{"id":"https://openalex.org/W2139351486","doi":"https://doi.org/10.1093/nass/1.1.245","title":"Statistical analysis of functional regions in Ti and Ri sequenced plasmids in Agrobacterium","display_name":"Statistical analysis of functional regions in Ti and Ri sequenced plasmids in Agrobacterium","publication_year":2001,"publication_date":"2001-11-01","ids":{"openalex":"https://openalex.org/W2139351486","doi":"https://doi.org/10.1093/nass/1.1.245","mag":"2139351486","pmid":"https://pubmed.ncbi.nlm.nih.gov/12836356"},"language":"en","primary_location":{"id":"doi:10.1093/nass/1.1.245","doi":"https://doi.org/10.1093/nass/1.1.245","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nass/1.1.245","pdf_url":"https://academic.oup.com/nass/article-pdf/1/1/245/6188940/11245.pdf","source":{"id":"https://openalex.org/S193378857","display_name":"Nucleic Acids Symposium Series","issn_l":"0261-3166","issn":["0261-3166","1746-8272"],"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Symposium Series","raw_type":"journal-article"},"volume":null,"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nass/article-pdf/1/1/245/6188940/11245.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041771802","display_name":"Kazuo Yoshida","orcid":"https://orcid.org/0000-0001-5504-1684","observed_orcids":["https://orcid.org/0000-0001-5504-1684"]},"institutions":[{"id":"https://openalex.org/I113306721","display_name":"Hiroshima University","ror":"https://ror.org/03t78wx29","country_code":"JP","type":"education","lineage":["https://openalex.org/I113306721"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"K. Yoshida","raw_affiliation_strings":["Department of Biological Science, Graduate School of Science, Hiroshima University, Higashi-Hiroshima 739-8526, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Science, Graduate School of Science, Hiroshima University, Higashi-Hiroshima 739-8526, Japan","institution_ids":["https://openalex.org/I113306721"]}]},{"author_position":"middle","author":{"id":null,"display_name":"K. Futagami","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210129690","display_name":"Department of Biological Sciences","ror":"https://ror.org/038rjvd86","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210129690"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"K. Futagami","raw_affiliation_strings":["Department of Biological Science ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Science ,","institution_ids":["https://openalex.org/I4210129690"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110022973","display_name":"Y. Fujikoshi","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I113306721","display_name":"Hiroshima University","ror":"https://ror.org/03t78wx29","country_code":"JP","type":"education","lineage":["https://openalex.org/I113306721"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Y. Fujikoshi","raw_affiliation_strings":["Mathematics, Graduate School of Science and faculty of Economics , Hiroshima University , Higashi-Hiroshima 739-8526 , Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mathematics, Graduate School of Science and faculty of Economics , Hiroshima University , Higashi-Hiroshima 739-8526 , Japan","institution_ids":["https://openalex.org/I113306721"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.18206209,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"1","issue":"1","first_page":"245","last_page":"246"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.21140000224113464,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.21140000224113464,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.16419999301433563,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.13220000267028809,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/agrobacterium","display_name":"Agrobacterium","score":0.8289999961853027},{"id":"https://openalex.org/keywords/ti-plasmid","display_name":"Ti plasmid","score":0.9950000047683716},{"id":"https://openalex.org/keywords/ri-plasmid","display_name":"Ri plasmid","score":0.9990000128746033},{"id":"https://openalex.org/keywords/codon-usage","display_name":"codon usage","score":0.7929999828338623},{"id":"https://openalex.org/keywords/correspondence-analysis","display_name":"correspondence analysis","score":0.628000020980835}],"concepts":[{"id":"https://openalex.org/C22744801","wikidata":"https://www.wikidata.org/wiki/Q172778","display_name":"Plasmid","level":3,"score":0.7526352405548096},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6417094469070435},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.528565526008606},{"id":"https://openalex.org/C55112680","wikidata":"https://www.wikidata.org/wiki/Q190549","display_name":"Functional analysis","level":3,"score":0.5283200144767761},{"id":"https://openalex.org/C2986587452","wikidata":"https://www.wikidata.org/wiki/Q938438","display_name":"Statistical analysis","level":2,"score":0.513184130191803},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5099111795425415},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46587440371513367},{"id":"https://openalex.org/C148298330","wikidata":"https://www.wikidata.org/wiki/Q1784754","display_name":"Correspondence analysis","level":2,"score":0.4344118535518646},{"id":"https://openalex.org/C87253356","wikidata":"https://www.wikidata.org/wiki/Q1106472","display_name":"Codon usage bias","level":4,"score":0.43222346901893616},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.3416425585746765},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2799223065376282},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21930551528930664},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19196799397468567},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.1766543984413147},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.15073102712631226},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.09547621011734009},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010957","descriptor_name":"Plasmids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012231","descriptor_name":"Rhizobium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016009","descriptor_name":"Chi-Square Distribution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D036741","descriptor_name":"Plant Tumor-Inducing Plasmids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D037521","descriptor_name":"Virulence Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nass/1.1.245","doi":"https://doi.org/10.1093/nass/1.1.245","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nass/1.1.245","pdf_url":"https://academic.oup.com/nass/article-pdf/1/1/245/6188940/11245.pdf","source":{"id":"https://openalex.org/S193378857","display_name":"Nucleic Acids Symposium Series","issn_l":"0261-3166","issn":["0261-3166","1746-8272"],"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Symposium Series","raw_type":"journal-article"},{"id":"pmid:12836356","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12836356","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research. Supplement (2001)","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.519.3571","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.519.3571","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nass.oxfordjournals.org/content/1/1/245.full.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/nass/1.1.245","doi":"https://doi.org/10.1093/nass/1.1.245","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nass/1.1.245","pdf_url":"https://academic.oup.com/nass/article-pdf/1/1/245/6188940/11245.pdf","source":{"id":"https://openalex.org/S193378857","display_name":"Nucleic Acids Symposium Series","issn_l":"0261-3166","issn":["0261-3166","1746-8272"],"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Symposium Series","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2139351486.pdf","grobid_xml":"https://content.openalex.org/works/W2139351486.grobid-xml"},"referenced_works_count":1,"referenced_works":["https://openalex.org/W2052696562"],"related_works":["https://openalex.org/W1549875078","https://openalex.org/W1979602933","https://openalex.org/W2079429682","https://openalex.org/W7096448598","https://openalex.org/W2503082614","https://openalex.org/W2410632686","https://openalex.org/W2581499201","https://openalex.org/W2163097179","https://openalex.org/W2411222220","https://openalex.org/W2613150194"],"abstract_inverted_index":{"The":[0],"purpose":[1],"of":[2,10,16,33,42],"this":[3],"paper":[4],"is":[5,27,36],"to":[6],"examine":[7],"functional":[8,34],"regions":[9,35],"the":[11],"completely":[12],"sequenced":[13],"DNA":[14],"data":[15],"Ti":[17],"and":[18,46],"Ri":[19],"plasmids,":[20],"based":[21],"on":[22],"codon":[23,43],"usage":[24,44],"similarity.":[25],"It":[26],"shown":[28],"that":[29],"a":[30],"successful":[31],"classification":[32],"obtained":[37],"by":[38],"using":[39],"statistical":[40],"measures":[41],"dissimilarity":[45],"correspondence":[47],"analysis.":[48]},"counts_by_year":[],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2016-06-24T00:00:00"}