{"id":"https://openalex.org/W2141989013","doi":"https://doi.org/10.1128/jcm.00618-06","title":"Novel Method To Identify Source-Associated Phylogenetic Clustering Shows thatListeria monocytogenesIncludes Niche-Adapted Clonal Groups with Distinct Ecological Preferences","display_name":"Novel Method To Identify Source-Associated Phylogenetic Clustering Shows thatListeria monocytogenesIncludes Niche-Adapted Clonal Groups with Distinct Ecological Preferences","publication_year":2006,"publication_date":"2006-10-01","ids":{"openalex":"https://openalex.org/W2141989013","doi":"https://doi.org/10.1128/jcm.00618-06","mag":"2141989013","pmid":"https://pubmed.ncbi.nlm.nih.gov/17021104","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/1594779"},"language":"en","primary_location":{"id":"doi:10.1128/jcm.00618-06","doi":"https://doi.org/10.1128/jcm.00618-06","is_oa":false,"landing_page_url":"https://doi.org/10.1128/jcm.00618-06","pdf_url":null,"source":{"id":"https://openalex.org/S53087977","display_name":"Journal of Clinical Microbiology","issn_l":"0095-1137","issn":["0095-1137","1070-633X","1098-660X"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-2","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Microbiology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1594779","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081537609","display_name":"Kendra Kerr Nightingale","orcid":"https://orcid.org/0000-0001-8732-2587","observed_orcids":["https://orcid.org/0000-0001-8732-2587"]},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I92446798","display_name":"Colorado State University","ror":"https://ror.org/03k1gpj17","country_code":"US","type":"education","lineage":["https://openalex.org/I92446798"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"K. K. Nightingale","raw_affiliation_strings":["Department of Animal Sciences, Colorado State University, Fort Collins, Colorado","Department of Food Science, Cornell University, Ithaca, New York"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Sciences, Colorado State University, Fort Collins, Colorado","institution_ids":["https://openalex.org/I92446798"]},{"raw_affiliation_string":"Department of Food Science, Cornell University, Ithaca, New York","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052943759","display_name":"Kristin Van Mouwerik Lyles","orcid":"https://orcid.org/0000-0003-0395-673X","observed_orcids":["https://orcid.org/0000-0003-0395-673X"]},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"K. Lyles","raw_affiliation_strings":["Department of Food Science, Cornell University, Ithaca, New York"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Food Science, Cornell University, Ithaca, New York","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040064042","display_name":"Maranatha O. Ayodele","orcid":"https://orcid.org/0000-0001-5397-2864","observed_orcids":["https://orcid.org/0000-0001-5397-2864"]},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Ayodele","raw_affiliation_strings":["Department of Food Science, Cornell University, Ithaca, New York"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Food Science, Cornell University, Ithaca, New York","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034128905","display_name":"P. Jalan","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"P. Jalan","raw_affiliation_strings":["Department of Biostatistics and Computational Biology, Cornell University, Ithaca, New York"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Computational Biology, Cornell University, Ithaca, New York","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088476239","display_name":"Rasmus Nielsen","orcid":"https://orcid.org/0000-0003-0513-6591","observed_orcids":["https://orcid.org/0000-0003-0513-6591"]},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"R. Nielsen","raw_affiliation_strings":["Center for Bioinformatics and Institute of Biology, University of Copenhagen, Copenhagen, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Institute of Biology, University of Copenhagen, Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082217142","display_name":"Martin Wiedmann","orcid":"https://orcid.org/0000-0002-4168-5662","observed_orcids":["https://orcid.org/0000-0002-4168-5662"]},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Wiedmann","raw_affiliation_strings":["Department of Food Science, Cornell University, Ithaca, New York"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Food Science, Cornell University, Ithaca, New York","institution_ids":["https://openalex.org/I205783295"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5081537609"],"corresponding_institution_ids":["https://openalex.org/I205783295","https://openalex.org/I92446798"],"apc_list":null,"apc_paid":null,"fwci":3.6709,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.91638303,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":95},"biblio":{"volume":"44","issue":"10","first_page":"3742","last_page":"3751"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10900","display_name":"Listeria monocytogenes in Food Safety","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10900","display_name":"Listeria monocytogenes in Food Safety","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.000699999975040555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10486","display_name":"Salmonella and Campylobacter epidemiology","score":0.0006000000284984708,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/listeria-monocytogenes","display_name":"Listeria monocytogenes","score":1.0},{"id":"https://openalex.org/keywords/phylogenetic-clades","display_name":"phylogenetic clades","score":0.824999988079071},{"id":"https://openalex.org/keywords/niche-adaptation","display_name":"niche adaptation","score":0.7039999961853027},{"id":"https://openalex.org/keywords/acta","display_name":"ACTA","score":0.8759999871253967},{"id":"https://openalex.org/keywords/integrated-nested-laplace-approximation","display_name":"integrated nested Laplace approximation","score":0.9990000128746033},{"id":"https://openalex.org/keywords/virulence-phenotypes","display_name":"virulence phenotypes","score":0.7670000195503235},{"id":"https://openalex.org/keywords/bacterial-epidemiology","display_name":"bacterial epidemiology","score":0.46299999952316284},{"id":"https://openalex.org/keywords/clonal-clusters","display_name":"clonal groups","score":0.37299999594688416}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8840304613113403},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.8549034595489502},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.8214819431304932},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.6123850345611572},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5405892133712769},{"id":"https://openalex.org/C153991713","wikidata":"https://www.wikidata.org/wiki/Q17142856","display_name":"Niche","level":2,"score":0.5193573236465454},{"id":"https://openalex.org/C2781350384","wikidata":"https://www.wikidata.org/wiki/Q292015","display_name":"Listeria monocytogenes","level":3,"score":0.4946875274181366},{"id":"https://openalex.org/C102715595","wikidata":"https://www.wikidata.org/wiki/Q172861","display_name":"Ecological niche","level":3,"score":0.48378607630729675},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4617161452770233},{"id":"https://openalex.org/C19033989","wikidata":"https://www.wikidata.org/wiki/Q6752022","display_name":"Mantel test","level":4,"score":0.4319777488708496},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.42232245206832886},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.2521541714668274},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22640159726142883},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.19798845052719116},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.10906541347503662},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C185933670","wikidata":"https://www.wikidata.org/wiki/Q52105","display_name":"Habitat","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005516","descriptor_name":"Food Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008089","descriptor_name":"Listeria monocytogenes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1128/jcm.00618-06","doi":"https://doi.org/10.1128/jcm.00618-06","is_oa":false,"landing_page_url":"https://doi.org/10.1128/jcm.00618-06","pdf_url":null,"source":{"id":"https://openalex.org/S53087977","display_name":"Journal of Clinical Microbiology","issn_l":"0095-1137","issn":["0095-1137","1070-633X","1098-660X"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-2","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Microbiology","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:1341394","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1594779","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1594779","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1594779","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"J Clin Microbiol","raw_type":"Text"},{"id":"pmid:17021104","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17021104","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of clinical microbiology","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.817.9946","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.817.9946","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://cteg.berkeley.edu/%7Enielsen/wordpress/wp-content/uploads/2011/06/Nightingale.Clin_.Microbiol.2006.pdf","raw_type":"text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/22175db0-6c37-11dc-bee9-02004c4f4f50","doi":null,"is_oa":false,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/22175db0-6c37-11dc-bee9-02004c4f4f50","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nightingale, K K, Lyles, K, Ayodele, M, Jalan, P, Nielsen, R & Wiedmann, M 2006, 'Novel Method To Identify Source-Associated Phylogenetic Clustering Shows that Listeria monocytogenes Includes Niche-Adapted Clonal Groups with Distinct Ecological Preferences', Journal of Clinical Microbiology, vol. 44, no. 10, pp. 3742-3751. https://doi.org/10.1128/JCM.00618-06","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:europepmc.org:1341394","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1594779","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},"sustainable_development_goals":[{"score":0.5683000087738037,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G4722580630","display_name":"L. MONOCYTOGENES CLONAL GROUPS: ECOLOGY AND TRANSMISSION","funder_award_id":"R01GM063259","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320324004","display_name":"Forskningsr\u00e5det om H\u00e4lsa, Arbetsliv och V\u00e4lf\u00e4rd","ror":"https://ror.org/02d290r06"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W16720370","https://openalex.org/W1272784366","https://openalex.org/W1784096314","https://openalex.org/W1850330698","https://openalex.org/W1899458988","https://openalex.org/W1964368171","https://openalex.org/W1969612992","https://openalex.org/W1986018808","https://openalex.org/W1994175686","https://openalex.org/W1996489389","https://openalex.org/W2007641004","https://openalex.org/W2021525641","https://openalex.org/W2037419442","https://openalex.org/W2046942332","https://openalex.org/W2082928585","https://openalex.org/W2083587510","https://openalex.org/W2087908626","https://openalex.org/W2101793321","https://openalex.org/W2109018223","https://openalex.org/W2109448478","https://openalex.org/W2119529835","https://openalex.org/W2125614837","https://openalex.org/W2128569759","https://openalex.org/W2143492092","https://openalex.org/W2158484417","https://openalex.org/W2159850292","https://openalex.org/W2161966014","https://openalex.org/W2162243177","https://openalex.org/W2166422451","https://openalex.org/W2236777032","https://openalex.org/W2259742533","https://openalex.org/W4212861730","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W7203611610","https://openalex.org/W2161966014","https://openalex.org/W2153324002","https://openalex.org/W2801886331","https://openalex.org/W4402241319","https://openalex.org/W3127422276","https://openalex.org/W2209825760","https://openalex.org/W2979143665","https://openalex.org/W4390654078","https://openalex.org/W2189253720"],"abstract_inverted_index":{"While":[0],"phylogenetic":[1,75,117,233],"and":[2,43,47,65,88,101,159,164,196,200,225,235],"cluster":[3],"analyses":[4],"are":[5,21,78,105,129,214],"often":[6],"used":[7,34],"to":[8,63,71,245],"define":[9],"clonal":[10,18,210,240],"groups":[11,19,211,241],"within":[12,100],"bacterial":[13],"species,":[14],"the":[15,72,91,95,116,149,154,172,205,208,223],"identification":[16,73],"of":[17,55,74,122,134,144],"that":[20,77,94,207,221,242],"associated":[22,80],"with":[23,81,119,178,190],"specific":[24,247],"ecological":[25],"niches":[26],"or":[27,183,250],"host":[28,248],"species":[29,46,249],"remains":[30],"a":[31,53,60,67,125],"challenge.":[32],"We":[33],"Listeria":[35],"monocytogenes,":[36],"which":[37,48],"causes":[38],"invasive":[39],"disease":[40],"in":[41,115],"humans":[42],"different":[44,82],"animal":[45],"can":[49,107,228],"be":[50,108],"isolated":[51],"from":[52,124,148,157],"number":[54],"environments":[56],"including":[57,85,193],"food,":[58],"as":[59],"model":[61],"organism":[62],"develop":[64],"implement":[66],"two-step":[68],"statistical":[69],"approach":[70],"clades":[76,114,177],"significantly":[79],"source":[83,103,127],"populations,":[84],"humans,":[86],"animals,":[87],"food.":[89],"If":[90],"null":[92],"hypothesis":[93],"genetic":[96],"distances":[97],"for":[98,137],"isolates":[99,141,147],"between":[102,146],"populations":[104],"identical":[106],"rejected":[109],"(SourceCluster":[110],"test),":[111],"then":[112],"particular":[113],"tree":[118],"significant":[120,179,185],"overrepresentation":[121],"sequences":[123],"given":[126],"population":[128],"identified":[130,175,212],"(TreeStats":[131],"test).":[132,170],"Analysis":[133],"sequence":[135],"data":[136,203,219],"120":[138],"L.":[139,237],"monocytogenes":[140,238],"revealed":[142],"evidence":[143],"clustering":[145],"same":[150],"source,":[151],"based":[152],"on":[153],"phylogenies":[155],"inferred":[156],"actA":[158],"inlA":[160],"(P":[161,180,186],"=":[162,166],"0.02":[163],"P":[165],"0.07,":[167],"respectively;":[168],"SourceCluster":[169,224],"Overall,":[171,217],"TreeStats":[173,226],"test":[174],"10":[176],"<":[181,187],"0.05)":[182],"marginally":[184],"0.10)":[188],"associations":[189],"defined":[191],"sources,":[192],"human-,":[194],"animal-,":[195],"food-associated":[197],"clusters.":[198],"Epidemiological":[199],"virulence":[201],"phenotype":[202],"supported":[204],"fact":[206],"source-associated":[209,232],"here":[213],"biologically":[215,230],"valid.":[216],"our":[218],"show":[220],"(i)":[222],"tests":[227],"identify":[229],"meaningful":[231],"clusters":[234],"(ii)":[236],"includes":[239],"have":[243],"adapted":[244],"infect":[246],"colonize":[251],"nonhost":[252],"environments.":[253]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}
