,114,124,155,163,197],"active":[34,92],"transcription":[35],"according":[37,238],"to":[38,239],"phosphorylation":[40,58,111,176,194,241],"RPB1,":[43],"catalytic":[45],"subunit":[46],"RNAPII.":[48,179,244],"However,":[49],"genome-wide":[50],"association":[51,84],"between":[52,109],"mRNA":[53,115,135,170,187,230],"expression":[54,96,116],"level":[55,217],"RNAPII":[61,113,167],"unclear.":[63],"While":[64],"functional":[66],"importance":[67],"genes":[70,90,94],"clear,":[72],"such":[73,99,152],"as":[74,100,153],"in":[75,95,141],"mouse":[76],"Embryonic":[77],"Stem":[78],"cells":[79],"for":[80,87,165,206],"differentiation,":[81],"understanding":[82],"this":[83],"critical":[86],"distinguishing":[88],"from":[91],"transcribing":[93],"profiling":[97],"data,":[98],"microarrays":[101],"RNAseq.":[103,125,142],"Therefore,":[104],"we":[105],"examined":[106],"correlation":[108],"levels":[117,171,231],"using":[118,160],"a":[119,130,215],"combined":[120,158],"analysis":[121,159,221],"ChIPseq":[123,164],"RESULTS:":[126],"We":[127,143,181],"first":[128],"performed":[129],"precise":[131],"quantitative":[132,227],"measurement":[133],"performing":[137],"an":[138],"optimized":[139,161],"calculation":[140],"then":[144],"visualized":[145],"recruitment":[147],"various":[149,175],"phosphorylated":[150,166],"RNAPIIs,":[151],"Ser2P":[154],"Ser5P.":[156],"A":[157],"RNAseq":[162],"correlate":[172],"with":[173],"states":[177],"CONCLUSIONS:":[180],"demonstrated":[182],"amount":[185],"precisely":[189],"reflected":[190],"phased":[193],"Ser2":[196],"Ser5.":[198],"In":[199],"particular,":[200],"even":[201],"most":[203],"\"pausing\"":[204],"genes,":[205],"only":[208],"Ser5":[209],"phosphorylated,":[211],"were":[212],"detectable":[213],"at":[214],"certain":[216],"Our":[220],"indicated":[222],"complexity":[225],"regulation":[228],"could":[232],"three":[236],"categories":[237]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2016-06-24T00:00:00"}
