{"id":"https://openalex.org/W2136425874","doi":"https://doi.org/10.1109/isbi.2011.5872531","title":"3D elastic registration improves HARDI-derived fiber alignment and automated tract clustering","display_name":"3D elastic registration improves HARDI-derived fiber alignment and automated tract clustering","publication_year":2011,"publication_date":"2011-03-01","ids":{"openalex":"https://openalex.org/W2136425874","doi":"https://doi.org/10.1109/isbi.2011.5872531","mag":"2136425874"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2011.5872531","doi":"https://doi.org/10.1109/isbi.2011.5872531","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2011.5872531","pdf_url":null,"source":{"id":"https://openalex.org/S4363605129","display_name":"IEEE International Symposium on Biomedical Imaging (ISBI)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"},"volume":null,"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067957859","display_name":"Yan Jin","orcid":"https://orcid.org/0000-0001-9392-5552","observed_orcids":["https://orcid.org/0000-0001-9392-5552"]},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yan Jin","raw_affiliation_strings":["Laboratory of Neuro Imaging, Department of Neurology,School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA","Laboratory of Neuro Imaging, Department of Neurology, UCLA School of Medicine, Los Angeles CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Neuro Imaging, Department of Neurology,School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Laboratory of Neuro Imaging, Department of Neurology, UCLA School of Medicine, Los Angeles CA, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090261504","display_name":"Yonggang Shi","orcid":"https://orcid.org/0000-0002-3466-4302","observed_orcids":["https://orcid.org/0000-0002-3466-4302"]},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yonggang Shi","raw_affiliation_strings":["Laboratory of Neuro Imaging, Department of Neurology,School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA","Laboratory of Neuro Imaging, Department of Neurology, UCLA School of Medicine, Los Angeles CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Neuro Imaging, Department of Neurology,School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Laboratory of Neuro Imaging, Department of Neurology, UCLA School of Medicine, Los Angeles CA, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019781190","display_name":"Neda Jahanshad","orcid":"https://orcid.org/0000-0003-4401-8950","observed_orcids":["https://orcid.org/0000-0003-4401-8950"]},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Neda Jahanshad","raw_affiliation_strings":["Laboratory of Neuro Imaging, Department of Neurology,School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA","Laboratory of Neuro Imaging, Department of Neurology, UCLA School of Medicine, Los Angeles CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Neuro Imaging, Department of Neurology,School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Laboratory of Neuro Imaging, Department of Neurology, UCLA School of Medicine, Los Angeles CA, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029485281","display_name":"Iman Aganj","orcid":"https://orcid.org/0000-0002-4673-1293","observed_orcids":["https://orcid.org/0000-0002-4673-1293"]},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]},{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Iman Aganj","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, USA","Laboratory of Neuro Imaging, Department of Neurology, UCLA School of Medicine, Los Angeles CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"Laboratory of Neuro Imaging, Department of Neurology, UCLA School of Medicine, Los Angeles CA, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025218580","display_name":"Guillermo Sapiro","orcid":"https://orcid.org/0000-0001-9190-6964","observed_orcids":["https://orcid.org/0000-0001-9190-6964"]},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guillermo Sapiro","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, USA","Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, USA#TAB#","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014949118","display_name":"Arthur W. Toga","orcid":"https://orcid.org/0000-0001-7902-3755","observed_orcids":["https://orcid.org/0000-0001-7902-3755","https://orcid.org/0000-0003-1454-8643"]},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arthur W. Toga","raw_affiliation_strings":["Laboratory of Neuro Imaging, Department of Neurology,School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA","Laboratory of Neuro Imaging, Department of Neurology, UCLA School of Medicine, Los Angeles CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Neuro Imaging, Department of Neurology,School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Laboratory of Neuro Imaging, Department of Neurology, UCLA School of Medicine, Los Angeles CA, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100606557","display_name":"Paul M. Thompson","orcid":"https://orcid.org/0000-0002-4720-8867","observed_orcids":["https://orcid.org/0000-0002-4720-8867","https://orcid.org/0000-0003-2476-2803","https://orcid.org/0000-0002-2305-8438"]},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul M. Thompson","raw_affiliation_strings":["Laboratory of Neuro Imaging, Department of Neurology,School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA","Laboratory of Neuro Imaging, Department of Neurology, UCLA School of Medicine, Los Angeles CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Neuro Imaging, Department of Neurology,School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Laboratory of Neuro Imaging, Department of Neurology, UCLA School of Medicine, Los Angeles CA, USA","institution_ids":["https://openalex.org/I161318765"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":6.0899,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.97057292,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"27","issue":null,"first_page":"822","last_page":"826"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.0,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/high-angular-resolution-diffusion-imaging","display_name":"high angular resolution diffusion imaging","score":0.878000020980835},{"id":"https://openalex.org/keywords/fiber-clustering","display_name":"fiber clustering","score":0.5099999904632568},{"id":"https://openalex.org/keywords/tractography","display_name":"tractography","score":0.75},{"id":"https://openalex.org/keywords/fiber-alignment","display_name":"fiber alignment","score":0.5809999704360962},{"id":"https://openalex.org/keywords/orientation-distribution-function","display_name":"orientation distribution function","score":0.7649999856948853},{"id":"https://openalex.org/keywords/hough-transform","display_name":"Hough transform","score":0.9549999833106995},{"id":"https://openalex.org/keywords/fractional-anisotropy","display_name":"fractional anisotropy","score":0.9359999895095825},{"id":"https://openalex.org/keywords/spectral-clustering","display_name":"spectral clustering","score":0.6489999890327454},{"id":"https://openalex.org/keywords/k-means-clustering","display_name":"K-means clustering","score":0.7570000290870667}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7001000642776489},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6586509943008423},{"id":"https://openalex.org/C149550507","wikidata":"https://www.wikidata.org/wiki/Q899360","display_name":"Diffusion MRI","level":3,"score":0.5987874269485474},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5563991069793701},{"id":"https://openalex.org/C84787856","wikidata":"https://www.wikidata.org/wiki/Q3076659","display_name":"Tractography","level":4,"score":0.5545022487640381},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.553009569644928},{"id":"https://openalex.org/C157202957","wikidata":"https://www.wikidata.org/wiki/Q1659609","display_name":"Image warping","level":2,"score":0.548525869846344},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5426760911941528},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5132241249084473},{"id":"https://openalex.org/C16345878","wikidata":"https://www.wikidata.org/wiki/Q107472979","display_name":"Orientation (vector space)","level":2,"score":0.4673369824886322},{"id":"https://openalex.org/C519885992","wikidata":"https://www.wikidata.org/wiki/Q161","display_name":"Fiber","level":2,"score":0.44936054944992065},{"id":"https://openalex.org/C89916169","wikidata":"https://www.wikidata.org/wiki/Q17014600","display_name":"Fractional anisotropy","level":4,"score":0.43862199783325195},{"id":"https://openalex.org/C166704113","wikidata":"https://www.wikidata.org/wiki/Q861092","display_name":"Image registration","level":3,"score":0.42928311228752136},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.28120970726013184},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.19932278990745544},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.17476099729537964},{"id":"https://openalex.org/C143409427","wikidata":"https://www.wikidata.org/wiki/Q161238","display_name":"Magnetic resonance imaging","level":2,"score":0.09176436066627502},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.08345016837120056},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isbi.2011.5872531","doi":"https://doi.org/10.1109/isbi.2011.5872531","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2011.5872531","pdf_url":null,"source":{"id":"https://openalex.org/S4363605129","display_name":"IEEE International Symposium on Biomedical Imaging (ISBI)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.294.8819","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.294.8819","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.loni.ucla.edu/~thompson/PDF/ISBI2011/YanTractClust-ISBI11.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5683000087738037,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"},{"id":"https://openalex.org/F4320334737","display_name":"National Medical Research Council","ror":"https://ror.org/04x3cxs03"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1572551059","https://openalex.org/W1964802316","https://openalex.org/W1981176642","https://openalex.org/W1988954604","https://openalex.org/W2011481459","https://openalex.org/W2019737946","https://openalex.org/W2032068124","https://openalex.org/W2040769201","https://openalex.org/W2043195060","https://openalex.org/W2065511825","https://openalex.org/W2081043253","https://openalex.org/W2101203185","https://openalex.org/W2103536416","https://openalex.org/W2108895118","https://openalex.org/W2114856020","https://openalex.org/W2132914434","https://openalex.org/W2144314866","https://openalex.org/W2145132952","https://openalex.org/W2149600690"],"related_works":["https://openalex.org/W2162848374","https://openalex.org/W2131326541","https://openalex.org/W2547701734","https://openalex.org/W1553234079","https://openalex.org/W7100392767","https://openalex.org/W7095622647","https://openalex.org/W2182235246","https://openalex.org/W96948313","https://openalex.org/W1482977697","https://openalex.org/W4392193811"],"abstract_inverted_index":{"High":[0],"angular":[1],"resolution":[2],"diffusion":[3],"imaging":[4],"(HARDI)":[5],"allows":[6],"population":[7,38,144],"studies":[8,145],"of":[9,109,119],"fiber":[10,121,131],"integrity":[11],"and":[12,102],"connectivity.":[13],"Tractography":[14],"can":[15],"extract":[16],"individual":[17],"fibers.":[18],"For":[19],"group":[20],"studies,":[21],"fibers":[22,70,98,111],"must":[23],"be":[24],"clustered":[25],"into":[26],"recognizable":[27],"bundles":[28],"found":[29],"consistently":[30],"across":[31,99],"subjects.":[32,100],"Nonlinear":[33],"image":[34],"registration":[35,79],"may":[36],"improve":[37],"clustering.":[39,149],"To":[40],"test":[41],"this,":[42],"we":[43,105],"performed":[44,106],"whole-brain":[45],"tractography":[46],"with":[47,61,126],"an":[48,127],"orientation":[49],"distribution":[50],"function":[51],"based":[52,116],"Hough":[53],"transform":[54],"method":[55],"in":[56],"20":[57],"young":[58],"adults":[59],"scanned":[60],"4":[62],"Tesla,":[63],"105-gradient":[64],"HARDI.":[65],"We":[66],"warped":[67],"all":[68],"extracted":[69],"to":[71,85],"a":[72,76,113,120],"geometrically-centered":[73],"template":[74],"using":[75,112,146],"3D":[77],"elastic":[78],"driven":[80],"by":[81,93],"fractional":[82],"anisotropy":[83],"maps,":[84],"align":[86],"embedded":[87],"tracts.":[88],"Fiber":[89],"alignment":[90],"was":[91],"evaluated":[92],"calculating":[94],"distances":[95],"among":[96],"corresponding":[97],"Before":[101],"after":[103],"warping,":[104],"spectral":[107],"clustering":[108,136],"the":[110],"k-means":[114],"method,":[115],"on":[117],"eigenvectors":[118],"similarity":[122],"matrix.":[123],"In":[124],"tests":[125],"overlap":[128],"metric,":[129],"non-rigid":[130],"warping":[132,139],"yielded":[133],"more":[134],"robust":[135],"results.":[137],"Non-rigid":[138],"is":[140],"therefore":[141],"advantageous":[142],"for":[143],"multi-subject":[147],"tract":[148]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-10-26T11:51:55.731654","created_date":"2016-06-24T00:00:00"}
