{"id":"https://openalex.org/W2136198635","doi":"https://doi.org/10.1080/10635150701266848","title":"Genomic Analysis and Geographic Visualization of the Spread of Avian Influenza (H5N1)","display_name":"Genomic Analysis and Geographic Visualization of the Spread of Avian Influenza (H5N1)","publication_year":2007,"publication_date":"2007-04-01","ids":{"openalex":"https://openalex.org/W2136198635","doi":"https://doi.org/10.1080/10635150701266848","mag":"2136198635","pmid":"https://pubmed.ncbi.nlm.nih.gov/17464886"},"language":"en","primary_location":{"id":"doi:10.1080/10635150701266848","doi":"https://doi.org/10.1080/10635150701266848","is_oa":false,"landing_page_url":"https://doi.org/10.1080/10635150701266848","pdf_url":null,"source":{"id":"https://openalex.org/S65478581","display_name":"Systematic Biology","issn_l":"1063-5157","issn":["1063-5157","1076-836X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","jufo-3","ki-jl-1","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Systematic Biology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022518932","display_name":"Daniel A. Janies","orcid":"https://orcid.org/0000-0002-7890-9906","observed_orcids":["https://orcid.org/0000-0002-7890-9906"]},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Daniel Janies","raw_affiliation_strings":["Department of Biomedical Informatics, The Ohio State University, 3190 Graves Hall, 333 W. 10th Ave., Columbus, Ohio, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, The Ohio State University, 3190 Graves Hall, 333 W. 10th Ave., Columbus, Ohio, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103400800","display_name":"Andrew William Hill","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew W Hill","raw_affiliation_strings":["Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, Colorado, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, Colorado, USA","institution_ids":["https://openalex.org/I188538660"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017811194","display_name":"Robert Guralnick","orcid":"https://orcid.org/0000-0001-6682-1504","observed_orcids":["https://orcid.org/0000-0001-6682-1504"]},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Guralnick","raw_affiliation_strings":["Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, Colorado, USA","University of Colorado Museum, University of Colorado, Boulder, Colorado, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, Colorado, USA","institution_ids":["https://openalex.org/I188538660"]},{"raw_affiliation_string":"University of Colorado Museum, University of Colorado, Boulder, Colorado, USA","institution_ids":["https://openalex.org/I188538660"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076166249","display_name":"Farhat Habib","orcid":"https://orcid.org/0000-0002-4295-2750","observed_orcids":["https://orcid.org/0000-0002-4295-2750"]},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Farhat Habib","raw_affiliation_strings":["Department of Biomedical Informatics, The Ohio State University, 3190 Graves Hall, 333 W. 10th Ave., Columbus, Ohio, USA","Department of Physics, The Ohio State University, 1040 Physics Research Building, 191 West Woodruff Avenue, Columbus, Ohio, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, The Ohio State University, 3190 Graves Hall, 333 W. 10th Ave., Columbus, Ohio, USA","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"Department of Physics, The Ohio State University, 1040 Physics Research Building, 191 West Woodruff Avenue, Columbus, Ohio, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010670462","display_name":"Eric Waltari","orcid":"https://orcid.org/0000-0001-6930-9645","observed_orcids":["https://orcid.org/0000-0001-6930-9645"]},"institutions":[{"id":"https://openalex.org/I1338124936","display_name":"American Museum of Natural History","ror":"https://ror.org/03thb3e06","country_code":"US","type":"archive","lineage":["https://openalex.org/I1338124936"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric Waltari","raw_affiliation_strings":["Division of Invertebrate Zoology, American Museum of Natural History, Central Park West at 79th Street, New York, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Invertebrate Zoology, American Museum of Natural History, Central Park West at 79th Street, New York, New York, USA","institution_ids":["https://openalex.org/I1338124936"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068555585","display_name":"Ward C. Wheeler","orcid":"https://orcid.org/0000-0001-6977-984X","observed_orcids":["https://orcid.org/0000-0001-6977-984X"]},"institutions":[{"id":"https://openalex.org/I1338124936","display_name":"American Museum of Natural History","ror":"https://ror.org/03thb3e06","country_code":"US","type":"archive","lineage":["https://openalex.org/I1338124936"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ward C Wheeler","raw_affiliation_strings":["Division of Invertebrate Zoology, American Museum of Natural History, Central Park West at 79th Street, New York, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Invertebrate Zoology, American Museum of Natural History, Central Park West at 79th Street, New York, New York, USA","institution_ids":["https://openalex.org/I1338124936"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5022518932"],"corresponding_institution_ids":["https://openalex.org/I52357470"],"apc_list":{"value":2166,"currency":"USD","value_usd":2166},"apc_paid":null,"fwci":7.301,"has_fulltext":true,"cited_by_count":67,"citation_normalized_percentile":{"value":0.97763703,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":87,"max":97},"biblio":{"volume":"56","issue":"2","first_page":"321","last_page":"329"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12492","display_name":"Zoonotic diseases and public health","score":0.0,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/h5n1-avian-influenza","display_name":"H5N1 avian influenza","score":0.8579999804496765},{"id":"https://openalex.org/keywords/host-switching","display_name":"host switching","score":0.5950000286102295},{"id":"https://openalex.org/keywords/geographic-spread","display_name":"geographic spread","score":0.4830000102519989},{"id":"https://openalex.org/keywords/wild-birds","display_name":"wild birds","score":0.5350000262260437},{"id":"https://openalex.org/keywords/trait-evolution","display_name":"character evolution","score":0.5249999761581421},{"id":"https://openalex.org/keywords/pandemic-influenza-risk","display_name":"pandemic influenza risk","score":0.36899998784065247},{"id":"https://openalex.org/keywords/phylogenetic-mapping","display_name":"phylogenetic mapping","score":0.4620000123977661}],"concepts":[{"id":"https://openalex.org/C519248777","wikidata":"https://www.wikidata.org/wiki/Q160122","display_name":"Influenza A virus subtype H5N1","level":3,"score":0.8439939618110657},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8416138887405396},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6350456476211548},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.6101492643356323},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.458798348903656},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.3960930407047272},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.37849318981170654},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.12554284930229187},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.10529029369354248},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.06214830279350281}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001717","descriptor_name":"Birds","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005585","descriptor_name":"Influenza in Birds","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005585","descriptor_name":"Influenza in Birds","qualifier_ui":"Q000635","qualifier_name":"transmission","is_major_topic":true},{"descriptor_ui":"D005585","descriptor_name":"Influenza in Birds","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005843","descriptor_name":"Geography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D024882","descriptor_name":"Drug Resistance, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053124","descriptor_name":"Influenza A Virus, H5N1 Subtype","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1080/10635150701266848","doi":"https://doi.org/10.1080/10635150701266848","is_oa":false,"landing_page_url":"https://doi.org/10.1080/10635150701266848","pdf_url":null,"source":{"id":"https://openalex.org/S65478581","display_name":"Systematic Biology","issn_l":"1063-5157","issn":["1063-5157","1076-836X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","jufo-3","ki-jl-1","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Systematic Biology","raw_type":"journal-article"},{"id":"pmid:17464886","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17464886","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Systematic biology","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.908.1444","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.908.1444","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://sysbio.oxfordjournals.org/content/56/2/321.full.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.46810001134872437}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1516953179","https://openalex.org/W1519266993","https://openalex.org/W1575232238","https://openalex.org/W1603867145","https://openalex.org/W1969919797","https://openalex.org/W1972113071","https://openalex.org/W1974150316","https://openalex.org/W1976670588","https://openalex.org/W1983212354","https://openalex.org/W1984669065","https://openalex.org/W1999984759","https://openalex.org/W2011983340","https://openalex.org/W2023753903","https://openalex.org/W2026391844","https://openalex.org/W2027869475","https://openalex.org/W2030956523","https://openalex.org/W2032664008","https://openalex.org/W2040708857","https://openalex.org/W2045516850","https://openalex.org/W2053392998","https://openalex.org/W2056584399","https://openalex.org/W2066983820","https://openalex.org/W2072249348","https://openalex.org/W2091526576","https://openalex.org/W2100506962","https://openalex.org/W2138432936","https://openalex.org/W2149051606","https://openalex.org/W2152226780","https://openalex.org/W2152327166","https://openalex.org/W2160881014","https://openalex.org/W2162235679","https://openalex.org/W2166582607","https://openalex.org/W3206657856"],"related_works":["https://openalex.org/W1984399847","https://openalex.org/W2068279398","https://openalex.org/W7100999720","https://openalex.org/W2076215076","https://openalex.org/W2068930226","https://openalex.org/W2007172672","https://openalex.org/W2150061842","https://openalex.org/W7098921649","https://openalex.org/W7099696055","https://openalex.org/W2210095426"],"abstract_inverted_index":{"Wild":[0],"birds":[1],"are":[2,155,170,227],"known":[3],"to":[4,36,46,66,85,104,129,151,167,212,289],"carry":[5],"all":[6],"strains":[7,16],"of":[8,14,21,51,57,63,72,99,135,160,178,194,232,259,294,298,320,324],"influenza":[9,27,37,58,137],"and,":[10],"in":[11,29,184,192,224,246,261,279,292,327],"theory,":[12],"any":[13,341],"these":[15,168],"could":[17],"be":[18,67,105,290],"the":[19,22,70,81,87,131,140,158,165,185,230,233,280,299],"source":[20],"next":[23],"human":[24],"pandemic.":[25],"Most":[26],"infections":[28,50],"humans":[30,52],"since":[31],"1968":[32],"have":[33,79,101,113,188],"been":[34],"attributed":[35],"A,":[38],"antigenic":[39],"subtypes":[40],"H3N2":[41],"or":[42],"H1N1.":[43],"However,":[44,305],"due":[45],"recent":[47],"and":[48,91,94,96,118,124,133,172,198,208,219,236,257],"novel":[49],"with":[53,229,276,332,340],"an":[54,115],"avian":[55,153,195],"strain":[56],"(H5N1),":[59],"a":[60,206,242,318,321],"great":[61],"deal":[62],"attention":[64],"continues":[65],"focused":[68],"on":[69,147],"spread":[71,134,159,231],"H5N1.":[73,161],"Key":[74],"questions":[75,169],"include":[76],"which":[77,97,152],"hosts":[78,154,278],"carried":[80],"virus":[82,234],"from":[83,181],"Asia":[84],"Russia,":[86],"Middle":[88],"East,":[89],"East":[90,300],"West":[92],"Africa,":[93],"Europe,":[95],"mutations":[98],"H5N1":[100,136,179,202,260,295,325],"allowed":[102],"it":[103],"transmitted":[106],"among":[107,237],"various":[108],"hosts,":[109],"including":[110],"humans.":[111],"We":[112,162,239,314],"created":[114],"interactive":[116],"genomic":[117],"geographic":[119],"map":[120],"using":[121,209],"phylogenetic":[122],"software":[123],"Google":[125],"Earth":[126],"(GE;":[127],"earth.google.com)":[128],"reconstruct":[130,213],"evolution":[132,211],"lineages":[138,177],"over":[139],"past":[141,186],"decade.":[142],"Our":[143],"results":[144],"provide":[145],"insight":[146],"competing":[148],"hypotheses":[149],"as":[150],"responsible":[156],"for":[157,254],"show":[163],"that":[164,241,252,317],"answers":[166],"temporally":[171],"geographically":[173,235,333],"context":[174],"specific.":[175],"Various":[176],"spreading":[180],"southern":[182],"China":[183],"decade":[187],"exploited":[189],"diverse":[190],"pathways":[191],"terms":[193],"host":[196,214,342],"taxa":[197],"geography.":[199],"By":[200],"examining":[201],"phylogenies":[203],"projected":[204],"onto":[205],"globe":[207],"character":[210],"shifts,":[215],"we":[216],"studied,":[217],"visually":[218],"statistically,":[220],"whether":[221],"key":[222,243],"genotypes":[223],"viral":[225],"proteins":[226],"correlated":[228,331,339],"hosts.":[238],"find":[240,316],"genotype":[244,287,319],"(Lys-627":[245],"polymerase":[247],"basic":[248],"protein":[249,323],"2,":[250],"PB2)":[251],"allows":[253],"increased":[255],"replication":[256],"virulence":[258],"laboratory":[262],"mice":[263],"(Subbarao":[264],"et":[265,269],"al.,":[266,270],"1993;":[267],"Shinya":[268],"2004)":[271],"is":[272,308,330],"also":[273,315],"significantly":[274],"associated":[275],"mammalian":[277],"field":[281],"(Table":[282,312],"1).":[283,304,313],"In":[284],"visualizations,":[285],"this":[286,306],"appears":[288],"prevalent":[291],"isolates":[293],"circulating":[296],"west":[297],"Asian\u2013Australian":[301],"flyway":[302],"(Figure":[303],"pattern":[307],"not":[309,337],"supported":[310],"statistically":[311],"surface":[322],"(Arg-110":[326],"neuraminidase,":[328],"NA)":[329],"distinct":[334],"clades":[335],"but":[336],"strongly":[338],"type.":[343]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":4}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2016-06-24T00:00:00"}
