{"id":"https://openalex.org/W2124574512","doi":"https://doi.org/10.1080/13693780600835716","title":"Whole genome comparison ofAspergillus flavusandA. oryzae","display_name":"Whole genome comparison ofAspergillus flavusandA. oryzae","publication_year":2006,"publication_date":"2006-01-01","ids":{"openalex":"https://openalex.org/W2124574512","doi":"https://doi.org/10.1080/13693780600835716","mag":"2124574512","pmid":"https://pubmed.ncbi.nlm.nih.gov/30408940"},"language":"it","primary_location":{"id":"doi:10.1080/13693780600835716","doi":"https://doi.org/10.1080/13693780600835716","is_oa":false,"landing_page_url":"https://doi.org/10.1080/13693780600835716","pdf_url":null,"source":{"id":"https://openalex.org/S93288122","display_name":"Medical Mycology","issn_l":"0268-1218","issn":["0268-1218","1365-280X","1369-3786","1460-2709"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-1"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Mycology","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110140998","display_name":"Gary A. Payne","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. A. Payne","raw_affiliation_strings":["Department of Plant Pathology, North Carolina State University, Raleigh, NC, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology, North Carolina State University, Raleigh, NC, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023016225","display_name":"William C. Nierman","orcid":"https://orcid.org/0000-0002-0425-9840","observed_orcids":["https://orcid.org/0000-0002-0425-9840"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"W. C. Nierman","raw_affiliation_strings":["The Institute for Genomic Research, Rockville, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, Rockville, MD, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022460492","display_name":"Jennifer Russo Wortman","orcid":"https://orcid.org/0000-0002-8713-1227","observed_orcids":["https://orcid.org/0000-0002-8713-1227"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J. R. Wortman","raw_affiliation_strings":["The Institute for Genomic Research, Rockville, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, Rockville, MD, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107849075","display_name":"Bethan Pritchard","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B. L. Pritchard","raw_affiliation_strings":["Department of Plant Pathology, North Carolina State University, Raleigh, NC, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology, North Carolina State University, Raleigh, NC, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":null,"display_name":"D. Brown","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Brown","raw_affiliation_strings":["Department of Plant Pathology, North Carolina State University, Raleigh, NC, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology, North Carolina State University, Raleigh, NC, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046369974","display_name":"Ralph A. Dean","orcid":"https://orcid.org/0000-0002-3161-3577","observed_orcids":["https://orcid.org/0000-0002-3161-3577"]},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. A. Dean","raw_affiliation_strings":["Department of Plant Pathology, North Carolina State University, Raleigh, NC, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology, North Carolina State University, Raleigh, NC, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110283224","display_name":"Deepak Bhatnagar","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I4210092201","display_name":"Southern Regional Research Center","ror":"https://ror.org/01cghcn81","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210092201","https://openalex.org/I4210122704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D Bhatnagar","raw_affiliation_strings":["USDA/ARS/SRRC, New Orleans, LA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"USDA/ARS/SRRC, New Orleans, LA, USA","institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210092201"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026426093","display_name":"Thomas E. Cleveland","orcid":"https://orcid.org/0000-0003-1992-8450","observed_orcids":["https://orcid.org/0000-0003-1992-8450"]},"institutions":[{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I4210092201","display_name":"Southern Regional Research Center","ror":"https://ror.org/01cghcn81","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210092201","https://openalex.org/I4210122704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T. E. Cleveland","raw_affiliation_strings":["USDA/ARS/SRRC, New Orleans, LA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"USDA/ARS/SRRC, New Orleans, LA, USA","institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210092201"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113839771","display_name":"Masayuki Machida","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masayuki Machida","raw_affiliation_strings":["Institute for Biological Resources and Functions, AIST, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Biological Resources and Functions, AIST, Japan","institution_ids":["https://openalex.org/I73613424"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112722083","display_name":"J. Yu","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I4210092201","display_name":"Southern Regional Research Center","ror":"https://ror.org/01cghcn81","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210092201","https://openalex.org/I4210122704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Yu","raw_affiliation_strings":["USDA/ARS/SRRC, New Orleans, LA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"USDA/ARS/SRRC, New Orleans, LA, USA","institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210092201"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4889,"currency":"USD","value_usd":4889},"apc_paid":null,"fwci":24.1702,"has_fulltext":true,"cited_by_count":268,"citation_normalized_percentile":{"value":0.99660378,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"44","issue":"s1","first_page":"9","last_page":"11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10520","display_name":"Mycotoxins in Agriculture and Food","score":0.3188000023365021,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10520","display_name":"Mycotoxins in Agriculture and Food","score":0.3188000023365021,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.2996000051498413,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.2531999945640564,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/aspergillus-flavus","display_name":"Aspergillus flavus","score":1.0},{"id":"https://openalex.org/keywords/aspergillus-oryzae","display_name":"Aspergillus oryzae","score":1.0},{"id":"https://openalex.org/keywords/whole-genome-comparison","display_name":"whole-genome comparison","score":0.7940000295639038},{"id":"https://openalex.org/keywords/aflatoxins","display_name":"aflatoxins","score":0.7400000095367432},{"id":"https://openalex.org/keywords/virulence-factors","display_name":"virulence factors","score":0.7559999823570251},{"id":"https://openalex.org/keywords/secondary-metabolism-genes","display_name":"secondary metabolism genes","score":0.8029999732971191},{"id":"https://openalex.org/keywords/polyketide-synthase","display_name":"polyketide synthase","score":0.9900000095367432},{"id":"https://openalex.org/keywords/nonribosomal-peptide-synthetase","display_name":"nonribosomal peptide synthetase","score":0.9760000109672546},{"id":"https://openalex.org/keywords/cytochrome-p450","display_name":"cytochrome P450","score":0.9639999866485596},{"id":"https://openalex.org/keywords/transposable-elements","display_name":"transposable elements","score":0.9929999709129333},{"id":"https://openalex.org/keywords/genome-size","display_name":"genome size","score":0.746999979019165},{"id":"https://openalex.org/keywords/fungal-domestication","display_name":"fungal domestication","score":0.7889999747276306},{"id":"https://openalex.org/keywords/ecotypes","display_name":"ecotypes","score":0.5879999995231628}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8710255026817322},{"id":"https://openalex.org/C2777292910","wikidata":"https://www.wikidata.org/wiki/Q137096","display_name":"Aspergillus flavus","level":2,"score":0.8442994952201843},{"id":"https://openalex.org/C2781204770","wikidata":"https://www.wikidata.org/wiki/Q22662068","display_name":"Aspergillus oryzae","level":3,"score":0.7483822703361511},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7324870228767395},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6086210608482361},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5717999935150146},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.41617250442504883},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.25556856393814087},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.08494389057159424},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1080/13693780600835716","doi":"https://doi.org/10.1080/13693780600835716","is_oa":false,"landing_page_url":"https://doi.org/10.1080/13693780600835716","pdf_url":null,"source":{"id":"https://openalex.org/S93288122","display_name":"Medical Mycology","issn_l":"0268-1218","issn":["0268-1218","1365-280X","1369-3786","1460-2709"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-1"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Mycology","raw_type":"journal-article"},{"id":"pmid:30408940","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30408940","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical mycology","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.4359000027179718}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W2000039614","https://openalex.org/W2011148511","https://openalex.org/W2019423755","https://openalex.org/W2020994501","https://openalex.org/W2035794058","https://openalex.org/W2052157934","https://openalex.org/W2113900969","https://openalex.org/W2139188434","https://openalex.org/W2162579387","https://openalex.org/W2170224877","https://openalex.org/W2405173083","https://openalex.org/W4240428553","https://openalex.org/W4252569099"],"related_works":["https://openalex.org/W7099012666","https://openalex.org/W4389258561","https://openalex.org/W3000597714","https://openalex.org/W4407263520","https://openalex.org/W7161408033","https://openalex.org/W2022176863","https://openalex.org/W4409907365","https://openalex.org/W2011148511","https://openalex.org/W2000175322","https://openalex.org/W7146370962"],"abstract_inverted_index":{"Aspergillus":[0,15,131,135],"flavus":[1,109,140],"is":[2,17,34,110],"a":[3,18],"plant":[4],"and":[5,33,71,89,100,119,134,141,197,231],"animal":[6],"pathogen":[7],"that":[8,22,60,113,222,232],"also":[9],"produces":[10],"the":[11,29,53,63,161,171,184,194,199,218,228,238],"potent":[12],"carcinogen":[13],"aflatoxin.":[14],"oryzae":[16,116,143,234],"closely":[19],"related":[20],"species":[21,196,205,230],"has":[23,206,235],"been":[24],"used":[25],"for":[26,43,107,149,176],"centuries":[27],"in":[28,77,86,147,160,190,198],"food":[30],"fermentation":[31],"industry":[32],"Generally":[35],"Regarded":[36],"As":[37],"Safe":[38],"(GRAS).":[39],"Whole":[40],"genome":[41,87,96],"sequences":[42],"these":[44,68],"two":[45,69,81,124,185,195,219],"fungi":[46,82,125,186,220],"are":[47,83,145],"now":[48],"complete,":[49],"providing":[50],"us":[51],"with":[52],"opportunity":[54],"to":[55,73,112],"examine":[56],"any":[57],"genomic":[58],"differences":[59,189],"may":[61,224],"explain":[62],"different":[64],"ecological":[65],"niches":[66],"of":[67,91,103,114,164,173,183,201,214,227,240],"fungi,":[70],"perhaps":[72],"identify":[74],"pathogenicity":[75],"factors":[76],"A.":[78,108,115,139,142,233,241],"flavus.":[79,242],"These":[80,123],"very":[84],"similar":[85,111],"size":[88,97],"number":[90,102,163,172,200],"predicted":[92,101,162],"genes.":[93,210],"The":[94,138,211],"estimated":[95],"(36\u00b78":[98],"Mb)":[99],"genes":[104,148,174],"(12":[105],"197)":[106],"(36\u00b77":[117],"Mb":[118],"12":[120],"079,":[121],"respectively).":[122],"have":[126],"significantly":[127],"larger":[128],"genomes":[129,144],"than":[130],"nidulans":[132],"(30\u00b71)":[133],"fumigatus":[136],"(29\u00b74).":[137],"enriched":[146],"secondary":[150],"metabolism,":[151],"but":[152],"do":[153],"not":[154],"differ":[155],"greatly":[156],"from":[157,237],"one":[158],"another":[159],"polyketide":[165],"synthases,":[166],"nonribosomal":[167],"peptide":[168],"synthases":[169],"or":[170],"coding":[175],"cytochrome":[177],"P450":[178],"enzymes.":[179],"A":[180],"micro-scale":[181],"analysis":[182],"did":[187],"show":[188],"DNA":[191],"correspondence":[192],"between":[193,217],"transposable":[202],"elements.":[203],"Each":[204],"approximately":[207],"350":[208],"unique":[209],"high":[212],"degree":[213],"sequence":[215],"similarity":[216],"suggests":[221],"they":[223],"be":[225],"ecotypes":[226],"same":[229],"resulted":[236],"domestication":[239]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":16},{"year":2019,"cited_by_count":17},{"year":2018,"cited_by_count":18},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":15},{"year":2013,"cited_by_count":19},{"year":2012,"cited_by_count":18}],"updated_date":"2026-10-30T12:39:25.321706","created_date":"2016-06-24T00:00:00"}
