{"id":"https://openalex.org/W2161540539","doi":"https://doi.org/10.1109/mmbia.2012.6164757","title":"Automatic atlas-based three-label cartilage segmentation from MR knee images","display_name":"Automatic atlas-based three-label cartilage segmentation from MR knee images","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2161540539","doi":"https://doi.org/10.1109/mmbia.2012.6164757","mag":"2161540539","pmid":"https://pubmed.ncbi.nlm.nih.gov/23685704","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/3656482"},"language":"en","primary_location":{"id":"doi:10.1109/mmbia.2012.6164757","doi":"https://doi.org/10.1109/mmbia.2012.6164757","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mmbia.2012.6164757","pdf_url":null,"source":{"id":"https://openalex.org/S7407107267","display_name":"IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis","raw_type":"proceedings-article"},"volume":null,"type":"conference-paper","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3656482","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108575841","display_name":"Shan Liang","orcid":"https://orcid.org/0000-0002-9734-9166","observed_orcids":["https://orcid.org/0000-0002-9734-9166"]},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liang Shan","raw_affiliation_strings":["Department of Computer Science, UNC Chapel Hill, shan@cs.unc.edu","Department of Computer Science, UNC Chapel Hill, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, UNC Chapel Hill, shan@cs.unc.edu","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"Department of Computer Science, UNC Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109197109","display_name":"Cecil H. Charles","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cecil Charles","raw_affiliation_strings":["Department of Radiology, Duke University, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology, Duke University, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108610850","display_name":"Marc Niethammer","orcid":"https://orcid.org/0009-0003-7340-9050","observed_orcids":["https://orcid.org/0009-0003-7340-9050"]},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marc Niethammer","raw_affiliation_strings":["Department of Computer Science, UNC Chapel Hill, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, UNC Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.7723,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.87491535,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"241","last_page":"246"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.0012000000569969416,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.0,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cartilage-segmentation","display_name":"cartilage segmentation","score":0.9129999876022339},{"id":"https://openalex.org/keywords/knee-joint","display_name":"knee joint","score":0.5870000123977661},{"id":"https://openalex.org/keywords/femoral-cartilage","display_name":"femoral cartilage","score":0.8289999961853027},{"id":"https://openalex.org/keywords/tibial-cartilage","display_name":"tibial cartilage","score":1.0},{"id":"https://openalex.org/keywords/atlas-based-segmentation","display_name":"atlas-based segmentation","score":0.7250000238418579},{"id":"https://openalex.org/keywords/anisotropic-regularization","display_name":"anisotropic regularization","score":0.8420000076293945},{"id":"https://openalex.org/keywords/t1-weighted-mri","display_name":"T1-weighted imaging","score":0.7440000176429749},{"id":"https://openalex.org/keywords/osteoarthritis","display_name":"osteoarthritis","score":0.902999997138977},{"id":"https://openalex.org/keywords/automatic-segmentation","display_name":"automatic segmentation","score":0.38600000739097595}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.8229707479476929},{"id":"https://openalex.org/C2780550940","wikidata":"https://www.wikidata.org/wiki/Q502730","display_name":"Cartilage","level":2,"score":0.6548216342926025},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6545674800872803},{"id":"https://openalex.org/C2776164576","wikidata":"https://www.wikidata.org/wiki/Q62736","display_name":"Osteoarthritis","level":3,"score":0.6530627012252808},{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.6246916055679321},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6111573576927185},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.569379448890686},{"id":"https://openalex.org/C143409427","wikidata":"https://www.wikidata.org/wiki/Q161238","display_name":"Magnetic resonance imaging","level":2,"score":0.5172227621078491},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.4736391603946686},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4524562954902649},{"id":"https://openalex.org/C3018143345","wikidata":"https://www.wikidata.org/wiki/Q37425","display_name":"Knee cartilage","level":5,"score":0.4337650239467621},{"id":"https://openalex.org/C3020332539","wikidata":"https://www.wikidata.org/wiki/Q2014564","display_name":"Articular cartilage","level":4,"score":0.26597896218299866},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.22995242476463318},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.15481120347976685},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.1183839738368988},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.06789389252662659},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/mmbia.2012.6164757","doi":"https://doi.org/10.1109/mmbia.2012.6164757","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mmbia.2012.6164757","pdf_url":null,"source":{"id":"https://openalex.org/S7407107267","display_name":"IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis","raw_type":"proceedings-article"},{"id":"pmid:23685704","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23685704","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. Workshop on Mathematical Methods in Biomedical Image Analysis","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:2653913","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3656482","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3656482","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC3656482/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Proc Workshop Math Methods Biomed Image Analysis","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:europepmc.org:2653913","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3656482","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.5683000087738037,"display_name":"Good health and well-being"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G1526341499","display_name":"Automatic Quantitative Analysis of MR Images of the Knee in Osteoarthritis","funder_award_id":"R21AR059890","funder_id":"https://openalex.org/F4320337362","funder_display_name":"National Institute of Arthritis and Musculoskeletal and Skin Diseases"}],"funders":[{"id":"https://openalex.org/F4320307765","display_name":"Pfizer","ror":"https://ror.org/01xdqrp08"},{"id":"https://openalex.org/F4320337362","display_name":"National Institute of Arthritis and Musculoskeletal and Skin Diseases","ror":"https://ror.org/006zn3t30"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W9952751","https://openalex.org/W22105911","https://openalex.org/W1530826442","https://openalex.org/W1677741797","https://openalex.org/W1967057044","https://openalex.org/W1981966254","https://openalex.org/W1983102765","https://openalex.org/W1987869189","https://openalex.org/W2009158291","https://openalex.org/W2010587020","https://openalex.org/W2019401802","https://openalex.org/W2019407777","https://openalex.org/W2032377318","https://openalex.org/W2034171605","https://openalex.org/W2049247209","https://openalex.org/W2098979973","https://openalex.org/W2099722048","https://openalex.org/W2100296123","https://openalex.org/W2101123196","https://openalex.org/W2112058288","https://openalex.org/W2113638105","https://openalex.org/W2114740909","https://openalex.org/W2114898048","https://openalex.org/W2121222027","https://openalex.org/W2131490916","https://openalex.org/W2153081691","https://openalex.org/W2153635508","https://openalex.org/W2154461664","https://openalex.org/W2157273833","https://openalex.org/W2157848968","https://openalex.org/W2162140684","https://openalex.org/W2799061466","https://openalex.org/W2998023265","https://openalex.org/W4239510810"],"related_works":["https://openalex.org/W2019407777","https://openalex.org/W2039368877","https://openalex.org/W1977454198","https://openalex.org/W2121222027","https://openalex.org/W7099047127","https://openalex.org/W2101123196","https://openalex.org/W2305297311","https://openalex.org/W2399008022","https://openalex.org/W2088496721","https://openalex.org/W2894667928"],"abstract_inverted_index":{"This":[0],"paper":[1],"proposes":[2],"a":[3,7,37,60,90],"method":[4,74],"to":[5,14,17,41],"build":[6],"bone-cartilage":[8],"atlas":[9,54],"of":[10,59,102,111],"the":[11,46,53,57,67,100],"knee":[12,82],"and":[13,21,56,104,113],"use":[15,52],"it":[16],"automatically":[18],"segment":[19],"femoral":[20,103],"tibial":[22,105],"cartilage":[23,48,72,106],"from":[24,89],"T1":[25],"weighted":[26],"magnetic":[27],"resonance":[28],"(MR)":[29],"images.":[30],"Anisotropic":[31],"spatial":[32],"regularization":[33],"is":[34,75],"incorporated":[35],"into":[36],"three-label":[38],"segmentation":[39,43,68,73,101],"framework":[40],"improve":[42],"results":[44,79],"for":[45,93,99],"thin":[47],"layers.":[49],"We":[50],"jointly":[51],"information":[55],"output":[58],"probabilistic":[61],"k":[62],"nearest":[63],"neighbor":[64],"classifier":[65],"within":[66],"method.":[69],"The":[70],"resulting":[71],"fully":[76],"automatic.":[77],"Validation":[78],"on":[80],"18":[81],"MR":[83],"images":[84],"against":[85],"manual":[86],"expert":[87],"segmentations":[88],"dataset":[91],"acquired":[92],"osteoarthritis":[94],"research":[95],"show":[96],"good":[97],"performance":[98],"(mean":[107],"Dice":[108],"similarity":[109],"coefficient":[110],"78.2%":[112],"82.6%":[114],"respectively).":[115]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2016-06-24T00:00:00"}
