{"id":"https://openalex.org/W2147336135","doi":"https://doi.org/10.1074/mcp.m113.033951","title":"Temporal Dynamics of the Saccharopolyspora erythraea Phosphoproteome","display_name":"Temporal Dynamics of the Saccharopolyspora erythraea Phosphoproteome","publication_year":2014,"publication_date":"2014-03-10","ids":{"openalex":"https://openalex.org/W2147336135","doi":"https://doi.org/10.1074/mcp.m113.033951","mag":"2147336135","pmid":"https://pubmed.ncbi.nlm.nih.gov/24615062","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/4014280"},"language":"en","primary_location":{"id":"doi:10.1074/mcp.m113.033951","doi":"https://doi.org/10.1074/mcp.m113.033951","is_oa":true,"landing_page_url":"https://doi.org/10.1074/mcp.m113.033951","pdf_url":"https://www.mcponline.org/content/mcprot/13/5/1219.full.pdf","source":{"id":"https://openalex.org/S104550190","display_name":"Molecular & Cellular Proteomics","issn_l":"1535-9476","issn":["1535-9476","1535-9484"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-140","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular &amp; Cellular Proteomics","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://www.mcponline.org/content/mcprot/13/5/1219.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077088332","display_name":"Cuauht\u00e9moc Licona\u2010Cassani","orcid":"https://orcid.org/0000-0002-0360-3945","observed_orcids":["https://orcid.org/0000-0002-0360-3945"]},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Cuauhtemoc Licona-Cassani","raw_affiliation_strings":["\u00a7Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland, St Lucia, QLD 4072, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"\u00a7Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland, St Lucia, QLD 4072, Australia","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087247260","display_name":"Sooa Lim","orcid":"https://orcid.org/0000-0003-0020-8250","observed_orcids":["https://orcid.org/0000-0003-0020-8250"]},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"SooA Lim","raw_affiliation_strings":["From the Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland, St Lucia, QLD 4072, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"From the Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland, St Lucia, QLD 4072, Australia","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082228050","display_name":"Esteban Marcellin","orcid":"https://orcid.org/0000-0003-3173-7956","observed_orcids":["https://orcid.org/0000-0003-3173-7956"]},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Esteban Marcellin","raw_affiliation_strings":["From the Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland, St Lucia, QLD 4072, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"From the Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland, St Lucia, QLD 4072, Australia","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061172047","display_name":"Lars Keld Nielsen","orcid":"https://orcid.org/0000-0001-8191-3511","observed_orcids":["https://orcid.org/0000-0001-8191-3511","https://orcid.org/0000-0001-9537-0335"]},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Lars K. Nielsen","raw_affiliation_strings":["From the Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland, St Lucia, QLD 4072, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"From the Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland, St Lucia, QLD 4072, Australia","institution_ids":["https://openalex.org/I165143802"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5082228050"],"corresponding_institution_ids":["https://openalex.org/I165143802"],"apc_list":{"value":3430,"currency":"USD","value_usd":3430},"apc_paid":{"value":3430,"currency":"USD","value_usd":3430},"fwci":2.1754,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.86030664,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"13","issue":"5","first_page":"1219","last_page":"1230"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.8637999892234802,"subfield":{"id":"https://openalex.org/subfields/2402","display_name":"Applied Microbiology and Biotechnology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.8637999892234802,"subfield":{"id":"https://openalex.org/subfields/2402","display_name":"Applied Microbiology and Biotechnology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.06340000033378601,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.0568000003695488,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/saccharopolyspora-erythraea","display_name":"Saccharopolyspora erythraea","score":0.9980000257492065},{"id":"https://openalex.org/keywords/phosphoproteome","display_name":"phosphoproteome","score":0.7229999899864197},{"id":"https://openalex.org/keywords/protein-phosphorylation","display_name":"protein phosphorylation","score":0.9409999847412109},{"id":"https://openalex.org/keywords/metabolic-switch","display_name":"metabolic switch","score":0.925000011920929},{"id":"https://openalex.org/keywords/actinomycetes","display_name":"actinomycetes","score":0.9160000085830688},{"id":"https://openalex.org/keywords/growth-arrest","display_name":"growth arrest","score":0.7269999980926514},{"id":"https://openalex.org/keywords/secondary-metabolite-biosynthesis","display_name":"secondary metabolite biosynthesis","score":0.9739999771118164},{"id":"https://openalex.org/keywords/central-carbon-metabolism","display_name":"central carbon metabolism","score":0.7289999723434448},{"id":"https://openalex.org/keywords/translational-control","display_name":"translational regulation","score":0.8209999799728394},{"id":"https://openalex.org/keywords/ribosomal-protein-s6","display_name":"ribosomal protein S6","score":0.7850000262260437},{"id":"https://openalex.org/keywords/trypsin-like-serine-protease","display_name":"trypsin-like serine protease","score":0.9300000071525574},{"id":"https://openalex.org/keywords/stationary-phase","display_name":"stationary phase","score":0.7269999980926514}],"concepts":[{"id":"https://openalex.org/C145912823","wikidata":"https://www.wikidata.org/wiki/Q113558","display_name":"Dynamics (music)","level":2,"score":0.4924224615097046},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4541045129299164},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.383425772190094},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2988801598548889},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.05907702445983887},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D005285","descriptor_name":"Fermentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010748","descriptor_name":"Phosphopeptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016930","descriptor_name":"Saccharopolyspora","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":true},{"descriptor_ui":"D016930","descriptor_name":"Saccharopolyspora","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1074/mcp.m113.033951","doi":"https://doi.org/10.1074/mcp.m113.033951","is_oa":true,"landing_page_url":"https://doi.org/10.1074/mcp.m113.033951","pdf_url":"https://www.mcponline.org/content/mcprot/13/5/1219.full.pdf","source":{"id":"https://openalex.org/S104550190","display_name":"Molecular & Cellular Proteomics","issn_l":"1535-9476","issn":["1535-9476","1535-9484"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-140","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular &amp; Cellular Proteomics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4014280","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4014280","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mol Cell Proteomics","raw_type":"Text"},{"id":"pmid:24615062","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24615062","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular & cellular proteomics : MCP","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.936.6587","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.936.6587","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.mcponline.org/content/13/5/1219.full.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1074/mcp.m113.033951","doi":"https://doi.org/10.1074/mcp.m113.033951","is_oa":true,"landing_page_url":"https://doi.org/10.1074/mcp.m113.033951","pdf_url":"https://www.mcponline.org/content/mcprot/13/5/1219.full.pdf","source":{"id":"https://openalex.org/S104550190","display_name":"Molecular & Cellular Proteomics","issn_l":"1535-9476","issn":["1535-9476","1535-9484"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-140","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular &amp; Cellular Proteomics","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G2685209063","display_name":null,"funder_award_id":"2010002194","funder_id":"https://openalex.org/F4320320984","funder_display_name":"University of Queensland"}],"funders":[{"id":"https://openalex.org/F4320320984","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2147336135.pdf","grobid_xml":"https://content.openalex.org/works/W2147336135.grobid-xml"},"referenced_works_count":67,"referenced_works":["https://openalex.org/W1486737400","https://openalex.org/W1495179683","https://openalex.org/W1498116779","https://openalex.org/W1545982832","https://openalex.org/W1839672289","https://openalex.org/W1904782847","https://openalex.org/W1971066567","https://openalex.org/W1974505306","https://openalex.org/W1975690561","https://openalex.org/W1990762571","https://openalex.org/W1993643129","https://openalex.org/W1998755383","https://openalex.org/W1998789839","https://openalex.org/W1999022862","https://openalex.org/W1999670767","https://openalex.org/W2001176819","https://openalex.org/W2001977333","https://openalex.org/W2004159979","https://openalex.org/W2006959770","https://openalex.org/W2009150725","https://openalex.org/W2009156161","https://openalex.org/W2010502100","https://openalex.org/W2013853442","https://openalex.org/W2015984470","https://openalex.org/W2017981851","https://openalex.org/W2020338736","https://openalex.org/W2035483694","https://openalex.org/W2038163496","https://openalex.org/W2056253073","https://openalex.org/W2060211561","https://openalex.org/W2064237529","https://openalex.org/W2064910808","https://openalex.org/W2073329740","https://openalex.org/W2077261875","https://openalex.org/W2077354879","https://openalex.org/W2077433124","https://openalex.org/W2079380500","https://openalex.org/W2079614167","https://openalex.org/W2082020508","https://openalex.org/W2084082495","https://openalex.org/W2085246416","https://openalex.org/W2089367187","https://openalex.org/W2095232949","https://openalex.org/W2095381145","https://openalex.org/W2096209101","https://openalex.org/W2097865522","https://openalex.org/W2098446919","https://openalex.org/W2105192683","https://openalex.org/W2115129497","https://openalex.org/W2116236963","https://openalex.org/W2117665293","https://openalex.org/W2117732632","https://openalex.org/W2120255698","https://openalex.org/W2123519545","https://openalex.org/W2130904027","https://openalex.org/W2150936918","https://openalex.org/W2153065510","https://openalex.org/W2154302244","https://openalex.org/W2158217645","https://openalex.org/W2159686118","https://openalex.org/W2167008591","https://openalex.org/W2168772506","https://openalex.org/W2169040919","https://openalex.org/W2169428439","https://openalex.org/W2169942471","https://openalex.org/W2313346828","https://openalex.org/W3000547444"],"related_works":["https://openalex.org/W7096970245","https://openalex.org/W816087345","https://openalex.org/W1559612081","https://openalex.org/W2063048494","https://openalex.org/W2056286476","https://openalex.org/W417290961","https://openalex.org/W2540195629","https://openalex.org/W2117665293","https://openalex.org/W3199352267","https://openalex.org/W1992687305"],"abstract_inverted_index":{"Actinomycetes":[0],"undergo":[1],"a":[2,11,58],"dramatic":[3],"reorganization":[4],"of":[5,14,25,34,49,71,111,123,128,161,174,176,186,200,224,235,244],"metabolic":[6,39,118,183,216],"and":[7,22,66,74,103,125,192,213,231],"cellular":[8,137],"machinery":[9],"during":[10,113,149,168,181,197],"brief":[12],"period":[13],"growth":[15,151],"arrest":[16,152],"(\"metabolic":[17],"switch\")":[18],"preceding":[19],"mycelia":[20],"differentiation":[21],"the":[23,32,38,42,72,109,114,121,126,150,159,172,182,201,204,215,221,241],"onset":[24],"secondary":[26],"metabolite":[27],"biosynthesis.":[28],"This":[29],"study":[30],"explores":[31],"role":[33],"phosphorylation":[35,112,148,166,175,238],"in":[36,41,108,136,147],"coordinating":[37],"switch":[40],"industrial":[43],"actinomycete":[44],"Saccharopolyspora":[45],"erythraea.":[46],"A":[47,99],"total":[48,87],"109":[50],"phosphopeptides":[51,73],"from":[52,91],"88":[53],"proteins":[54],"were":[55],"detected":[56],"across":[57,240],"150-h":[59],"fermentation":[60],"using":[61],"open-profile":[62],"two-dimensional":[63],"LC-MS":[64],"proteomics":[65],"TiO(2)":[67],"enrichment.":[68],"Quantitative":[69],"analysis":[70],"their":[75],"unphosphorylated":[76],"cognates":[77],"was":[78],"possible":[79],"for":[80,120],"20":[81],"pairs":[82],"that":[83,185,206],"also":[84],"displayed":[85],"constant":[86],"protein":[88,162,237],"expression.":[89],"Enzymes":[90],"central":[92],"carbon":[93],"metabolism":[94],"such":[95],"as":[96],"putative":[97],"acetyl-coenzyme":[98],"carboxylase,":[100],"isocitrate":[101],"lyase,":[102],"2-oxoglutarate":[104],"dehydrogenase":[105],"changed":[106],"dramatically":[107,195],"degree":[110,173],"stationary":[115],"phase,":[116],"suggesting":[117],"rearrangement":[119],"reutilization":[122],"substrates":[124],"production":[127],"polyketide":[129],"precursors.":[130],"In":[131],"addition,":[132],"an":[133],"enzyme":[134],"involved":[135],"response":[138],"to":[139,158,227],"environmental":[140],"stress,":[141],"trypsin-like":[142],"serine":[143],"protease":[144],"(SACE_6340/NC_009142_6216),":[145],"decreased":[146,196],"stage.":[153,170],"More":[154],"important,":[155],"enzymes":[156],"related":[157],"regulation":[160],"synthesis":[163],"underwent":[164],"rapid":[165],"changes":[167],"this":[169,198],"Whereas":[171],"ribonuclease":[177],"Rne/Rng":[178],"(SACE_1406/NC_009142_1388)":[179],"increased":[180],"switch,":[184],"two":[187],"ribosomal":[188],"proteins,":[189],"S6":[190],"(SACE_7351/NC_009142_7233)":[191],"S32":[193],"(SACE_6101/NC_009142_5981),":[194],"stage":[199],"fermentation,":[202],"supporting":[203],"hypothesis":[205],"ribosome":[207],"subpopulations":[208],"differentially":[209],"regulate":[210],"translation":[211],"before":[212],"after":[214],"switch.":[217],"Overall,":[218],"we":[219],"show":[220],"great":[222],"potential":[223],"phosphoproteomic":[225],"studies":[226],"explain":[228],"microbial":[229],"physiology":[230],"specifically":[232],"provide":[233],"evidence":[234],"dynamic":[236],"events":[239],"developmental":[242],"cycle":[243],"actinomycetes.":[245]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":2}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}
