{"id":"https://openalex.org/W2129285402","doi":"https://doi.org/10.1111/j.1399-3054.2012.01649.x","title":"A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain\u2010specific YUCCA","display_name":"A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain\u2010specific YUCCA","publication_year":2012,"publication_date":"2012-05-14","ids":{"openalex":"https://openalex.org/W2129285402","doi":"https://doi.org/10.1111/j.1399-3054.2012.01649.x","mag":"2129285402","pmid":"https://pubmed.ncbi.nlm.nih.gov/22582989"},"language":"en","primary_location":{"id":"doi:10.1111/j.1399-3054.2012.01649.x","doi":"https://doi.org/10.1111/j.1399-3054.2012.01649.x","is_oa":false,"landing_page_url":"https://doi.org/10.1111/j.1399-3054.2012.01649.x","pdf_url":null,"source":{"id":"https://openalex.org/S185046733","display_name":"Physiologia Plantarum","issn_l":"0031-9317","issn":["0031-9317","1399-3054"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Physiologia Plantarum","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040303208","display_name":"Yousef M. Abu-Zaitoon","orcid":"https://orcid.org/0000-0002-1952-2509","observed_orcids":["https://orcid.org/0000-0002-1952-2509"]},"institutions":[{"id":"https://openalex.org/I90745801","display_name":"University of New England","ror":"https://ror.org/04r659a56","country_code":"AU","type":"education","lineage":["https://openalex.org/I90745801"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Yousef M. Abu\u2010Zaitoon","raw_affiliation_strings":["Molecular and Cellular Biology, University of New England, Armidale, New South Wales, Australia","Present address: Department of applied biological science, Al-Ghad International Applied Medical Science University, Jeddah, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular and Cellular Biology, University of New England, Armidale, New South Wales, Australia","institution_ids":["https://openalex.org/I90745801"]},{"raw_affiliation_string":"Present address: Department of applied biological science, Al-Ghad International Applied Medical Science University, Jeddah, Saudi Arabia","institution_ids":[]}]},{"author_position":"middle","author":{"id":null,"display_name":"Karina Bennett","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I90745801","display_name":"University of New England","ror":"https://ror.org/04r659a56","country_code":"AU","type":"education","lineage":["https://openalex.org/I90745801"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Karina Bennett","raw_affiliation_strings":["Molecular and Cellular Biology, University of New England, Armidale, New South Wales, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular and Cellular Biology, University of New England, Armidale, New South Wales, Australia","institution_ids":["https://openalex.org/I90745801"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007724881","display_name":"Jennifer Normanly","orcid":"https://orcid.org/0000-0001-8232-7258","observed_orcids":["https://orcid.org/0000-0001-8232-7258"]},"institutions":[{"id":"https://openalex.org/I24603500","display_name":"University of Massachusetts Amherst","ror":"https://ror.org/0072zz521","country_code":"US","type":"education","lineage":["https://openalex.org/I24603500"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer Normanly","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003, USA","institution_ids":["https://openalex.org/I24603500"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032765414","display_name":"Heather M. Nonhebel","orcid":"https://orcid.org/0000-0001-9055-3095","observed_orcids":["https://orcid.org/0000-0001-9055-3095"]},"institutions":[{"id":"https://openalex.org/I90745801","display_name":"University of New England","ror":"https://ror.org/04r659a56","country_code":"AU","type":"education","lineage":["https://openalex.org/I90745801"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Heather M. Nonhebel","raw_affiliation_strings":["Molecular and Cellular Biology, University of New England, Armidale, New South Wales, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular and Cellular Biology, University of New England, Armidale, New South Wales, Australia","institution_ids":["https://openalex.org/I90745801"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5032765414"],"corresponding_institution_ids":["https://openalex.org/I90745801"],"apc_list":{"value":4150,"currency":"USD","value_usd":4150},"apc_paid":null,"fwci":5.47,"has_fulltext":false,"cited_by_count":133,"citation_normalized_percentile":{"value":0.9562117,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"146","issue":"4","first_page":"487","last_page":"499"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11237","display_name":"Plant Gene Expression Analysis","score":0.002899999963119626,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.0024999999441206455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/indole-3-acetic-acid","display_name":"indole-3-acetic acid","score":0.9929999709129333},{"id":"https://openalex.org/keywords/rice-grain-development","display_name":"rice grain development","score":0.8889999985694885},{"id":"https://openalex.org/keywords/tryptophan-aminotransferase","display_name":"tryptophan aminotransferase","score":0.9279999732971191},{"id":"https://openalex.org/keywords/yucca","display_name":"Yucca","score":0.8970000147819519},{"id":"https://openalex.org/keywords/tryptophan-decarboxylase","display_name":"tryptophan decarboxylase","score":0.8640000224113464},{"id":"https://openalex.org/keywords/endosperm","display_name":"endosperm","score":0.734000027179718},{"id":"https://openalex.org/keywords/starch-accumulation","display_name":"starch accumulation","score":0.9470000267028809},{"id":"https://openalex.org/keywords/grain-filling","display_name":"grain filling","score":0.6869999766349792},{"id":"https://openalex.org/keywords/auxin-biosynthesis","display_name":"auxin biosynthesis","score":0.8659999966621399},{"id":"https://openalex.org/keywords/gene-expression","display_name":"gene expression","score":0.6079999804496765},{"id":"https://openalex.org/keywords/phylogenetic-analysis","display_name":"phylogenetic analysis","score":0.8489999771118164}],"concepts":[{"id":"https://openalex.org/C113442657","wikidata":"https://www.wikidata.org/wiki/Q25624","display_name":"Endosperm","level":2,"score":0.9479731321334839},{"id":"https://openalex.org/C2778543611","wikidata":"https://www.wikidata.org/wiki/Q161426","display_name":"Oryza sativa","level":3,"score":0.7714420557022095},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5631766319274902},{"id":"https://openalex.org/C2776706248","wikidata":"https://www.wikidata.org/wiki/Q181003","display_name":"Tryptophan","level":3,"score":0.5146311521530151},{"id":"https://openalex.org/C529335014","wikidata":"https://www.wikidata.org/wiki/Q41534","display_name":"Starch","level":2,"score":0.4986882209777832},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.47458434104919434},{"id":"https://openalex.org/C100701293","wikidata":"https://www.wikidata.org/wiki/Q193838","display_name":"Germination","level":2,"score":0.4662201702594757},{"id":"https://openalex.org/C100836998","wikidata":"https://www.wikidata.org/wiki/Q506139","display_name":"Caryopsis","level":3,"score":0.44463425874710083},{"id":"https://openalex.org/C553450214","wikidata":"https://www.wikidata.org/wiki/Q851162","display_name":"Biosynthesis","level":3,"score":0.415531724691391},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.3711117208003998},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.36034834384918213},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3484879434108734},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.11704480648040771}],"mesh":[{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007210","descriptor_name":"Indoleacetic Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":true},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D012639","descriptor_name":"Seeds","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D012639","descriptor_name":"Seeds","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012639","descriptor_name":"Seeds","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":true},{"descriptor_ui":"D013213","descriptor_name":"Starch","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013213","descriptor_name":"Starch","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015971","descriptor_name":"Gene Expression Regulation, Enzymologic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020133","descriptor_name":"Reverse Transcriptase Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051279","descriptor_name":"Tryptophan Transaminase","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D051279","descriptor_name":"Tryptophan Transaminase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D054817","descriptor_name":"Pollination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1111/j.1399-3054.2012.01649.x","doi":"https://doi.org/10.1111/j.1399-3054.2012.01649.x","is_oa":false,"landing_page_url":"https://doi.org/10.1111/j.1399-3054.2012.01649.x","pdf_url":null,"source":{"id":"https://openalex.org/S185046733","display_name":"Physiologia Plantarum","issn_l":"0031-9317","issn":["0031-9317","1399-3054"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Physiologia Plantarum","raw_type":"journal-article"},{"id":"pmid:22582989","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22582989","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Physiologia plantarum","raw_type":"Journal Article"},{"id":"pmh:oai:rune.une.edu.au:1959.11/12047","doi":null,"is_oa":false,"landing_page_url":"https://hdl.handle.net/1959.11/12047","pdf_url":null,"source":{"id":"https://openalex.org/S7407055448","display_name":"RUNE (Research UNE)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.978600025177002,"id":"https://metadata.un.org/sdg/2"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":48,"referenced_works":["https://openalex.org/W1963718311","https://openalex.org/W1976324993","https://openalex.org/W1979313520","https://openalex.org/W1988440331","https://openalex.org/W2001483555","https://openalex.org/W2002185303","https://openalex.org/W2004963914","https://openalex.org/W2008183439","https://openalex.org/W2008232358","https://openalex.org/W2009370194","https://openalex.org/W2019920938","https://openalex.org/W2031905938","https://openalex.org/W2033474316","https://openalex.org/W2037726657","https://openalex.org/W2039679636","https://openalex.org/W2043618186","https://openalex.org/W2047284611","https://openalex.org/W2053427298","https://openalex.org/W2053689348","https://openalex.org/W2055323344","https://openalex.org/W2057668660","https://openalex.org/W2064059288","https://openalex.org/W2064630983","https://openalex.org/W2069102911","https://openalex.org/W2071247235","https://openalex.org/W2072532490","https://openalex.org/W2073851171","https://openalex.org/W2075769391","https://openalex.org/W2091868541","https://openalex.org/W2094134263","https://openalex.org/W2097123946","https://openalex.org/W2100293988","https://openalex.org/W2113820879","https://openalex.org/W2113877382","https://openalex.org/W2116572761","https://openalex.org/W2117141927","https://openalex.org/W2117543773","https://openalex.org/W2119836003","https://openalex.org/W2132926880","https://openalex.org/W2141481960","https://openalex.org/W2143788939","https://openalex.org/W2147213485","https://openalex.org/W2150297520","https://openalex.org/W2150650996","https://openalex.org/W2150943030","https://openalex.org/W2158957969","https://openalex.org/W2164239671","https://openalex.org/W3199943451"],"related_works":["https://openalex.org/W3092125956","https://openalex.org/W2175408613","https://openalex.org/W3137794639","https://openalex.org/W3168065216","https://openalex.org/W3027756752","https://openalex.org/W2074375636","https://openalex.org/W2346424609","https://openalex.org/W3183877874","https://openalex.org/W4403745486","https://openalex.org/W7217823844"],"abstract_inverted_index":{"The":[0,25,57,75],"indole-3-acetic":[1],"acid":[2],"(IAA)":[3],"content":[4,62,79],"of":[5,8,67,73,86,108,124,145,167,196,212],"developing":[6,171,205],"grains":[7,173,207],"Oryza":[9],"sativa":[10],"subsp.":[11],"japonica":[12],"was":[13,46,80],"measured":[14,95],"by":[15,53,96],"combined":[16],"liquid":[17],"chromatography,":[18],"tandem":[19],"mass":[20],"spectrometry":[21],"in":[22,60,77,113,121,164,170,191,204,225,233],"multiple-reaction-monitoring":[23],"mode.":[24],"increase":[26,59,76],"from":[27,39],"50":[28],"ng":[29],"g(-1)":[30,36],"fresh":[31,37],"weight":[32,38],"to":[33,41,127,130,141,185,227],"2.9":[34],"\u00b5g":[35],"1":[40],"14":[42],"days":[43],"after":[44],"pollination":[45],"much":[47],"larger":[48],"than":[49],"that":[50,136,181,201,217],"previously":[51,229],"reported":[52],"enzyme-linked":[54],"immunoassay":[55],"methods.":[56],"largest":[58],"IAA":[61,78,88,178,189,202,218],"coincided":[63],"with":[64,83,160,177],"the":[65,68,84,106,109,153],"start":[66],"major":[69],"starch":[70,223],"deposition":[71,224],"phase":[72],"grain-fill.":[74],"strongly":[81],"correlated":[82],"expression":[85,123,211],"putative":[87],"biosynthesis":[89],"genes,":[90],"OsYUC9,":[91,214],"OsYUC11":[92,125,137,215],"and":[93,138,216],"OsTAR1,":[94,213],"quantitative":[97],"reverse":[98],"transcriptase":[99],"polymerase":[100],"chain":[101],"reaction.":[102],"These":[103],"results":[104],"confirm":[105],"importance":[107],"tryptophan":[110,168],"aminotransferase/YUCCA":[111],"pathway":[112],"this":[114,192],"system.":[115,193],"All":[116],"three":[117],"genes":[118],"were":[119],"expressed":[120],"endosperm;":[122],"appeared":[126],"be":[128,186,220],"confined":[129],"endosperm":[131],"tissue.":[132],"Phylogenetic":[133],"analysis":[134],"indicated":[135],"AtYUC10":[139],"belong":[140],"a":[142,161],"separate":[143],"clade":[144,156],"YUCCAs,":[146],"which":[147],"do":[148],"not":[149,175],"have":[150,158],"orthologues":[151],"outside":[152],"Angiosperms.":[154],"This":[155],"may":[157,219],"evolved":[159],"specific":[162],"role":[163,231],"endosperm.":[165],"Expression":[166],"decarboxylase":[169],"rice":[172,206],"did":[174],"correlate":[176],"levels,":[179],"indicating":[180],"tryptamine":[182],"is":[183,208],"unlikely":[184],"important":[187,221],"for":[188],"synthesis":[190],"In":[194],"light":[195],"these":[197],"observations,":[198],"we":[199],"hypothesize":[200],"production":[203],"controlled":[209],"via":[210],"during":[222],"addition":[226],"its":[228],"suggested":[230],"early":[232],"grain":[234],"development.":[235]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":30},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":4}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2016-06-24T00:00:00"}