{"id":"https://openalex.org/W2140878613","doi":"https://doi.org/10.1104/pp.107.115535","title":"CressExpress: A Tool For Large-Scale Mining of Expression Data from Arabidopsis","display_name":"CressExpress: A Tool For Large-Scale Mining of Expression Data from Arabidopsis","publication_year":2008,"publication_date":"2008-05-08","ids":{"openalex":"https://openalex.org/W2140878613","doi":"https://doi.org/10.1104/pp.107.115535","mag":"2140878613","pmid":"https://pubmed.ncbi.nlm.nih.gov/18467456","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/2442548"},"language":"en","primary_location":{"id":"doi:10.1104/pp.107.115535","doi":"https://doi.org/10.1104/pp.107.115535","is_oa":true,"landing_page_url":"https://doi.org/10.1104/pp.107.115535","pdf_url":"https://academic.oup.com/plphys/article-pdf/147/3/1004/37092850/plphys_v147_3_1004.pdf","source":{"id":"https://openalex.org/S42294715","display_name":"PLANT PHYSIOLOGY","issn_l":"0032-0889","issn":["0032-0889","1532-2548"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","jufo-3","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Physiology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/plphys/article-pdf/147/3/1004/37092850/plphys_v147_3_1004.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033626493","display_name":"Vinodh Srinivasasainagendra","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I102149020","display_name":"University of North Carolina at Charlotte","ror":"https://ror.org/04dawnj30","country_code":"US","type":"education","lineage":["https://openalex.org/I102149020"]},{"id":"https://openalex.org/I17301866","display_name":"University of Alabama","ror":"https://ror.org/03xrrjk67","country_code":"US","type":"education","lineage":["https://openalex.org/I17301866"]},{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vinodh Srinivasasainagendra","raw_affiliation_strings":["Section on Statistical Genetics, Department of Biostatistics, University of Alabama, Birmingham, Alabama 35294 (V.S., G.P.P., T.M, I.C.); and University of North Carolina at Charlotte, Bioinformatics Research Center, North Carolina Research Campus, Kannapolis, North Carolina 28081 (A.E.L.)","University of North Carolina at Charlotte, Bioinformatics Research Center, North Carolina Research Campus, Kannapolis, North Carolina 28081 (A.E.L.)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Section on Statistical Genetics, Department of Biostatistics, University of Alabama, Birmingham, Alabama 35294 (V.S., G.P.P., T.M, I.C.); and University of North Carolina at Charlotte, Bioinformatics Research Center, North Carolina Research Campus, Kannapolis, North Carolina 28081 (A.E.L.)","institution_ids":["https://openalex.org/I102149020","https://openalex.org/I17301866","https://openalex.org/I32389192"]},{"raw_affiliation_string":"University of North Carolina at Charlotte, Bioinformatics Research Center, North Carolina Research Campus, Kannapolis, North Carolina 28081 (A.E.L.)","institution_ids":["https://openalex.org/I102149020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039501195","display_name":"Grier P. Page","orcid":"https://orcid.org/0000-0003-2582-3786","observed_orcids":["https://orcid.org/0000-0003-2582-3786"]},"institutions":[{"id":"https://openalex.org/I102149020","display_name":"University of North Carolina at Charlotte","ror":"https://ror.org/04dawnj30","country_code":"US","type":"education","lineage":["https://openalex.org/I102149020"]},{"id":"https://openalex.org/I17301866","display_name":"University of Alabama","ror":"https://ror.org/03xrrjk67","country_code":"US","type":"education","lineage":["https://openalex.org/I17301866"]},{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Grier P. Page","raw_affiliation_strings":["Section on Statistical Genetics, Department of Biostatistics, University of Alabama, Birmingham, Alabama 35294 (V.S., G.P.P., T.M, I.C.); and University of North Carolina at Charlotte, Bioinformatics Research Center, North Carolina Research Campus, Kannapolis, North Carolina 28081 (A.E.L.)","University of North Carolina at Charlotte, Bioinformatics Research Center, North Carolina Research Campus, Kannapolis, North Carolina 28081 (A.E.L.)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Section on Statistical Genetics, Department of Biostatistics, University of Alabama, Birmingham, Alabama 35294 (V.S., G.P.P., T.M, I.C.); and University of North Carolina at Charlotte, Bioinformatics Research Center, North Carolina Research Campus, Kannapolis, North Carolina 28081 (A.E.L.)","institution_ids":["https://openalex.org/I102149020","https://openalex.org/I17301866","https://openalex.org/I32389192"]},{"raw_affiliation_string":"University of North Carolina at Charlotte, Bioinformatics Research Center, North Carolina Research Campus, Kannapolis, North Carolina 28081 (A.E.L.)","institution_ids":["https://openalex.org/I102149020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011548900","display_name":"Tapan S. Mehta","orcid":"https://orcid.org/0000-0002-2016-2344","observed_orcids":["https://orcid.org/0000-0002-2016-2344"]},"institutions":[{"id":"https://openalex.org/I102149020","display_name":"University of North Carolina at Charlotte","ror":"https://ror.org/04dawnj30","country_code":"US","type":"education","lineage":["https://openalex.org/I102149020"]},{"id":"https://openalex.org/I17301866","display_name":"University of Alabama","ror":"https://ror.org/03xrrjk67","country_code":"US","type":"education","lineage":["https://openalex.org/I17301866"]},{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tapan Mehta","raw_affiliation_strings":["Section on Statistical Genetics, Department of Biostatistics, University of Alabama, Birmingham, Alabama 35294 (V.S., G.P.P., T.M, I.C.); and University of North Carolina at Charlotte, Bioinformatics Research Center, North Carolina Research Campus, Kannapolis, North Carolina 28081 (A.E.L.)","University of North Carolina at Charlotte, Bioinformatics Research Center, North Carolina Research Campus, Kannapolis, North Carolina 28081 (A.E.L.)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Section on Statistical Genetics, Department of Biostatistics, University of Alabama, Birmingham, Alabama 35294 (V.S., G.P.P., T.M, I.C.); and University of North Carolina at Charlotte, Bioinformatics Research Center, North Carolina Research Campus, Kannapolis, North Carolina 28081 (A.E.L.)","institution_ids":["https://openalex.org/I102149020","https://openalex.org/I17301866","https://openalex.org/I32389192"]},{"raw_affiliation_string":"University of North Carolina at Charlotte, Bioinformatics Research Center, North Carolina Research Campus, Kannapolis, North Carolina 28081 (A.E.L.)","institution_ids":["https://openalex.org/I102149020"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Issa Coulibaly","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I102149020","display_name":"University of North Carolina at Charlotte","ror":"https://ror.org/04dawnj30","country_code":"US","type":"education","lineage":["https://openalex.org/I102149020"]},{"id":"https://openalex.org/I17301866","display_name":"University of Alabama","ror":"https://ror.org/03xrrjk67","country_code":"US","type":"education","lineage":["https://openalex.org/I17301866"]},{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Issa Coulibaly","raw_affiliation_strings":["Section on Statistical Genetics, Department of Biostatistics, University of Alabama, Birmingham, Alabama 35294 (V.S., G.P.P., T.M, I.C.); and University of North Carolina at Charlotte, Bioinformatics Research Center, North Carolina Research Campus, Kannapolis, North Carolina 28081 (A.E.L.)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Section on Statistical Genetics, Department of Biostatistics, University of Alabama, Birmingham, Alabama 35294 (V.S., G.P.P., T.M, I.C.); and University of North Carolina at Charlotte, Bioinformatics Research Center, North Carolina Research Campus, Kannapolis, North Carolina 28081 (A.E.L.)","institution_ids":["https://openalex.org/I102149020","https://openalex.org/I17301866","https://openalex.org/I32389192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074503956","display_name":"Ann E. Loraine","orcid":"https://orcid.org/0000-0002-8365-0177","observed_orcids":["https://orcid.org/0000-0002-8365-0177"]},"institutions":[{"id":"https://openalex.org/I102149020","display_name":"University of North Carolina at Charlotte","ror":"https://ror.org/04dawnj30","country_code":"US","type":"education","lineage":["https://openalex.org/I102149020"]},{"id":"https://openalex.org/I17301866","display_name":"University of Alabama","ror":"https://ror.org/03xrrjk67","country_code":"US","type":"education","lineage":["https://openalex.org/I17301866"]},{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ann E. Loraine","raw_affiliation_strings":["Section on Statistical Genetics, Department of Biostatistics, University of Alabama, Birmingham, Alabama 35294 (V.S., G.P.P., T.M, I.C.); and University of North Carolina at Charlotte, Bioinformatics Research Center, North Carolina Research Campus, Kannapolis, North Carolina 28081 (A.E.L.)","University of North Carolina at Charlotte, Bioinformatics Research Center, North Carolina Research Campus, Kannapolis, North Carolina 28081 (A.E.L.)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Section on Statistical Genetics, Department of Biostatistics, University of Alabama, Birmingham, Alabama 35294 (V.S., G.P.P., T.M, I.C.); and University of North Carolina at Charlotte, Bioinformatics Research Center, North Carolina Research Campus, Kannapolis, North Carolina 28081 (A.E.L.)","institution_ids":["https://openalex.org/I102149020","https://openalex.org/I17301866","https://openalex.org/I32389192"]},{"raw_affiliation_string":"University of North Carolina at Charlotte, Bioinformatics Research Center, North Carolina Research Campus, Kannapolis, North Carolina 28081 (A.E.L.)","institution_ids":["https://openalex.org/I102149020"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5074503956"],"corresponding_institution_ids":["https://openalex.org/I102149020","https://openalex.org/I17301866","https://openalex.org/I32389192"],"apc_list":{"value":3851,"currency":"USD","value_usd":3851},"apc_paid":{"value":3851,"currency":"USD","value_usd":3851},"fwci":5.936,"has_fulltext":true,"cited_by_count":121,"citation_normalized_percentile":{"value":0.97686205,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":100},"biblio":{"volume":"147","issue":"3","first_page":"1004","last_page":"1016"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8403000235557556,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8403000235557556,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.09040000289678574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.04270000010728836,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.9860000014305115},{"id":"https://openalex.org/keywords/gene-expression-microarrays","display_name":"gene expression microarrays","score":0.8610000014305115},{"id":"https://openalex.org/keywords/web-based-bioinformatics-tool","display_name":"web-based bioinformatics tool","score":0.7549999952316284},{"id":"https://openalex.org/keywords/gene-expression-data-mining","display_name":"gene expression data mining","score":0.6179999709129333},{"id":"https://openalex.org/keywords/cellulose-synthase-genes","display_name":"cellulose synthase genes","score":0.9150000214576721},{"id":"https://openalex.org/keywords/flowering-genes","display_name":"flowering genes","score":0.6859999895095825}],"concepts":[{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.7602051496505737},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5949645042419434},{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.561592161655426},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5165823698043823},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.49259263277053833},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48470473289489746},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.48325735330581665},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.44064438343048096},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.42300593852996826},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4191972017288208},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4143051505088806},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3122203052043915},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.30884289741516113},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.260039746761322},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002473","descriptor_name":"Cell Wall","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005961","descriptor_name":"Glucosinolates","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005964","descriptor_name":"Glucosyltransferases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014364","descriptor_name":"Tryptophan","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1104/pp.107.115535","doi":"https://doi.org/10.1104/pp.107.115535","is_oa":true,"landing_page_url":"https://doi.org/10.1104/pp.107.115535","pdf_url":"https://academic.oup.com/plphys/article-pdf/147/3/1004/37092850/plphys_v147_3_1004.pdf","source":{"id":"https://openalex.org/S42294715","display_name":"PLANT PHYSIOLOGY","issn_l":"0032-0889","issn":["0032-0889","1532-2548"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","jufo-3","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Physiology","raw_type":"journal-article"},{"id":"pmid:18467456","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18467456","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant physiology","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2442548","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC2442548/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Physiol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1104/pp.107.115535","doi":"https://doi.org/10.1104/pp.107.115535","is_oa":true,"landing_page_url":"https://doi.org/10.1104/pp.107.115535","pdf_url":"https://academic.oup.com/plphys/article-pdf/147/3/1004/37092850/plphys_v147_3_1004.pdf","source":{"id":"https://openalex.org/S42294715","display_name":"PLANT PHYSIOLOGY","issn_l":"0032-0889","issn":["0032-0889","1532-2548"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","jufo-3","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Physiology","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G2433664765","display_name":null,"funder_award_id":"0501890","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4790609548","display_name":"Center for Nutrient-Gene Interaction in Cancer Prevention","funder_award_id":"U54CA100949","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G5590327009","display_name":"Design & Analysis of Microarray Gene Expression Studies in Plants: Toward Sound Statistical Procedures","funder_award_id":"0217651","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G57586662","display_name":"Functional Genomics of Woody Perennial Flowering","funder_award_id":"0501890","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320312852","display_name":"University of Alabama","ror":"https://ror.org/03xrrjk67"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2140878613.pdf","grobid_xml":"https://content.openalex.org/works/W2140878613.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1791357022","https://openalex.org/W1965258494","https://openalex.org/W1979214731","https://openalex.org/W1982072860","https://openalex.org/W1982335518","https://openalex.org/W1982891551","https://openalex.org/W1999498230","https://openalex.org/W2005273845","https://openalex.org/W2014978570","https://openalex.org/W2015669660","https://openalex.org/W2017073911","https://openalex.org/W2049833617","https://openalex.org/W2052167976","https://openalex.org/W2065716803","https://openalex.org/W2074403192","https://openalex.org/W2081730254","https://openalex.org/W2081930664","https://openalex.org/W2096451658","https://openalex.org/W2097311303","https://openalex.org/W2099299146","https://openalex.org/W2102451074","https://openalex.org/W2103395443","https://openalex.org/W2103864083","https://openalex.org/W2110495586","https://openalex.org/W2112928083","https://openalex.org/W2115111790","https://openalex.org/W2115476315","https://openalex.org/W2116634113","https://openalex.org/W2117790023","https://openalex.org/W2122049094","https://openalex.org/W2125776280","https://openalex.org/W2128667600","https://openalex.org/W2134907565","https://openalex.org/W2159675211","https://openalex.org/W2161920970","https://openalex.org/W2162142896","https://openalex.org/W2163921837","https://openalex.org/W2169104458","https://openalex.org/W2170989872","https://openalex.org/W2171405769","https://openalex.org/W2313479333"],"related_works":["https://openalex.org/W69652963","https://openalex.org/W2146872370","https://openalex.org/W2014978570","https://openalex.org/W4214755239","https://openalex.org/W1979153484","https://openalex.org/W2098830771","https://openalex.org/W2060724738","https://openalex.org/W2115111790","https://openalex.org/W2272649288","https://openalex.org/W2135714434"],"abstract_inverted_index":{"CressExpress":[0,38,56,132,139,190],"is":[1,227],"a":[2,119,180],"user-friendly,":[3],"online,":[4],"coexpression":[5,36,43,60,162,223],"analysis":[6,61],"tool":[7,122,226],"for":[8,89,158,183],"Arabidopsis":[9],"(Arabidopsis":[10],"thaliana)":[11],"microarray":[12],"expression":[13,20,145,195],"data":[14,50,146],"that":[15,175],"computes":[16],"patterns":[17],"of":[18,28,41,48,65,86,115,121,164],"correlated":[19],"between":[21],"user-entered":[22],"query":[23,66,81,99,210],"genes":[24,30,71,184,211],"and":[25,69,94,109,124,143,150,171,217],"the":[26,29,32,98,112,131],"rest":[27],"in":[31,91,138,186,188],"genome.":[33],"Unlike":[34],"other":[35,216],"tools,":[37],"allows":[39,84],"characterization":[40],"tissue-specific":[42],"networks":[44],"through":[45],"user-driven":[46],"filtering":[47],"input":[49],"based":[51,72],"on":[52,62,73],"sample":[53,177],"tissue":[54],"type.":[55],"also":[57],"performs":[58],"pathway-level":[59,222],"each":[63,215],"set":[64],"genes,":[67,167],"identifying":[68],"ranking":[70],"their":[74,209],"common":[75,92],"connections":[76],"with":[77,118,214],"two":[78],"or":[79],"more":[80],"genes.":[82],"This":[83],"identification":[85],"novel":[87],"candidates":[88],"involvement":[90],"processes":[93],"functions":[95],"represented":[96],"by":[97],"group.":[100],"Users":[101],"launch":[102],"experiments":[103],"using":[104],"an":[105,127,198],"easy-to-use":[106,199],"Web-based":[107],"interface":[108],"then":[110],"receive":[111],"full":[113],"complement":[114],"results,":[116],"along":[117],"record":[120],"settings":[123],"parameters,":[125],"via":[126,197],"e-mail":[128],"link":[129],"to":[130,194,205,219],"Web":[133,201],"site.":[134],"Data":[135],"sets":[136],"featured":[137],"are":[140,212],"strictly":[141],"versioned":[142],"include":[144],"from":[147],"MAS5,":[148],"GCRMA,":[149],"RMA":[151],"array":[152],"processing":[153],"algorithms.":[154],"To":[155],"demonstrate":[156],"applications":[157],"CressExpress,":[159],"we":[160],"present":[161],"analyses":[163],"cellulose":[165],"synthase":[166],"indolic":[168],"glucosinolate":[169],"biosynthesis,":[170],"flowering.":[172],"We":[173],"show":[174],"subselecting":[176],"types":[178],"produces":[179],"richer":[181],"network":[182],"involved":[185],"flowering":[187],"Arabidopsis.":[189],"provides":[191],"direct":[192],"access":[193],"values":[196],"URL-based":[200],"service,":[202],"allowing":[203],"users":[204],"determine":[206],"quickly":[207],"if":[208],"coexpressed":[213],"likely":[218],"yield":[220],"informative":[221],"results.":[224],"The":[225],"available":[228],"at":[229],"http://www.cressexpress.org.":[230]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":9},{"year":2012,"cited_by_count":17}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2016-06-24T00:00:00"}