{"id":"https://openalex.org/W2139297998","doi":"https://doi.org/10.1186/1479-7364-2-4-266","title":"Comparison of human (and other) genome browsers","display_name":"Comparison of human (and other) genome browsers","publication_year":2006,"publication_date":"2006-01-01","ids":{"openalex":"https://openalex.org/W2139297998","doi":"https://doi.org/10.1186/1479-7364-2-4-266","mag":"2139297998","pmid":"https://pubmed.ncbi.nlm.nih.gov/16460652","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/3525149"},"language":"en","primary_location":{"id":"doi:10.1186/1479-7364-2-4-266","doi":"https://doi.org/10.1186/1479-7364-2-4-266","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1479-7364-2-4-266","pdf_url":"https://humgenomics.biomedcentral.com/counter/pdf/10.1186/1479-7364-2-4-266","source":{"id":"https://openalex.org/S2738571386","display_name":"Human Genomics","issn_l":"1473-9542","issn":["1473-9542","1479-7364"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-d","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Human Genomics","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://humgenomics.biomedcentral.com/counter/pdf/10.1186/1479-7364-2-4-266","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039434220","display_name":"Terrence S. Furey","orcid":"https://orcid.org/0000-0001-5546-9672","observed_orcids":["https://orcid.org/0000-0001-5546-9672"]},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Terrence S Furey","raw_affiliation_strings":["Institute for Genome Sciences and Policy, Duke University, Box 3382, Durham, NC 27708, USA. terry.furey@duke.edu","Institute for Genome Sciences and Policy, Duke University, Durham, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genome Sciences and Policy, Duke University, Box 3382, Durham, NC 27708, USA. terry.furey@duke.edu","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Institute for Genome Sciences and Policy, Duke University, Durham, USA","institution_ids":["https://openalex.org/I170897317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5039434220"],"corresponding_institution_ids":["https://openalex.org/I170897317"],"apc_list":{"value":3290,"currency":"USD","value_usd":3290},"apc_paid":{"value":3290,"currency":"USD","value_usd":3290},"fwci":1.4597,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.7933226,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":87,"max":96},"biblio":{"volume":"2","issue":"4","first_page":"266","last_page":"266"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.913100004196167,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.913100004196167,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.04800000041723251,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.016300000250339508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome-browser","display_name":"genome browser","score":0.9980000257492065},{"id":"https://openalex.org/keywords/ucsc-genome-browser","display_name":"UCSC Genome Browser","score":0.9079999923706055},{"id":"https://openalex.org/keywords/genome-annotation","display_name":"genome annotation","score":0.6980000138282776},{"id":"https://openalex.org/keywords/sequence-database-searching","display_name":"sequence database searching","score":0.4790000021457672},{"id":"https://openalex.org/keywords/genomic-data-visualization","display_name":"genome visualization","score":0.5529999732971191}],"concepts":[{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.9592565298080444},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.9245940446853638},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.8182916641235352},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.5760149955749512},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5433588027954102},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5315746068954468},{"id":"https://openalex.org/C64015301","wikidata":"https://www.wikidata.org/wiki/Q5533480","display_name":"Genome Biology","level":5,"score":0.5054419040679932},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4872099757194519},{"id":"https://openalex.org/C47042493","wikidata":"https://www.wikidata.org/wiki/Q265799","display_name":"Human genetics","level":3,"score":0.4812438488006592},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.378246009349823},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.33528581261634827},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3115256428718567},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2686179280281067}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1479-7364-2-4-266","doi":"https://doi.org/10.1186/1479-7364-2-4-266","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1479-7364-2-4-266","pdf_url":"https://humgenomics.biomedcentral.com/counter/pdf/10.1186/1479-7364-2-4-266","source":{"id":"https://openalex.org/S2738571386","display_name":"Human Genomics","issn_l":"1473-9542","issn":["1473-9542","1479-7364"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-d","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Human Genomics","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2524006","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3525149","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3525149","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3525149","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Hum Genomics","raw_type":"Text"},{"id":"pmid:16460652","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16460652","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Human genomics","raw_type":"Comparative Study"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.789.4682","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.789.4682","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/46/5c/1479-7364-2-4-266.PMC3525149.pdf","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:9d161c2b778441798075f56c2dc25f8e","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/9d161c2b778441798075f56c2dc25f8e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Human Genomics, Vol 2, Iss 4, Pp 266-270 (2006)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1479-7364-2-4-266","doi":"https://doi.org/10.1186/1479-7364-2-4-266","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1479-7364-2-4-266","pdf_url":"https://humgenomics.biomedcentral.com/counter/pdf/10.1186/1479-7364-2-4-266","source":{"id":"https://openalex.org/S2738571386","display_name":"Human Genomics","issn_l":"1473-9542","issn":["1473-9542","1479-7364"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-d","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Human Genomics","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2139297998.pdf","grobid_xml":"https://content.openalex.org/works/W2139297998.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W189143987","https://openalex.org/W1965265115","https://openalex.org/W1985738984","https://openalex.org/W2055043387","https://openalex.org/W2058401000","https://openalex.org/W2096525273","https://openalex.org/W2104743461","https://openalex.org/W2107580398","https://openalex.org/W2107903949","https://openalex.org/W2108871359","https://openalex.org/W2115099562","https://openalex.org/W2118930999","https://openalex.org/W2119412782","https://openalex.org/W2121286926","https://openalex.org/W2122732537","https://openalex.org/W2128016314","https://openalex.org/W2136145671","https://openalex.org/W2142418779","https://openalex.org/W2145825942","https://openalex.org/W2161062388","https://openalex.org/W2166187656","https://openalex.org/W2166444569","https://openalex.org/W2247766769","https://openalex.org/W4213060373","https://openalex.org/W4230932396","https://openalex.org/W4233912639","https://openalex.org/W4245803912","https://openalex.org/W4248160505","https://openalex.org/W7052455153"],"related_works":["https://openalex.org/W7100342094","https://openalex.org/W2274932919","https://openalex.org/W2128016314","https://openalex.org/W4243357985","https://openalex.org/W2096403311","https://openalex.org/W4232767068","https://openalex.org/W2558692177","https://openalex.org/W2132522861","https://openalex.org/W7096384537","https://openalex.org/W2168783124"],"abstract_inverted_index":{"The":[0],"sequence":[1],"of":[2,16,31,78,84,88],"the":[3,14,28,42,58,75,86,95,100],"human":[4],"genome":[5,60,79],"provides":[6],"a":[7,35,65],"scaffold":[8],"on":[9],"which":[10],"numerous":[11],"annotations,":[12],"such":[13],"locations":[15],"genes,":[17],"can":[18],"be":[19],"laid.":[20],"Genome":[21,93,97],"browsers":[22,80],"have":[23],"been":[24],"created":[25],"to":[26,44,50,62],"allow":[27],"simultaneous":[29],"display":[30],"multiple":[32],"annotations":[33,52],"within":[34],"graphical":[36],"interface.":[37],"In":[38],"addition,":[39],"they":[40],"provide":[41],"ability":[43],"search":[45],"for":[46,53,57,69],"markers":[47],"and":[48,61,81,99],"sequences,":[49],"extract":[51],"specific":[54],"regions":[55],"or":[56],"whole":[59],"act":[63],"as":[64],"central":[66],"starting":[67],"point":[68],"genomic":[70],"research.":[71],"This":[72],"review":[73],"describes":[74],"basic":[76],"functionality":[77],"compares":[82],"three":[83],"them:":[85],"University":[87],"California":[89],"Santa":[90],"Cruz":[91],"(UCSC)":[92],"Browser,":[94],"Ensembl":[96],"Browser":[98],"NCBI":[101],"MapViewer.":[102]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}