{"id":"https://openalex.org/W2152115049","doi":null,"title":"Phylogenetic groups and virulence factors in pathogenic and commensal strains of Escherichia coli and their association with blaCTX-M.","display_name":"Phylogenetic groups and virulence factors in pathogenic and commensal strains of Escherichia coli and their association with blaCTX-M.","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W2152115049","mag":"2152115049","pmid":"https://pubmed.ncbi.nlm.nih.gov/20947811"},"language":"en","primary_location":{"id":"pmid:20947811","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20947811","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annals of clinical and laboratory science","raw_type":"Journal Article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084942960","display_name":"Seungok Lee","orcid":"https://orcid.org/0000-0003-4538-8427","observed_orcids":["https://orcid.org/0000-0003-4538-8427"]},"institutions":[{"id":"https://openalex.org/I87111246","display_name":"Catholic University of Korea","ror":"https://ror.org/01fpnj063","country_code":"KR","type":"education","lineage":["https://openalex.org/I87111246"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Seungok Lee","raw_affiliation_strings":["Dept. of Laboratory Medicine, The Catholic University of Korea, Seoul, Korea","Department of Laboratory Medicine, The Catholic University of Korea, Seoul, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Laboratory Medicine, The Catholic University of Korea, Seoul, Korea","institution_ids":["https://openalex.org/I87111246"]},{"raw_affiliation_string":"Department of Laboratory Medicine, The Catholic University of Korea, Seoul, Korea","institution_ids":["https://openalex.org/I87111246"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101893315","display_name":"Jin Kyung Yu","orcid":"https://orcid.org/0000-0001-7986-5872","observed_orcids":["https://orcid.org/0000-0001-7986-5872"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jin Kyung Yu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074928738","display_name":"Kang-Gyun Park","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kanggyun Park","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087339024","display_name":"Eun\u2010Jee Oh","orcid":"https://orcid.org/0000-0001-5870-915X","observed_orcids":["https://orcid.org/0000-0001-5870-915X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Eun-Jee Oh","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100694012","display_name":"Soo\u2010Young Kim","orcid":"https://orcid.org/0000-0003-3632-8246","observed_orcids":["https://orcid.org/0000-0003-3632-8246","https://orcid.org/0009-0007-3345-9669"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Soo-Young Kim","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5012335710","display_name":"Yeon-Joon Park","orcid":"https://orcid.org/0000-0003-2182-5821","observed_orcids":["https://orcid.org/0000-0003-2182-5821"]},"institutions":[{"id":"https://openalex.org/I87111246","display_name":"Catholic University of Korea","ror":"https://ror.org/01fpnj063","country_code":"KR","type":"education","lineage":["https://openalex.org/I87111246"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Yeon-Joon Park","raw_affiliation_strings":["Catholic University of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Catholic University of Korea","institution_ids":["https://openalex.org/I87111246"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.9041,"has_fulltext":false,"cited_by_count":57,"citation_normalized_percentile":{"value":0.83423743,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":99},"biblio":{"volume":"40","issue":"4","first_page":"361","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10943","display_name":"Escherichia coli research studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10943","display_name":"Escherichia coli research studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.0006000000284984708,"subfield":{"id":"https://openalex.org/subfields/2726","display_name":"Microbiology (medical)"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13849","display_name":"Enterobacteriaceae and Cronobacter Research","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.972000002861023},{"id":"https://openalex.org/keywords/phylogroups","display_name":"phylogenetic groups","score":0.9940000176429749},{"id":"https://openalex.org/keywords/virulence-factors","display_name":"virulence factors","score":0.9860000014305115},{"id":"https://openalex.org/keywords/commensal-strains","display_name":"commensal strains","score":0.7710000276565552},{"id":"https://openalex.org/keywords/pathogenic-strains","display_name":"pathogenic strains","score":0.9559999704360962},{"id":"https://openalex.org/keywords/blactx-m","display_name":"blaCTX-M","score":0.9160000085830688},{"id":"https://openalex.org/keywords/extended-spectrum-beta-lactamase","display_name":"extended-spectrum beta-lactamase","score":0.8830000162124634},{"id":"https://openalex.org/keywords/iuta","display_name":"iutA","score":0.6790000200271606},{"id":"https://openalex.org/keywords/trat","display_name":"traT","score":0.9509999752044678},{"id":"https://openalex.org/keywords/alpha-hemolysin","display_name":"alpha-hemolysin","score":0.8510000109672546},{"id":"https://openalex.org/keywords/serum-resistance","display_name":"serum resistance","score":0.6880000233650208},{"id":"https://openalex.org/keywords/antimicrobial-resistance","display_name":"antimicrobial resistance","score":0.6460000276565552},{"id":"https://openalex.org/keywords/fecal-isolates","display_name":"fecal isolates","score":0.8600000143051147}],"concepts":[{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.921264111995697},{"id":"https://openalex.org/C2778487981","wikidata":"https://www.wikidata.org/wiki/Q2875340","display_name":"Aerobactin","level":5,"score":0.8391358852386475},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7899349927902222},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7628823518753052},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.7348229289054871},{"id":"https://openalex.org/C61716771","wikidata":"https://www.wikidata.org/wiki/Q496","display_name":"Feces","level":2,"score":0.6314771175384521},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.5985191464424133},{"id":"https://openalex.org/C136139683","wikidata":"https://www.wikidata.org/wiki/Q2746278","display_name":"Hemolysin","level":4,"score":0.5917262434959412},{"id":"https://openalex.org/C31467283","wikidata":"https://www.wikidata.org/wiki/Q912147","display_name":"Genotyping","level":4,"score":0.5716007947921753},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.4354117214679718},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3558914363384247},{"id":"https://openalex.org/C2778910516","wikidata":"https://www.wikidata.org/wiki/Q380136","display_name":"Enterobacteriaceae","level":4,"score":0.3033142685890198},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24010872840881348}],"mesh":[{"descriptor_ui":"D001618","descriptor_name":"beta-Lactamases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":true},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014774","descriptor_name":"Virulence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D037521","descriptor_name":"Virulence Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D037521","descriptor_name":"Virulence Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":3,"locations":[{"id":"pmid:20947811","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20947811","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annals of clinical and laboratory science","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.995.6730","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.995.6730","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.annclinlabsci.org/content/40/4/361.full.pdf","raw_type":"text"},{"id":"mag:2152115049","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20947811","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"PubMed","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.9763000011444092,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1821016187","https://openalex.org/W1936558627","https://openalex.org/W1944602501","https://openalex.org/W1988516580","https://openalex.org/W2014298338","https://openalex.org/W2018216113","https://openalex.org/W2022178880","https://openalex.org/W2094009181","https://openalex.org/W2106234394","https://openalex.org/W2116764759","https://openalex.org/W2118795504","https://openalex.org/W2121423109","https://openalex.org/W2126462854","https://openalex.org/W2129878068","https://openalex.org/W2134372941","https://openalex.org/W2138139644","https://openalex.org/W2145453521","https://openalex.org/W2146603774","https://openalex.org/W2156419995","https://openalex.org/W2164951804","https://openalex.org/W2171955051","https://openalex.org/W2281726765"],"related_works":["https://openalex.org/W7096015444","https://openalex.org/W2094009181","https://openalex.org/W2134372941","https://openalex.org/W2054281498","https://openalex.org/W2313570885","https://openalex.org/W2141167400","https://openalex.org/W2337296285","https://openalex.org/W2905483076","https://openalex.org/W3028533165","https://openalex.org/W2917323591"],"abstract_inverted_index":{"We":[0],"compared":[1,33],"the":[2,12,34,41,46,209],"distribution":[3,93],"of":[4,24,28,36,43,51,94,143,192],"phylogenetic":[5,95,167],"groups":[6,96,126],"and":[7,17,19,31,70,86,103,122,128,134,161,179,191,195,204,227],"nine":[8],"virulence":[9,37,71,145,213],"factors":[10,38,146],"among":[11,45,137],"pathogenic":[13,47,81,155],"(isolated":[14,21],"from":[15,22,58,61,64,101,139],"blood":[16,102],"urine)":[18],"commensal":[20,159],"feces":[23],"healthy":[25],"individuals)":[26],"strains":[27,156,160],"Escherichia":[29],"coli,":[30],"also":[32,131],"occurrence":[35],"according":[39],"to":[40,185,222,231],"production":[42],"(bla)(CTX-M)":[44,89],"strains.":[48],"A":[49,115],"total":[50],"550":[52],"non-duplicate":[53],"E.":[54],"coli":[55],"isolates":[56,100,138],"(145":[57],"blood,":[59],"200":[60],"urine,":[62],"205":[63],"feces)":[65],"were":[66,73,90,130,163,183,197],"collected.":[67],"Phylogenetic":[68,125],"grouping":[69],"genotyping":[72],"done":[74],"by":[75],"PCR":[76,87],"for":[77,88,189],"all":[78,144],"isolates.":[79],"For":[80],"strains,":[82,224],"antimicrobial":[83,217],"susceptibility":[84],"tests":[85],"performed.":[91],"The":[92,141],"was":[97,151],"similar":[98],"between":[99],"urine:":[104],"B2":[105,127],"(44.8%;":[106],"58.5%,":[107],"respectively)":[108,113,118,136],">":[109,114,119],"D":[110,129],"(29.0%;":[111],"23.0%,":[112],"(18.6%;":[116],"9.5%,":[117],"B1":[120],"(7.6%":[121],"9.0%,":[123],"respectively).":[124],"frequent":[132,165],"(22.9%":[133],"21.0%,":[135],"feces.":[140],"prevalence":[142],"except":[147],"S":[148],"fimbrial":[149],"adhesion":[150],"significantly":[152,198],"higher":[153],"in":[154,158,166,201],"than":[157],"they":[162],"most":[164],"group":[168],"B2.":[169],"\u03b1-Haemolysin,":[170],"yersiniabactin":[171],"receptor,":[172],"serum":[173],"resistance-associated":[174],"outer":[175],"membrane":[176],"protein":[177],"(traT),":[178],"aerobactin":[180],"receptor":[181],"(iutA)":[182],"found":[184],"be":[186,232],"independent":[187],"predictors":[188],"pathogenicity,":[190],"them,":[193],"iutA":[194],"traT":[196],"more":[199],"common":[200],"(bla)(CTX-M-1":[202],"group)":[203],"(bla)(CTX-M-9":[205],"group,)":[206],"respectively.":[207],"Considering":[208],"possibility":[210],"that":[211],"these":[212],"genes,":[214,219],"together":[215],"with":[216],"resistance":[218],"can":[220],"spread":[221],"other":[223],"further":[225],"study":[226],"ongoing":[228],"surveillance":[229],"seem":[230],"required.":[233]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":2}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}