{"id":"https://openalex.org/W2159628075","doi":null,"title":"A Heuristic Ontological Model of Protein Complexes A Case Study Based on the E3 Ubiquitin Ligase Protein Complexes of Arabidopsis thaliana","display_name":"A Heuristic Ontological Model of Protein Complexes A Case Study Based on the E3 Ubiquitin Ligase Protein Complexes of Arabidopsis thaliana","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2159628075","mag":"2159628075"},"language":"en","primary_location":{"id":"pmh:oai:scholar.uwindsor.ca:etd-5799","doi":null,"is_oa":true,"landing_page_url":"https://scholar.uwindsor.ca/etd/4800","pdf_url":null,"source":{"id":"https://openalex.org/S4306400430","display_name":"Scholarship at UWindsor (University of Windsor)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I74413500","host_organization_name":"University of Windsor","host_organization_lineage":["https://openalex.org/I74413500"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Electronic Theses and Dissertations","raw_type":"info:eu-repo/semantics/masterThesis"},"volume":null,"type":"dissertation","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://scholar.uwindsor.ca/etd/4800","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078179097","display_name":"Claudia DiNatale","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I74413500","display_name":"University of Windsor","ror":"https://ror.org/01gw3d370","country_code":"CA","type":"education","lineage":["https://openalex.org/I74413500"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Claudia DiNatale","raw_affiliation_strings":["[University of Windsor]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"[University of Windsor]","institution_ids":["https://openalex.org/I74413500"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5078179097"],"corresponding_institution_ids":["https://openalex.org/I74413500"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8076000213623047,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8076000213623047,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.09950000047683716,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.05079999938607216,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-ontology","display_name":"Protein Ontology","score":0.9110000133514404},{"id":"https://openalex.org/keywords/protein-complexes","display_name":"protein complexes","score":0.9679999947547913},{"id":"https://openalex.org/keywords/e3-ubiquitin-ligase","display_name":"E3 ubiquitin ligase","score":0.8349999785423279},{"id":"https://openalex.org/keywords/scf-ubiquitin-ligase","display_name":"SCF ubiquitin ligase","score":0.875},{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.9900000095367432},{"id":"https://openalex.org/keywords/ontology-revision","display_name":"ontology revision","score":0.6520000100135803},{"id":"https://openalex.org/keywords/protein-complex-assembly","display_name":"protein complex formation","score":0.859000027179718},{"id":"https://openalex.org/keywords/biological-knowledge-representation","display_name":"biological knowledge representation","score":0.7419999837875366},{"id":"https://openalex.org/keywords/model-organism-databases","display_name":"model organism databases","score":0.5509999990463257}],"concepts":[{"id":"https://openalex.org/C134459356","wikidata":"https://www.wikidata.org/wiki/Q4274835","display_name":"Ubiquitin ligase","level":4,"score":0.7736350297927856},{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.7695760726928711},{"id":"https://openalex.org/C25602115","wikidata":"https://www.wikidata.org/wiki/Q407111","display_name":"Ubiquitin","level":3,"score":0.5037676692008972},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4849122166633606},{"id":"https://openalex.org/C2908868211","wikidata":"https://www.wikidata.org/wiki/Q4274835","display_name":"Ubiquitin-Protein Ligases","level":5,"score":0.4697675406932831},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43685242533683777},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4110450744628906},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.40042853355407715},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3792749047279358},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.35515087842941284},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22210952639579773},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.17769446969032288}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:scholar.uwindsor.ca:etd-5799","doi":null,"is_oa":true,"landing_page_url":"https://scholar.uwindsor.ca/etd/4800","pdf_url":null,"source":{"id":"https://openalex.org/S4306400430","display_name":"Scholarship at UWindsor (University of Windsor)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I74413500","host_organization_name":"University of Windsor","host_organization_lineage":["https://openalex.org/I74413500"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Electronic Theses and Dissertations","raw_type":"info:eu-repo/semantics/masterThesis"},{"id":"pmh:oai:uwindsor.scholaris.ca:20.500.14776/4917","doi":null,"is_oa":true,"landing_page_url":"https://hdl.handle.net/20.500.14776/4917","pdf_url":null,"source":{"id":"https://openalex.org/S4306400430","display_name":"Scholarship at UWindsor (University of Windsor)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I74413500","host_organization_name":"University of Windsor","host_organization_lineage":["https://openalex.org/I74413500"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/masterThesis"},{"id":"mag:2159628075","doi":null,"is_oa":false,"landing_page_url":"https://scholar.uwindsor.ca/cgi/viewcontent.cgi?article=5799&context=etd","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:scholar.uwindsor.ca:etd-5799","doi":null,"is_oa":true,"landing_page_url":"https://scholar.uwindsor.ca/etd/4800","pdf_url":null,"source":{"id":"https://openalex.org/S4306400430","display_name":"Scholarship at UWindsor (University of Windsor)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I74413500","host_organization_name":"University of Windsor","host_organization_lineage":["https://openalex.org/I74413500"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Electronic Theses and Dissertations","raw_type":"info:eu-repo/semantics/masterThesis"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":66,"referenced_works":["https://openalex.org/W33797842","https://openalex.org/W49291474","https://openalex.org/W139644854","https://openalex.org/W197223936","https://openalex.org/W1501546233","https://openalex.org/W1542026696","https://openalex.org/W1622687797","https://openalex.org/W1628054318","https://openalex.org/W1654805921","https://openalex.org/W1757909678","https://openalex.org/W1845814381","https://openalex.org/W1923798415","https://openalex.org/W1971097461","https://openalex.org/W1971938965","https://openalex.org/W1994100378","https://openalex.org/W1999615477","https://openalex.org/W2028133290","https://openalex.org/W2040017429","https://openalex.org/W2055214702","https://openalex.org/W2061231608","https://openalex.org/W2064737575","https://openalex.org/W2090399540","https://openalex.org/W2096704019","https://openalex.org/W2103017472","https://openalex.org/W2103260426","https://openalex.org/W2104942450","https://openalex.org/W2112744842","https://openalex.org/W2113142309","https://openalex.org/W2123263831","https://openalex.org/W2124103257","https://openalex.org/W2124272622","https://openalex.org/W2124957697","https://openalex.org/W2127480960","https://openalex.org/W2129731003","https://openalex.org/W2130832525","https://openalex.org/W2131660156","https://openalex.org/W2133109597","https://openalex.org/W2134980868","https://openalex.org/W2136081741","https://openalex.org/W2137280247","https://openalex.org/W2140693728","https://openalex.org/W2141329235","https://openalex.org/W2141885858","https://openalex.org/W2144303444","https://openalex.org/W2145477956","https://openalex.org/W2146253911","https://openalex.org/W2146686074","https://openalex.org/W2148602507","https://openalex.org/W2151397621","https://openalex.org/W2155956189","https://openalex.org/W2159482845","https://openalex.org/W2159583324","https://openalex.org/W2160648204","https://openalex.org/W2161062388","https://openalex.org/W2161783871","https://openalex.org/W2163670493","https://openalex.org/W2165106082","https://openalex.org/W2168292723","https://openalex.org/W2168340032","https://openalex.org/W2168922495","https://openalex.org/W2180180358","https://openalex.org/W2482833590","https://openalex.org/W2772602497","https://openalex.org/W2911529331","https://openalex.org/W2914007910","https://openalex.org/W4211208250"],"related_works":["https://openalex.org/W2124103257","https://openalex.org/W7100416494","https://openalex.org/W2156485746","https://openalex.org/W2296435332","https://openalex.org/W2061231608","https://openalex.org/W2106830745","https://openalex.org/W6996352272","https://openalex.org/W2585399636","https://openalex.org/W2588400773","https://openalex.org/W4400166362"],"abstract_inverted_index":{"Ontology":[0,80],"(with":[1],"a":[2,48,83,100],"capital":[3],"O)":[4],"is":[5,82,122],"the":[6,10,19,40,55,90,115,125,138],"philosophical":[7],"study":[8],"of":[9,12,21,33,57,129],"nature":[11],"existence":[13],"that":[14,23],"was":[15,36],"derived":[16],"to":[17,27,43,53,88,117,135],"define":[18],"relationships":[20,91],"entities":[22],"can":[24],"be":[25],"said":[26],"exist":[28],"in":[29,51,133],"nature.":[30],"The":[31,78],"concept":[32],"an":[34],"ontology":[35,86],"later":[37],"adopted":[38],"by":[39],"biological":[41,49,58,73,85],"sciences":[42],"formally":[44],"represent":[45,89,120],"knowledge":[46],"within":[47],"domain":[50],"order":[52,134],"standardize":[54],"annotation":[56],"data,":[59],"and":[60,65,70,74,94,108,127],"further,":[61],"enable":[62],"more":[63,118],"efficient":[64],"easier":[66],"data":[67],"collection,":[68],"sharing,":[69],"reuse":[71],"across":[72],"model":[75],"organism":[76],"databases.":[77],"Protein":[79],"(PRO)":[81],"specific":[84],"developed":[87],"between":[92],"proteins":[93],"protein":[95,130],"complexes.":[96],"This":[97],"thesis":[98],"presents":[99],"revised":[101],"PRO":[102],"framework,":[103],"modelled":[104],"around":[105],"Arabidopsis":[106],"thaliana":[107],"associated":[109],"SCF":[110],"ubiquitin":[111],"ligase":[112],"complexes,":[113],"with":[114],"aim":[116],"adequately":[119],"what":[121],"known":[123],"about":[124],"process":[126],"dynamics":[128],"complex":[131],"formation":[132],"better":[136],"serve":[137],"broader":[139],"scientific":[140],"community.":[141]},"counts_by_year":[],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}
