{"id":"https://openalex.org/W2144897567","doi":"https://doi.org/10.1099/ijs.0.018507-0","title":"Alkalibaculum bacchi gen. nov., sp. nov., a CO-oxidizing, ethanol-producing acetogen isolated from livestock-impacted soil","display_name":"Alkalibaculum bacchi gen. nov., sp. nov., a CO-oxidizing, ethanol-producing acetogen isolated from livestock-impacted soil","publication_year":2009,"publication_date":"2009-12-05","ids":{"openalex":"https://openalex.org/W2144897567","doi":"https://doi.org/10.1099/ijs.0.018507-0","mag":"2144897567","pmid":"https://pubmed.ncbi.nlm.nih.gov/19965999"},"language":"en","primary_location":{"id":"doi:10.1099/ijs.0.018507-0","doi":"https://doi.org/10.1099/ijs.0.018507-0","is_oa":false,"landing_page_url":"https://doi.org/10.1099/ijs.0.018507-0","pdf_url":null,"source":{"id":"https://openalex.org/S102181007","display_name":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","issn_l":"1466-5026","issn":["1466-5026","1466-5034"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-3","vabb-shw"],"host_organization":"https://openalex.org/P4310320497","host_organization_name":"Microbiology Society","host_organization_lineage":["https://openalex.org/P4310320497"],"host_organization_lineage_names":["Microbiology Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Systematic and Evolutionary Microbiology","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113139367","display_name":"Toby D. Allen","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I8692664","display_name":"University of Oklahoma","ror":"https://ror.org/02aqsxs83","country_code":"US","type":"education","lineage":["https://openalex.org/I8692664"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Toby D. Allen","raw_affiliation_strings":["Department of Botany and Microbiology, University of Oklahoma, Norman, OK 73019, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany and Microbiology, University of Oklahoma, Norman, OK 73019, USA","institution_ids":["https://openalex.org/I8692664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110351655","display_name":"Matthew E. Caldwell","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I8692664","display_name":"University of Oklahoma","ror":"https://ror.org/02aqsxs83","country_code":"US","type":"education","lineage":["https://openalex.org/I8692664"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew E. Caldwell","raw_affiliation_strings":["Department of Botany and Microbiology, University of Oklahoma, Norman, OK 73019, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany and Microbiology, University of Oklahoma, Norman, OK 73019, USA","institution_ids":["https://openalex.org/I8692664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091682172","display_name":"Paul A. Lawson","orcid":"https://orcid.org/0000-0002-0113-4751","observed_orcids":["https://orcid.org/0000-0002-0113-4751"]},"institutions":[{"id":"https://openalex.org/I8692664","display_name":"University of Oklahoma","ror":"https://ror.org/02aqsxs83","country_code":"US","type":"education","lineage":["https://openalex.org/I8692664"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul A. Lawson","raw_affiliation_strings":["Department of Botany and Microbiology, University of Oklahoma, Norman, OK 73019, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany and Microbiology, University of Oklahoma, Norman, OK 73019, USA","institution_ids":["https://openalex.org/I8692664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038667483","display_name":"Raymond L. Huhnke","orcid":"https://orcid.org/0000-0003-1045-4877","observed_orcids":["https://orcid.org/0000-0003-1045-4877"]},"institutions":[{"id":"https://openalex.org/I115475287","display_name":"Oklahoma State University","ror":"https://ror.org/01g9vbr38","country_code":"US","type":"education","lineage":["https://openalex.org/I115475287"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Raymond L. Huhnke","raw_affiliation_strings":["Department of Biosystems and Agricultural Engineering, Oklahoma State University, Stillwater, OK 74078, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems and Agricultural Engineering, Oklahoma State University, Stillwater, OK 74078, USA","institution_ids":["https://openalex.org/I115475287"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080005629","display_name":"Ralph S. Tanner","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I8692664","display_name":"University of Oklahoma","ror":"https://ror.org/02aqsxs83","country_code":"US","type":"education","lineage":["https://openalex.org/I8692664"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ralph S. Tanner","raw_affiliation_strings":["Department of Botany and Microbiology, University of Oklahoma, Norman, OK 73019, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany and Microbiology, University of Oklahoma, Norman, OK 73019, USA","institution_ids":["https://openalex.org/I8692664"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":5.2271,"has_fulltext":false,"cited_by_count":87,"citation_normalized_percentile":{"value":0.94748244,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":99},"biblio":{"volume":"60","issue":"10","first_page":"2483","last_page":"2489"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11231","display_name":"Microbial Fuel Cells and Bioremediation","score":0.24979999661445618,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11231","display_name":"Microbial Fuel Cells and Bioremediation","score":0.24979999661445618,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.23749999701976776,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10284","display_name":"Anaerobic Digestion and Biogas Production","score":0.2062000036239624,"subfield":{"id":"https://openalex.org/subfields/2105","display_name":"Renewable Energy, Sustainability and the Environment"},"field":{"id":"https://openalex.org/fields/21","display_name":"Energy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/novel-bacterial-genus","display_name":"novel bacterial genus","score":0.7269999980926514}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9271450638771057},{"id":"https://openalex.org/C42062724","wikidata":"https://www.wikidata.org/wiki/Q1209205","display_name":"16S ribosomal RNA","level":3,"score":0.7300087213516235},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.6342411637306213},{"id":"https://openalex.org/C2778312467","wikidata":"https://www.wikidata.org/wiki/Q132809","display_name":"Clostridia","level":3,"score":0.605196475982666},{"id":"https://openalex.org/C2776634448","wikidata":"https://www.wikidata.org/wiki/Q206920","display_name":"Peptidoglycan","level":3,"score":0.4999220371246338},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.49348604679107666},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.443809449672699},{"id":"https://openalex.org/C2776149385","wikidata":"https://www.wikidata.org/wiki/Q423953","display_name":"Trimethylamine","level":2,"score":0.4171689748764038},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.40692803263664246},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1836957037448883},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12408870458602905}],"mesh":[{"descriptor_ui":"D000431","descriptor_name":"Ethanol","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001224","descriptor_name":"Aspartic Acid","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D001482","descriptor_name":"Base Composition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002248","descriptor_name":"Carbon Monoxide","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002473","descriptor_name":"Cell Wall","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004275","descriptor_name":"DNA, Ribosomal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004275","descriptor_name":"DNA, Ribosomal","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005227","descriptor_name":"Fatty Acids","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D006090","descriptor_name":"Gram-Negative Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D006090","descriptor_name":"Gram-Negative Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006090","descriptor_name":"Gram-Negative Bacteria","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D006090","descriptor_name":"Gram-Negative Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008124","descriptor_name":"Locomotion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010084","descriptor_name":"Oxidation-Reduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010457","descriptor_name":"Peptidoglycan","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012988","descriptor_name":"Soil Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015373","descriptor_name":"Bacterial Typing Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019342","descriptor_name":"Acetic Acid","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D058751","descriptor_name":"Livestock","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1099/ijs.0.018507-0","doi":"https://doi.org/10.1099/ijs.0.018507-0","is_oa":false,"landing_page_url":"https://doi.org/10.1099/ijs.0.018507-0","pdf_url":null,"source":{"id":"https://openalex.org/S102181007","display_name":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","issn_l":"1466-5026","issn":["1466-5026","1466-5034"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-3","vabb-shw"],"host_organization":"https://openalex.org/P4310320497","host_organization_name":"Microbiology Society","host_organization_lineage":["https://openalex.org/P4310320497"],"host_organization_lineage_names":["Microbiology Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Systematic and Evolutionary Microbiology","raw_type":"journal-article"},{"id":"pmid:19965999","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19965999","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International journal of systematic and evolutionary microbiology","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W11404868","https://openalex.org/W163498145","https://openalex.org/W248014215","https://openalex.org/W589702940","https://openalex.org/W1498291278","https://openalex.org/W1528590781","https://openalex.org/W1553530062","https://openalex.org/W1565083030","https://openalex.org/W1581331584","https://openalex.org/W1596608691","https://openalex.org/W1971387380","https://openalex.org/W2006821496","https://openalex.org/W2015130131","https://openalex.org/W2029195137","https://openalex.org/W2041909141","https://openalex.org/W2058867396","https://openalex.org/W2059940386","https://openalex.org/W2078180382","https://openalex.org/W2078825884","https://openalex.org/W2087048063","https://openalex.org/W2097706568","https://openalex.org/W2101292507","https://openalex.org/W2103448494","https://openalex.org/W2120002859","https://openalex.org/W2125450434","https://openalex.org/W2128524551","https://openalex.org/W2141836311","https://openalex.org/W2142338791","https://openalex.org/W2148644769","https://openalex.org/W2150297520","https://openalex.org/W2151020563","https://openalex.org/W2161257408","https://openalex.org/W2165158499","https://openalex.org/W2165189685","https://openalex.org/W2165924947","https://openalex.org/W2170288051","https://openalex.org/W2221357574","https://openalex.org/W2224078765","https://openalex.org/W2322463469","https://openalex.org/W2502641562","https://openalex.org/W2887318190","https://openalex.org/W2923611692","https://openalex.org/W3021587187","https://openalex.org/W3135316096","https://openalex.org/W4210975998","https://openalex.org/W4297928928","https://openalex.org/W6609438844","https://openalex.org/W6617355420","https://openalex.org/W6636065711"],"related_works":["https://openalex.org/W2062328186","https://openalex.org/W4213328047","https://openalex.org/W2007732976","https://openalex.org/W2078464013","https://openalex.org/W4400288955","https://openalex.org/W2145879722","https://openalex.org/W1998024115","https://openalex.org/W2162201299","https://openalex.org/W2142496094","https://openalex.org/W4220700228"],"abstract_inverted_index":{"Phenotypic":[0],"and":[1,21,43,61,73,146,160],"phylogenetic":[2,145],"studies":[3],"were":[4,75],"performed":[5],"on":[6,144],"three":[7],"strains":[8,34,90],"of":[9,41,102,108,126,177],"an":[10,36],"acetogenic":[11],"bacterium":[12,18],"isolated":[13],"from":[14,69,77],"livestock-impacted":[15],"soil.":[16],"The":[17,32,112,174],"stained":[19],"Gram-negative":[20],"was":[22,27,67,117],"a":[23,92,127,138,157],"non-spore-forming":[24],"rod":[25],"that":[26,87,152],"motile":[28],"by":[29],"peritrichous":[30],"flagella.":[31],"novel":[33,89,128,158],"had":[35],"optimum":[37],"pH":[38],"for":[39,162],"growth":[40,64],"8.0-8.5":[42],"utilized":[44],"H\u2082":[45],":":[46,49,79],"CO\u2082,":[47,50],"CO":[48,78],"glucose,":[51],"fructose,":[52],"mannose,":[53],"turanose,":[54],"ribose,":[55],"trimethylamine,":[56],"pyruvate,":[57],"methanol,":[58],"ethanol,":[59],"n-propanol":[60],"n-butanol":[62],"as":[63],"substrates.":[65],"Acetate":[66],"produced":[68,76],"glucose.":[70],"Acetate,":[71],"CO\u2082":[72],"ethanol":[74],"CO\u2082.":[80],"16S":[81],"rRNA":[82],"gene":[83],"sequence":[84],"analysis":[85,122],"indicated":[86],"the":[88,96,103,109,124,133,153,164,178],"formed":[91],"new":[93,154],"subline":[94],"in":[95],"family":[97],"Eubacteriaceae":[98],"(rRNA":[99],"cluster":[100],"XV)":[101],"low":[104],"G+C-containing":[105],"Gram-positive":[106],"bacteria":[107],"class":[110],"Clostridia.":[111],"DNA":[113],"G+C":[114],"base":[115],"composition":[116],"34":[118],"mol%.":[119],"Cell":[120],"wall":[121],"revealed":[123],"existence":[125],"B-type":[129],"peptidoglycan":[130],"similar":[131],"to":[132],"B2\u03b1-type":[134],"(B4)":[135],"configuration":[136],"with":[137],"variation":[139],"containing":[140],"aspartic":[141],"acid.":[142],"Based":[143],"phenotypic":[147],"evidence,":[148],"it":[149],"is":[150,172,181],"proposed":[151],"isolates":[155],"represent":[156],"genus":[159],"species,":[161],"which":[163],"name":[165],"Alkalibaculum":[166],"bacchi":[167],"gen.":[168],"nov.,":[169],"sp.":[170],"nov.":[171],"proposed.":[173],"type":[175,179],"strain":[176],"species":[180],"CP11(T)":[182],"(=ATCC":[183],"BAA-1772(T)=DSM":[184],"22112(T)).":[185]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":4}],"updated_date":"2026-11-06T12:05:46.655746","created_date":"2016-06-24T00:00:00"}