{"id":"https://openalex.org/W2162817849","doi":"https://doi.org/10.1186/1471-2164-11-691","title":"Simple sequence repeat variation in the Daphnia pulex genome","display_name":"Simple sequence repeat variation in the Daphnia pulex genome","publication_year":2010,"publication_date":"2010-12-01","ids":{"openalex":"https://openalex.org/W2162817849","doi":"https://doi.org/10.1186/1471-2164-11-691","mag":"2162817849","pmid":"https://pubmed.ncbi.nlm.nih.gov/21129182","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/3017760"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2164-11-691","doi":"https://doi.org/10.1186/1471-2164-11-691","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2164-11-691","pdf_url":"https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/1471-2164-11-691","source":{"id":"https://openalex.org/S28614077","display_name":"BMC Genomics","issn_l":"1471-2164","issn":["1471-2164"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/1471-2164-11-691","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014342793","display_name":"Way Sung","orcid":"https://orcid.org/0000-0002-8336-8913","observed_orcids":["https://orcid.org/0000-0002-8336-8913"]},"institutions":[{"id":"https://openalex.org/I161057412","display_name":"University of New Hampshire","ror":"https://ror.org/01rmh9n78","country_code":"US","type":"education","lineage":["https://openalex.org/I161057412"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Way Sung","raw_affiliation_strings":["Hubbard Center for Genome Studies, University of New Hampshire, Durham, NH 03824, USA. wsung@cisunix.unh.edu","Hubbard Center for Genome Studies, University of New Hampshire, Durham, NH, 03824, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hubbard Center for Genome Studies, University of New Hampshire, Durham, NH 03824, USA. wsung@cisunix.unh.edu","institution_ids":["https://openalex.org/I161057412"]},{"raw_affiliation_string":"Hubbard Center for Genome Studies, University of New Hampshire, Durham, NH, 03824, USA","institution_ids":["https://openalex.org/I161057412"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055302845","display_name":"Abraham E. Tucker","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I161057412","display_name":"University of New Hampshire","ror":"https://ror.org/01rmh9n78","country_code":"US","type":"education","lineage":["https://openalex.org/I161057412"]},{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I592451","display_name":"Indiana University","ror":"https://ror.org/01kg8sb98","country_code":"US","type":"education","lineage":["https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abraham Tucker","raw_affiliation_strings":["Department of Biology, Indiana University, Bloomington, IN, 47405, USA","Hubbard Center for Genome Studies, University of New Hampshire, Durham, NH, 03824, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Indiana University, Bloomington, IN, 47405, USA","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"raw_affiliation_string":"Hubbard Center for Genome Studies, University of New Hampshire, Durham, NH, 03824, USA","institution_ids":["https://openalex.org/I161057412"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043713217","display_name":"R. Daniel Bergeron","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I161057412","display_name":"University of New Hampshire","ror":"https://ror.org/01rmh9n78","country_code":"US","type":"education","lineage":["https://openalex.org/I161057412"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R Daniel Bergeron","raw_affiliation_strings":["Department of Computer Science, University of New Hampshire, Durham, NH, 03824, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of New Hampshire, Durham, NH, 03824, USA","institution_ids":["https://openalex.org/I161057412"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053297258","display_name":"Michael Lynch","orcid":"https://orcid.org/0000-0002-1653-0642","observed_orcids":["https://orcid.org/0000-0002-1653-0642"]},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I592451","display_name":"Indiana University","ror":"https://ror.org/01kg8sb98","country_code":"US","type":"education","lineage":["https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Lynch","raw_affiliation_strings":["Department of Biology, Indiana University, Bloomington, IN, 47405, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Indiana University, Bloomington, IN, 47405, USA","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108523801","display_name":"W. Kelley Thomas","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I161057412","display_name":"University of New Hampshire","ror":"https://ror.org/01rmh9n78","country_code":"US","type":"education","lineage":["https://openalex.org/I161057412"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W Kelley Thomas","raw_affiliation_strings":["Hubbard Center for Genome Studies, University of New Hampshire, Durham, NH, 03824, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hubbard Center for Genome Studies, University of New Hampshire, Durham, NH, 03824, USA","institution_ids":["https://openalex.org/I161057412"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5014342793"],"corresponding_institution_ids":["https://openalex.org/I161057412"],"apc_list":{"value":3090,"currency":"USD","value_usd":3090},"apc_paid":{"value":3090,"currency":"USD","value_usd":3090},"fwci":1.078,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.7863666,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":97},"biblio":{"volume":"11","issue":"1","first_page":"691","last_page":"691"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.6083999872207642,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.6083999872207642,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.32280001044273376,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.04450000077486038,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microsatellite-markers","display_name":"microsatellite markers","score":0.9739999771118164},{"id":"https://openalex.org/keywords/daphnia-pulex","display_name":"Daphnia pulex","score":0.9860000014305115},{"id":"https://openalex.org/keywords/repeat-number","display_name":"repeat number","score":0.7269999980926514},{"id":"https://openalex.org/keywords/homopolymers","display_name":"homopolymers","score":0.7919999957084656},{"id":"https://openalex.org/keywords/recombination","display_name":"recombination","score":0.9399999976158142}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8707449436187744},{"id":"https://openalex.org/C2779765374","wikidata":"https://www.wikidata.org/wiki/Q1080188","display_name":"Daphnia pulex","level":4,"score":0.8184911012649536},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.7229315638542175},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5944549441337585},{"id":"https://openalex.org/C61320498","wikidata":"https://www.wikidata.org/wiki/Q265193","display_name":"Microsatellite","level":4,"score":0.5774011015892029},{"id":"https://openalex.org/C61271108","wikidata":"https://www.wikidata.org/wiki/Q3180866","display_name":"Genome size","level":4,"score":0.4873098134994507},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.4253847002983093},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.39461076259613037},{"id":"https://openalex.org/C2780187675","wikidata":"https://www.wikidata.org/wiki/Q269354","display_name":"Daphnia","level":3,"score":0.20705968141555786},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16510018706321716},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.15723362565040588},{"id":"https://openalex.org/C84766238","wikidata":"https://www.wikidata.org/wiki/Q25364","display_name":"Crustacean","level":2,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003621","descriptor_name":"Daphnia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006579","descriptor_name":"Heterozygote","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017354","descriptor_name":"Point Mutation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018598","descriptor_name":"Minisatellite Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056426","descriptor_name":"Genetic Loci","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2164-11-691","doi":"https://doi.org/10.1186/1471-2164-11-691","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2164-11-691","pdf_url":"https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/1471-2164-11-691","source":{"id":"https://openalex.org/S28614077","display_name":"BMC Genomics","issn_l":"1471-2164","issn":["1471-2164"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3017760","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3017760","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"Text"},{"id":"pmid:21129182","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21129182","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC genomics","raw_type":"Journal Article"},{"id":"pmh:oai:scholars.unh.edu:mcbs_facpub-1008","doi":null,"is_oa":true,"landing_page_url":"https://scholars.unh.edu/mcbs_facpub/9","pdf_url":null,"source":{"id":"https://openalex.org/S4377196362","display_name":"University of New Hampshire Scholars Repository (University of New Hampshire at Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I179093154","host_organization_name":"University of New Hampshire at Manchester","host_organization_lineage":["https://openalex.org/I179093154"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Molecular, Cellular & Biomedical Sciences","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:3f8b1213860c49ce97f0e13b4a5237f9","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/3f8b1213860c49ce97f0e13b4a5237f9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Genomics, Vol 11, Iss 1, p 691 (2010)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1471-2164-11-691","doi":"https://doi.org/10.1186/1471-2164-11-691","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2164-11-691","pdf_url":"https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/1471-2164-11-691","source":{"id":"https://openalex.org/S28614077","display_name":"BMC Genomics","issn_l":"1471-2164","issn":["1471-2164"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1079818582","display_name":null,"funder_award_id":"AC02\u201005CH11231","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G1101028137","display_name":null,"funder_award_id":"W-7405-ENG 48","funder_id":"https://openalex.org/F4320338286","funder_display_name":"Lawrence Livermore National Laboratory"},{"id":"https://openalex.org/G1143651532","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1337544421","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G1414775356","display_name":null,"funder_award_id":"No. DE-AC02- 05-CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1581387393","display_name":null,"funder_award_id":"No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G1702950523","display_name":null,"funder_award_id":"W-7405","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1816284028","display_name":null,"funder_award_id":"Contract No. DE-AC02-05-CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1863003419","display_name":null,"funder_award_id":"DEAC02-05CH11231","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G223002938","display_name":null,"funder_award_id":"DE-AC02 \u2212 05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G2713861829","display_name":null,"funder_award_id":"W\u20107405\u2010ENG\u201036","funder_id":"https://openalex.org/F4320338304","funder_display_name":"Los Alamos National Laboratory"},{"id":"https://openalex.org/G2857863752","display_name":null,"funder_award_id":"No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3177268909","display_name":null,"funder_award_id":"-7405-Eng-48","funder_id":"https://openalex.org/F4320338286","funder_display_name":"Lawrence Livermore National Laboratory"},{"id":"https://openalex.org/G3432487278","display_name":null,"funder_award_id":"Contract No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G365575497","display_name":null,"funder_award_id":"No. DE-AC02-05-CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G382641700","display_name":null,"funder_award_id":"DE-AC02\u201305CH11231","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G419881185","display_name":null,"funder_award_id":"DEAC02\u201305CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G42916606","display_name":null,"funder_award_id":"DE AC02 05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G6115782557","display_name":null,"funder_award_id":"W-7405-ENG-36","funder_id":"https://openalex.org/F4320338286","funder_display_name":"Lawrence Livermore National Laboratory"},{"id":"https://openalex.org/G6445123630","display_name":null,"funder_award_id":"-7405-ENG-48","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G654302390","display_name":null,"funder_award_id":"Contract No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G7205239661","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320316170","funder_display_name":"Joint Genome Institute"},{"id":"https://openalex.org/G7354628648","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G7787287669","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G797745481","display_name":null,"funder_award_id":"W-7405-ENG-36","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G805243471","display_name":null,"funder_award_id":"Contract No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8326222658","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320338286","funder_display_name":"Lawrence Livermore National Laboratory"},{"id":"https://openalex.org/G834277795","display_name":null,"funder_award_id":"DE\u2013AC02\u201305CH11231","funder_id":"https://openalex.org/F4320316170","funder_display_name":"Joint Genome Institute"},{"id":"https://openalex.org/G8437677540","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320338304","funder_display_name":"Los Alamos National Laboratory"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320307758","display_name":"Eli Lilly and Company","ror":"https://ror.org/01qat3289"},{"id":"https://openalex.org/F4320309409","display_name":"Lilly Endowment","ror":"https://ror.org/00cpsd622"},{"id":"https://openalex.org/F4320316170","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337509","display_name":"Biological and Environmental Research","ror":"https://ror.org/0114b2m14"},{"id":"https://openalex.org/F4320338286","display_name":"Lawrence Livermore National Laboratory","ror":"https://ror.org/041nk4h53"},{"id":"https://openalex.org/F4320338292","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02"},{"id":"https://openalex.org/F4320338304","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2162817849.pdf","grobid_xml":"https://content.openalex.org/works/W2162817849.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1513719004","https://openalex.org/W1528307809","https://openalex.org/W1562097577","https://openalex.org/W1911384112","https://openalex.org/W1970114035","https://openalex.org/W1982733818","https://openalex.org/W2021179500","https://openalex.org/W2026575204","https://openalex.org/W2031612469","https://openalex.org/W2034565173","https://openalex.org/W2063687233","https://openalex.org/W2073413487","https://openalex.org/W2093629173","https://openalex.org/W2095754207","https://openalex.org/W2097095628","https://openalex.org/W2104061580","https://openalex.org/W2115568871","https://openalex.org/W2127036769","https://openalex.org/W2131346206","https://openalex.org/W2135135381","https://openalex.org/W2139287674","https://openalex.org/W2145406188","https://openalex.org/W2149191067","https://openalex.org/W2150156894","https://openalex.org/W2155011204","https://openalex.org/W2155964482","https://openalex.org/W2160517750","https://openalex.org/W2170600903","https://openalex.org/W2171787842","https://openalex.org/W4243339116"],"related_works":["https://openalex.org/W6977074327","https://openalex.org/W6901953456","https://openalex.org/W6977312986","https://openalex.org/W2006958389","https://openalex.org/W6901984023","https://openalex.org/W6958495209","https://openalex.org/W6939388573","https://openalex.org/W6920485621","https://openalex.org/W6902147951","https://openalex.org/W2200736615"],"abstract_inverted_index":{"BACKGROUND:":[0],"Simple":[1],"sequence":[2],"repeats":[3],"(SSRs)":[4],"are":[5,236],"highly":[6],"variable":[7],"features":[8],"of":[9,23,28,53,79,85,101,120,159,173,188,223,233,244,259],"all":[10],"genomes.":[11,33],"Their":[12],"rapid":[13],"evolution":[14],"makes":[15],"them":[16],"useful":[17],"for":[18,161],"tracing":[19],"the":[20,49,57,71,98,106,157,170,186,202,256],"evolutionary":[21],"history":[22],"populations":[24],"and":[25,30,51,105,118,131,165,182,198,214,217,239,248],"investigating":[26],"patterns":[27,158],"selection":[29],"mutation":[31],"across":[32],"The":[34],"recently":[35],"sequenced":[36],"Daphnia":[37,72,203,227],"pulex":[38,73,204,228],"genome":[39,74,93],"provides":[40],"us":[41],"with":[42,75,82,134],"a":[43,83,148,209,242],"valuable":[44],"data":[45],"set":[46],"to":[47,96,111,156,255],"study":[48],"mode":[50],"tempo":[52],"SSR":[54,68,103,121,126,224,234,260],"evolution,":[55],"without":[56],"inherent":[58],"biases":[59],"that":[60,108,125,153,185,230,241],"accompany":[61],"marker":[62],"selection.":[63],"RESULTS:":[64],"Here":[65],"we":[66,146,207],"catalogue":[67],"loci":[69],"in":[70,226],"repeated":[76],"motif":[77,114,116,129,140,199,237],"sizes":[78],"1-100":[80],"nucleotides":[81],"minimum":[84],"3":[86],"perfect":[87],"repeats.":[88],"We":[89,123],"then":[90],"used":[91],"whole":[92],"shotgun":[94],"reads":[95],"determine":[97],"average":[99],"heterozygosity":[100,127],"each":[102],"type":[104],"relationship":[107],"it":[109],"has":[110],"repeat":[112,135,196,250,261],"number,":[113],"size,":[115],"sequence,":[117],"distribution":[119],"loci.":[122,262],"find":[124],"is":[128,192],"specific,":[130],"positively":[132],"correlated":[133],"number":[136,197],"as":[137,139],"well":[138],"size.":[141,200],"For":[142],"non-repeat":[143],"unit":[144,175,190,245],"polymorphisms,":[145],"identify":[147],"motif-dependent":[149],"end-nucleotide":[150],"polymorphism":[151],"bias":[152],"may":[154],"contribute":[155,254],"abundance":[160],"specific":[162],"homopolymers,":[163],"dimers,":[164],"trimers.":[166],"Our":[167],"observations":[168],"confirm":[169],"high":[171],"frequency":[172,216],"multiple":[174,189],"variation":[176,191,225,235,247],"(multistep)":[177],"at":[178],"large":[179],"microsatellite":[180],"loci,":[181],"further":[183],"show":[184,208],"occurrence":[187],"dependent":[193,238],"on":[194],"both":[195],"Using":[201],"genetic":[205],"map,":[206],"positive":[210],"correlation":[211],"between":[212],"dimer":[213],"trimer":[215],"recombination.":[218],"CONCLUSIONS:":[219],"This":[220],"genome-wide":[221],"analysis":[222],"indicates":[229],"several":[231],"aspects":[232],"suggests":[240],"combination":[243],"length":[246],"end":[249],"biased":[251],"base":[252],"substitution":[253],"unique":[257],"spectrum":[258]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2016-06-24T00:00:00"}
