{"id":"https://openalex.org/W2159155807","doi":"https://doi.org/10.1002/prot.22849","title":"Protein loop modeling by using fragment assembly and analytical loop closure","display_name":"Protein loop modeling by using fragment assembly and analytical loop closure","publication_year":2010,"publication_date":"2010-08-17","ids":{"openalex":"https://openalex.org/W2159155807","doi":"https://doi.org/10.1002/prot.22849","mag":"2159155807","pmid":"https://pubmed.ncbi.nlm.nih.gov/20872556","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/2976774"},"language":"en","primary_location":{"id":"doi:10.1002/prot.22849","doi":"https://doi.org/10.1002/prot.22849","is_oa":false,"landing_page_url":"https://doi.org/10.1002/prot.22849","pdf_url":null,"source":{"id":"https://openalex.org/S121161810","display_name":"Proteins Structure Function and Bioinformatics","issn_l":"0887-3585","issn":["0887-3585","1097-0134"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proteins: Structure, Function, and Bioinformatics","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC2976774/","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5105988967","display_name":"Julian Lee","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I141371507","display_name":"Soongsil University","ror":"https://ror.org/017xnm587","country_code":"KR","type":"education","lineage":["https://openalex.org/I141371507"]},{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"Julian Lee","raw_affiliation_strings":["Department of Bioinformatics and Life Science, Soongsil University, Seoul 156-743, Korea. jul@ssu.ac.kr","Chaok Seok, Department of Chemistry, Seoul National University, Seoul 151-747, Korea===; Department of Pharmaceutical Chemistry, University of California, San Francisco, California 94158; Julian Lee and Dongseon Lee contributed equally to this work.; Julian Lee, Department of Bioinformatics and Life Science, Soongsil University, Seoul 156-743, Korea==="],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Life Science, Soongsil University, Seoul 156-743, Korea. jul@ssu.ac.kr","institution_ids":["https://openalex.org/I141371507"]},{"raw_affiliation_string":"Chaok Seok, Department of Chemistry, Seoul National University, Seoul 151-747, Korea===; Department of Pharmaceutical Chemistry, University of California, San Francisco, California 94158; Julian Lee and Dongseon Lee contributed equally to this work.; Julian Lee, Department of Bioinformatics and Life Science, Soongsil University, Seoul 156-743, Korea===","institution_ids":["https://openalex.org/I139264467","https://openalex.org/I141371507","https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036947592","display_name":"Dongseon Lee","orcid":"https://orcid.org/0000-0002-0803-5588","observed_orcids":["https://orcid.org/0000-0002-0803-5588"]},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Dongseon Lee","raw_affiliation_strings":["Department of Chemistry, Seoul National University, Seoul 151-747, Korea","Department of Chemistry, Seoul National University, Seoul 151-747, Korea; Julian Lee and Dongseon Lee contributed equally to this work"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Seoul National University, Seoul 151-747, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Department of Chemistry, Seoul National University, Seoul 151-747, Korea; Julian Lee and Dongseon Lee contributed equally to this work","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011280743","display_name":"Hahnbeom Park","orcid":"https://orcid.org/0000-0002-7129-1912","observed_orcids":["https://orcid.org/0000-0002-7129-1912"]},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hahnbeom Park","raw_affiliation_strings":["Department of Chemistry, Seoul National University, Seoul 151-747, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Seoul National University, Seoul 151-747, Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076012363","display_name":"Evangelos A. Coutsias","orcid":"https://orcid.org/0000-0003-2910-9125","observed_orcids":["https://orcid.org/0000-0003-2910-9125"]},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Evangelos A. Coutsias","raw_affiliation_strings":["Department of Mathematics and Statistics, University of New Mexico, Albuquerque, NM 87131, USA","Department of Mathematics and Statistics, University of New Mexico, Albuquerque, New Mexico 87131"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of New Mexico, Albuquerque, NM 87131, USA","institution_ids":["https://openalex.org/I169521973"]},{"raw_affiliation_string":"Department of Mathematics and Statistics, University of New Mexico, Albuquerque, New Mexico 87131","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003116915","display_name":"Chaok Seok","orcid":"https://orcid.org/0000-0002-1419-9888","observed_orcids":["https://orcid.org/0000-0002-1419-9888"]},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I141371507","display_name":"Soongsil University","ror":"https://ror.org/017xnm587","country_code":"KR","type":"education","lineage":["https://openalex.org/I141371507"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Chaok Seok","raw_affiliation_strings":["Department of Chemistry, Seoul National University, Seoul 151-747, Korea","Department of Chemistry, Seoul National University, Seoul 151-747, Korea; Julian Lee, Department of Bioinformatics and Life Science, Soongsil University, Seoul 156-743, Korea==="],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Seoul National University, Seoul 151-747, Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Department of Chemistry, Seoul National University, Seoul 151-747, Korea; Julian Lee, Department of Bioinformatics and Life Science, Soongsil University, Seoul 156-743, Korea===","institution_ids":["https://openalex.org/I139264467","https://openalex.org/I141371507"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4550,"currency":"USD","value_usd":4550},"apc_paid":null,"fwci":4.5663,"has_fulltext":false,"cited_by_count":107,"citation_normalized_percentile":{"value":0.9632586,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":100},"biblio":{"volume":"78","issue":"16","first_page":"3428","last_page":"3436"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.0012000000569969416,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fragment-assembly","display_name":"fragment assembly","score":0.9039999842643738}],"concepts":[{"id":"https://openalex.org/C184670325","wikidata":"https://www.wikidata.org/wiki/Q512604","display_name":"Loop (graph theory)","level":2,"score":0.7741904854774475},{"id":"https://openalex.org/C89025888","wikidata":"https://www.wikidata.org/wiki/Q911907","display_name":"Dihedral angle","level":4,"score":0.7639726400375366},{"id":"https://openalex.org/C45475804","wikidata":"https://www.wikidata.org/wiki/Q6675846","display_name":"Loop modeling","level":4,"score":0.7450160980224609},{"id":"https://openalex.org/C146834321","wikidata":"https://www.wikidata.org/wiki/Q2979672","display_name":"Closure (psychology)","level":2,"score":0.5068190693855286},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.470040500164032},{"id":"https://openalex.org/C2776235265","wikidata":"https://www.wikidata.org/wiki/Q18392052","display_name":"Fragment (logic)","level":2,"score":0.46866095066070557},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.44876715540885925},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.42559918761253357},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3311440646648407},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.324523389339447},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.2995838522911072},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.28140872716903687},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2749131917953491},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22409063577651978},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17399898171424866},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.10233160853385925},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.1001872718334198},{"id":"https://openalex.org/C34447519","wikidata":"https://www.wikidata.org/wiki/Q179522","display_name":"Market economy","level":1,"score":0.0},{"id":"https://openalex.org/C112887158","wikidata":"https://www.wikidata.org/wiki/Q169324","display_name":"Hydrogen bond","level":3,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1002/prot.22849","doi":"https://doi.org/10.1002/prot.22849","is_oa":false,"landing_page_url":"https://doi.org/10.1002/prot.22849","pdf_url":null,"source":{"id":"https://openalex.org/S121161810","display_name":"Proteins Structure Function and Bioinformatics","issn_l":"0887-3585","issn":["0887-3585","1097-0134"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proteins: Structure, Function, and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20872556","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20872556","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proteins","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2976774","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC2976774/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Proteins","raw_type":"Text"},{"id":"mag:2339586443","doi":null,"is_oa":false,"landing_page_url":"https://www.math.unm.edu/~vageli/papers/FALC.pdf","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:2976774","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC2976774/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Proteins","raw_type":"Text"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G4465623258","display_name":"Physics-Based Refinement of Comparative Protein Models","funder_award_id":"R01GM081710","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6489243115","display_name":"New Mathematical Methods for Protein Loop Modeling","funder_award_id":"R01GM090205","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":70,"referenced_works":["https://openalex.org/W1485294766","https://openalex.org/W1545404810","https://openalex.org/W1548178570","https://openalex.org/W1603231983","https://openalex.org/W1971853518","https://openalex.org/W1971886065","https://openalex.org/W1972026510","https://openalex.org/W1972787242","https://openalex.org/W1973108707","https://openalex.org/W1977468964","https://openalex.org/W1977516475","https://openalex.org/W1980374511","https://openalex.org/W1997207653","https://openalex.org/W1998470735","https://openalex.org/W2000443388","https://openalex.org/W2003331005","https://openalex.org/W2005126631","https://openalex.org/W2007626550","https://openalex.org/W2007804411","https://openalex.org/W2009144168","https://openalex.org/W2013238066","https://openalex.org/W2015403140","https://openalex.org/W2018562664","https://openalex.org/W2019476648","https://openalex.org/W2026207861","https://openalex.org/W2027189612","https://openalex.org/W2027408247","https://openalex.org/W2027638447","https://openalex.org/W2027759592","https://openalex.org/W2032443627","https://openalex.org/W2032851884","https://openalex.org/W2033279214","https://openalex.org/W2047730466","https://openalex.org/W2049902088","https://openalex.org/W2051900899","https://openalex.org/W2052935924","https://openalex.org/W2054154028","https://openalex.org/W2055404190","https://openalex.org/W2059778703","https://openalex.org/W2064747164","https://openalex.org/W2067484689","https://openalex.org/W2071423550","https://openalex.org/W2073346652","https://openalex.org/W2075066347","https://openalex.org/W2079627474","https://openalex.org/W2096569410","https://openalex.org/W2109402847","https://openalex.org/W2110890402","https://openalex.org/W2122557656","https://openalex.org/W2125677968","https://openalex.org/W2128941049","https://openalex.org/W2129153475","https://openalex.org/W2132497553","https://openalex.org/W2136297983","https://openalex.org/W2137604324","https://openalex.org/W2140508442","https://openalex.org/W2145358391","https://openalex.org/W2146097584","https://openalex.org/W2148676725","https://openalex.org/W2153187042","https://openalex.org/W2154106236","https://openalex.org/W2158307923","https://openalex.org/W2158714788","https://openalex.org/W2162219170","https://openalex.org/W2167612644","https://openalex.org/W2170471837","https://openalex.org/W2484878711","https://openalex.org/W2516252822","https://openalex.org/W3201413583","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2339586443","https://openalex.org/W2153314828","https://openalex.org/W2970543766","https://openalex.org/W7098122847","https://openalex.org/W2142341225","https://openalex.org/W2160426811","https://openalex.org/W2097546936","https://openalex.org/W2137604324","https://openalex.org/W2036499039","https://openalex.org/W7096538578"],"abstract_inverted_index":{"Protein":[0],"loops":[1,23],"are":[2,51],"often":[3],"involved":[4],"in":[5,98],"important":[6],"biological":[7],"functions":[8],"such":[9],"as":[10],"molecular":[11,30],"recognition,":[12],"signal":[13],"transduction,":[14],"or":[15,116,127,149],"enzymatic":[16],"action.":[17],"The":[18,60,104],"three":[19],"dimensional":[20],"structures":[21],"of":[22,91,95,101,159,162],"can":[24,106],"provide":[25],"essential":[26],"information":[27],"for":[28,43,88,118,121,128],"understanding":[29],"mechanisms":[31],"behind":[32],"protein":[33,44],"functions.":[34],"In":[35],"this":[36],"article,":[37],"we":[38],"develop":[39],"a":[40],"novel":[41],"method":[42,63,74,139],"loop":[45,49,58,72,79,137,151,160],"modeling,":[46],"where":[47],"the":[48,65,70,76,89,99,135],"conformations":[50,80],"generated":[52],"by":[53],"fragment":[54,61],"assembly":[55,62],"and":[56,69],"analytical":[57,71,93],"closure.":[59],"reduces":[64],"conformational":[66],"space":[67,100],"drastically,":[68],"closure":[73,152],"finds":[75],"geometrically":[77],"consistent":[78],"efficiently.":[81],"We":[82,132],"also":[83],"derive":[84],"an":[85],"analytic":[86],"formula":[87],"gradient":[90,105],"any":[92],"function":[94],"dihedral":[96],"angles":[97],"closed":[102],"loops.":[103],"be":[107],"used":[108],"to":[109,167],"optimize":[110],"various":[111],"restraints":[112,120],"derived":[113],"from":[114,165],"experiments":[115],"databases,":[117],"example":[119],"preferential":[122],"interactions":[123],"between":[124],"specific":[125],"residues":[126],"preferred":[129],"backbone":[130],"angles.":[131],"demonstrate":[133],"that":[134,143],"current":[136],"modeling":[138],"outperforms":[140],"previous":[141],"methods":[142],"employ":[144],"residue-based":[145],"torsion":[146],"angle":[147],"maps":[148],"different":[150],"strategies":[153],"when":[154],"tested":[155],"on":[156],"two":[157],"sets":[158],"targets":[161],"lengths":[163],"ranging":[164],"4":[166],"12.":[168]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":18},{"year":2012,"cited_by_count":16}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2016-06-24T00:00:00"}
