{"id":"https://openalex.org/W2139151312","doi":"https://doi.org/10.1371/journal.pone.0038749","title":"Function and Regulation of Vibrio campbellii Proteorhodopsin: Acquired Phototrophy in a Classical Organoheterotroph","display_name":"Function and Regulation of Vibrio campbellii Proteorhodopsin: Acquired Phototrophy in a Classical Organoheterotroph","publication_year":2012,"publication_date":"2012-06-07","ids":{"openalex":"https://openalex.org/W2139151312","doi":"https://doi.org/10.1371/journal.pone.0038749","mag":"2139151312","pmid":"https://pubmed.ncbi.nlm.nih.gov/22741028","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/3380642"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pone.0038749","doi":"https://doi.org/10.1371/journal.pone.0038749","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0038749","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0038749&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS ONE","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0038749&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100401101","display_name":"Zheng Wang","orcid":"https://orcid.org/0000-0002-4278-323X","observed_orcids":["https://orcid.org/0000-0002-4278-323X"]},"institutions":[{"id":"https://openalex.org/I1288214837","display_name":"United States Naval Research Laboratory","ror":"https://ror.org/04d23a975","country_code":"US","type":"facility","lineage":["https://openalex.org/I1288214837","https://openalex.org/I1330347796","https://openalex.org/I175003984","https://openalex.org/I3130687028"]},{"id":"https://openalex.org/I4388482722","display_name":"Naval Research Laboratory Center for Bio/Molecular Science and Engineering","ror":"https://ror.org/021m46s67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1288214837","https://openalex.org/I1330347796","https://openalex.org/I175003984","https://openalex.org/I3130687028","https://openalex.org/I4388482722"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zheng Wang","raw_affiliation_strings":["Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, United States of America","institution_ids":["https://openalex.org/I1288214837","https://openalex.org/I4388482722"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054963805","display_name":"Thomas J. O\u2019Shaughnessy","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1288214837","display_name":"United States Naval Research Laboratory","ror":"https://ror.org/04d23a975","country_code":"US","type":"facility","lineage":["https://openalex.org/I1288214837","https://openalex.org/I1330347796","https://openalex.org/I175003984","https://openalex.org/I3130687028"]},{"id":"https://openalex.org/I4388482722","display_name":"Naval Research Laboratory Center for Bio/Molecular Science and Engineering","ror":"https://ror.org/021m46s67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1288214837","https://openalex.org/I1330347796","https://openalex.org/I175003984","https://openalex.org/I3130687028","https://openalex.org/I4388482722"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas J. O'Shaughnessy","raw_affiliation_strings":["Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, D.C., United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, D.C., United States of America","institution_ids":["https://openalex.org/I1288214837","https://openalex.org/I4388482722"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022100526","display_name":"Carissa M. Soto","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1288214837","display_name":"United States Naval Research Laboratory","ror":"https://ror.org/04d23a975","country_code":"US","type":"facility","lineage":["https://openalex.org/I1288214837","https://openalex.org/I1330347796","https://openalex.org/I175003984","https://openalex.org/I3130687028"]},{"id":"https://openalex.org/I4388482722","display_name":"Naval Research Laboratory Center for Bio/Molecular Science and Engineering","ror":"https://ror.org/021m46s67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1288214837","https://openalex.org/I1330347796","https://openalex.org/I175003984","https://openalex.org/I3130687028","https://openalex.org/I4388482722"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carissa M. Soto","raw_affiliation_strings":["Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, D.C., United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, D.C., United States of America","institution_ids":["https://openalex.org/I1288214837","https://openalex.org/I4388482722"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108368457","display_name":"Amir M. Rahbar","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amir M. Rahbar","raw_affiliation_strings":["National Cancer Institute, Bethesda, Maryland, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Cancer Institute, Bethesda, Maryland, United States of America","institution_ids":["https://openalex.org/I4210140884"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059044846","display_name":"Kelly L. Robertson","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1288214837","display_name":"United States Naval Research Laboratory","ror":"https://ror.org/04d23a975","country_code":"US","type":"facility","lineage":["https://openalex.org/I1288214837","https://openalex.org/I1330347796","https://openalex.org/I175003984","https://openalex.org/I3130687028"]},{"id":"https://openalex.org/I4388482722","display_name":"Naval Research Laboratory Center for Bio/Molecular Science and Engineering","ror":"https://ror.org/021m46s67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1288214837","https://openalex.org/I1330347796","https://openalex.org/I175003984","https://openalex.org/I3130687028","https://openalex.org/I4388482722"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kelly L. Robertson","raw_affiliation_strings":["Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, D.C., United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, D.C., United States of America","institution_ids":["https://openalex.org/I1288214837","https://openalex.org/I4388482722"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024253750","display_name":"Nikolai N. Lebedev","orcid":"https://orcid.org/0000-0003-1280-2839","observed_orcids":["https://orcid.org/0000-0003-1280-2839"]},"institutions":[{"id":"https://openalex.org/I1288214837","display_name":"United States Naval Research Laboratory","ror":"https://ror.org/04d23a975","country_code":"US","type":"facility","lineage":["https://openalex.org/I1288214837","https://openalex.org/I1330347796","https://openalex.org/I175003984","https://openalex.org/I3130687028"]},{"id":"https://openalex.org/I4388482722","display_name":"Naval Research Laboratory Center for Bio/Molecular Science and Engineering","ror":"https://ror.org/021m46s67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1288214837","https://openalex.org/I1330347796","https://openalex.org/I175003984","https://openalex.org/I3130687028","https://openalex.org/I4388482722"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nikolai Lebedev","raw_affiliation_strings":["Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, D.C., United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, D.C., United States of America","institution_ids":["https://openalex.org/I1288214837","https://openalex.org/I4388482722"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022791933","display_name":"Gary J. Vora","orcid":"https://orcid.org/0000-0002-0657-8597","observed_orcids":["https://orcid.org/0000-0002-0657-8597"]},"institutions":[{"id":"https://openalex.org/I1288214837","display_name":"United States Naval Research Laboratory","ror":"https://ror.org/04d23a975","country_code":"US","type":"facility","lineage":["https://openalex.org/I1288214837","https://openalex.org/I1330347796","https://openalex.org/I175003984","https://openalex.org/I3130687028"]},{"id":"https://openalex.org/I4388482722","display_name":"Naval Research Laboratory Center for Bio/Molecular Science and Engineering","ror":"https://ror.org/021m46s67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1288214837","https://openalex.org/I1330347796","https://openalex.org/I175003984","https://openalex.org/I3130687028","https://openalex.org/I4388482722"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Gary J. Vora","raw_affiliation_strings":["Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, D.C., United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, D.C., United States of America","institution_ids":["https://openalex.org/I1288214837","https://openalex.org/I4388482722"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5022791933"],"corresponding_institution_ids":["https://openalex.org/I1288214837","https://openalex.org/I4388482722"],"apc_list":{"value":2382,"currency":"USD","value_usd":2382},"apc_paid":{"value":2382,"currency":"USD","value_usd":2382},"fwci":2.6148,"has_fulltext":true,"cited_by_count":51,"citation_normalized_percentile":{"value":0.8987527,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"7","issue":"6","first_page":"e38749","last_page":"e38749"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12236","display_name":"Photoreceptor and optogenetics research","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12236","display_name":"Photoreceptor and optogenetics research","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.00139999995008111,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.0012000000569969416,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteorhodopsin","display_name":"proteorhodopsin","score":0.8949999809265137},{"id":"https://openalex.org/keywords/vibrio-campbellii","display_name":"Vibrio campbellii","score":0.996999979019165},{"id":"https://openalex.org/keywords/horizontal-gene-transfer","display_name":"horizontal gene transfer","score":0.7599999904632568},{"id":"https://openalex.org/keywords/photophosphorylation","display_name":"photophosphorylation","score":0.6449999809265137},{"id":"https://openalex.org/keywords/deletion-mutants","display_name":"deletion mutants","score":0.40400001406669617}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8422960042953491},{"id":"https://openalex.org/C2776154503","wikidata":"https://www.wikidata.org/wiki/Q753490","display_name":"Vibrio","level":3,"score":0.5116972923278809},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.48867252469062805},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.4094370901584625},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.327390193939209},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.23189964890480042}],"mesh":[{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008027","descriptor_name":"Light","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012243","descriptor_name":"Rhodopsin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012243","descriptor_name":"Rhodopsin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014733","descriptor_name":"Vibrio","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014733","descriptor_name":"Vibrio","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014733","descriptor_name":"Vibrio","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":true},{"descriptor_ui":"D025604","descriptor_name":"Rhodopsins, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D052817","descriptor_name":"Phototrophic Processes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D052817","descriptor_name":"Phototrophic Processes","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pone.0038749","doi":"https://doi.org/10.1371/journal.pone.0038749","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0038749","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0038749&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS ONE","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2387388","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3380642","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3380642","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3380642","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS One","raw_type":"Text"},{"id":"pmid:22741028","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22741028","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PloS one","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:d5bc2c239ca6484989017bc15b6a4e1a","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/d5bc2c239ca6484989017bc15b6a4e1a","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS ONE, Vol 7, Iss 6, p e38749 (2012)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/124169","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Function_and_Regulation_of_Vibrio_campbellii_Proteorhodopsin_Acquired_Phototrophy_in_a_Classical_Organoheterotroph/124169","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pone.0038749","doi":"https://doi.org/10.1371/journal.pone.0038749","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0038749","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0038749&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS ONE","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332923","display_name":"U.S. Navy","ror":"https://ror.org/03ar0mv07"},{"id":"https://openalex.org/F4320337345","display_name":"Office of Naval Research","ror":"https://ror.org/00rk2pe57"},{"id":"https://openalex.org/F4320337628","display_name":"U.S. Naval Research Laboratory","ror":"https://ror.org/04d23a975"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2139151312.pdf","grobid_xml":"https://content.openalex.org/works/W2139151312.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1824708390","https://openalex.org/W1967155120","https://openalex.org/W1980061686","https://openalex.org/W1980298106","https://openalex.org/W1984645362","https://openalex.org/W1991577952","https://openalex.org/W1997389755","https://openalex.org/W2007100565","https://openalex.org/W2014972500","https://openalex.org/W2016011269","https://openalex.org/W2019144073","https://openalex.org/W2030498531","https://openalex.org/W2031757246","https://openalex.org/W2034847939","https://openalex.org/W2036124299","https://openalex.org/W2037002356","https://openalex.org/W2065866056","https://openalex.org/W2072241820","https://openalex.org/W2072336276","https://openalex.org/W2072590703","https://openalex.org/W2081643683","https://openalex.org/W2089331864","https://openalex.org/W2099834878","https://openalex.org/W2103115373","https://openalex.org/W2122548219","https://openalex.org/W2129253452","https://openalex.org/W2135329955","https://openalex.org/W2135950518","https://openalex.org/W2136426835","https://openalex.org/W2143392415","https://openalex.org/W2144034658","https://openalex.org/W2154330214","https://openalex.org/W2157828105","https://openalex.org/W2162483537","https://openalex.org/W2166088978","https://openalex.org/W2167450753","https://openalex.org/W2171777099"],"related_works":["https://openalex.org/W7095306507","https://openalex.org/W2072241820","https://openalex.org/W4253878483","https://openalex.org/W2036124299","https://openalex.org/W1910852712","https://openalex.org/W628156795","https://openalex.org/W3213227263","https://openalex.org/W2615538567","https://openalex.org/W4247132141","https://openalex.org/W1858835455"],"abstract_inverted_index":{"Proteorhodopsins":[0],"(PRs)":[1],"are":[2,52],"retinal-binding":[3],"photoproteins":[4],"that":[5,59,179,194],"mediate":[6],"light-driven":[7],"proton":[8,119,152],"translocation":[9],"across":[10],"prokaryotic":[11],"cell":[12],"membranes.":[13],"Despite":[14],"their":[15],"abundance,":[16],"wide":[17],"distribution":[18],"and":[19,35,73,80,88,100,127,150,173,202,210,228],"contribution":[20],"to":[21,50,242,246],"the":[22,26,44,61,71,86,109,155,162,169,182,195,216,247],"bioenergy":[23],"budget":[24],"of":[25,32,47,75,145,165,171,184,198,233],"marine":[27,92,224],"photic":[28,248],"zone,":[29],"an":[30,136],"understanding":[31],"PR":[33,79,112,125,146,211],"function":[34,74,128],"physiological":[36],"significance":[37],"in":[38,85,129,154,168,176,181,221],"situ":[39,122],"has":[40,237],"been":[41],"hampered":[42],"as":[43,113],"vast":[45],"majority":[46],"PRs":[48],"studied":[49],"date":[51],"from":[53],"unculturable":[54],"bacteria":[55],"or":[56],"culturable":[57,87],"species":[58,227],"lack":[60],"tools":[62],"for":[63],"genetic":[64],"manipulation.":[65],"In":[66,121,190],"this":[67,235],"study,":[68],"we":[69,192],"describe":[70],"presence":[72,170],"a":[76,104,114,142,222,230],"horizontally":[77],"acquired":[78],"retinal":[81],"biosynthesis":[82],"gene":[83,240],"cluster":[84],"genetically":[89],"tractable":[90],"bioluminescent":[91],"bacterium":[93],"Vibrio":[94,226],"campbellii.":[95],"Pigmentation":[96],"analysis,":[97],"absorption":[98],"spectroscopy":[99],"photoinduction":[101,159],"assays":[102,160],"using":[103],"heterologous":[105],"over-expression":[106],"system":[107],"established":[108],"V.":[110,133],"campbellii":[111,134],"functional":[115],"green":[116],"light":[117,172],"absorbing":[118],"pump.":[120],"analyses":[123],"comparing":[124],"expression":[126,167,209],"wild":[130],"type":[131],"(WT)":[132],"with":[135],"isogenic":[137],"\u0394pR":[138,156],"deletion":[139],"mutant":[140],"revealed":[141],"marked":[143],"absence":[144],"membrane":[147],"localization,":[148],"pigmentation":[149],"light-induced":[151],"pumping":[153],"mutant.":[157],"Comparative":[158],"demonstrated":[161],"distinct":[163],"upregulation":[164],"pR":[166,208],"PR-mediated":[174],"photophosphorylation":[175],"WT":[177],"cells":[178],"resulted":[180],"enhancement":[183],"cellular":[185],"survival":[186],"during":[187],"respiratory":[188],"stress.":[189],"addition,":[191],"demonstrate":[193,218],"master":[196],"regulator":[197],"adaptive":[199],"stress":[200],"response":[201],"stationary":[203],"phase,":[204],"RpoS1,":[205],"positively":[206],"regulates":[207],"holoprotein":[212],"pigmentation.":[213],"Taken":[214],"together,":[215],"results":[217],"facultative":[219],"phototrophy":[220],"classical":[223],"organoheterotrophic":[225],"provide":[229],"salient":[231],"example":[232],"how":[234],"organism":[236],"exploited":[238],"lateral":[239],"transfer":[241],"further":[243],"its":[244],"adaptation":[245],"zone.":[249]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-11-03T10:50:19.383937","created_date":"2016-06-24T00:00:00"}
