{"id":"https://openalex.org/W2123589780","doi":"https://doi.org/10.1101/gr.170332.113","title":"Genome-wide analysis of local chromatin packing in Arabidopsis thaliana","display_name":"Genome-wide analysis of local chromatin packing in Arabidopsis thaliana","publication_year":2014,"publication_date":"2014-11-03","ids":{"openalex":"https://openalex.org/W2123589780","doi":"https://doi.org/10.1101/gr.170332.113","mag":"2123589780","pmid":"https://pubmed.ncbi.nlm.nih.gov/25367294","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/4315298"},"language":"en","primary_location":{"id":"doi:10.1101/gr.170332.113","doi":"https://doi.org/10.1101/gr.170332.113","is_oa":true,"landing_page_url":"https://doi.org/10.1101/gr.170332.113","pdf_url":"http://genome.cshlp.org/content/25/2/246.full.pdf","source":{"id":"https://openalex.org/S43092948","display_name":"Genome Research","issn_l":"1088-9051","issn":["1088-9051","1549-5469"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","doyens","jufo-3","ki-jl-2","medline","norway-2","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310315909","host_organization_name":"Cold Spring Harbor Laboratory Press","host_organization_lineage":["https://openalex.org/P4310315909"],"host_organization_lineage_names":["Cold Spring Harbor Laboratory Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Research","raw_type":"journal-article"},"volume":null,"type":"preprint","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"http://genome.cshlp.org/content/25/2/246.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016802553","display_name":"Congmao Wang","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210112458","display_name":"Max Planck Institute for Developmental Biology","ror":"https://ror.org/022jc0g24","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210112458"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Congmao Wang","raw_affiliation_strings":["Department of Molecular Biology, Max Planck Institute for\u00a0Developmental Biology, 72076 T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology, Max Planck Institute for\u00a0Developmental Biology, 72076 T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210112458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100353356","display_name":"Chang Liu","orcid":"https://orcid.org/0000-0003-2859-4288","observed_orcids":["https://orcid.org/0000-0003-2859-4288"]},"institutions":[{"id":"https://openalex.org/I4210112458","display_name":"Max Planck Institute for Developmental Biology","ror":"https://ror.org/022jc0g24","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210112458"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Chang Liu","raw_affiliation_strings":["Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 T\u00fcbingen, Germany; chang.liu@tuebingen.mpg.de weigel@weigelworld.org","1Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 T\u00fcbingen, Germany; chang.liu@tuebingen.mpg.de weigel@weigelworld.org","institution_ids":["https://openalex.org/I4210112458"]},{"raw_affiliation_string":"1Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210112458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047763166","display_name":"Damian Roqueiro","orcid":"https://orcid.org/0000-0002-9195-5915","observed_orcids":["https://orcid.org/0000-0002-9195-5915"]},"institutions":[{"id":"https://openalex.org/I4210112458","display_name":"Max Planck Institute for Developmental Biology","ror":"https://ror.org/022jc0g24","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210112458"]},{"id":"https://openalex.org/I4210135521","display_name":"Max Planck Institute for Intelligent Systems","ror":"https://ror.org/04fq9j139","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210135521"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Damian Roqueiro","raw_affiliation_strings":["Machine Learning and Computational Biology Research Group, Max Planck Institute for Developmental Biology and Max Planck Institute for Intelligent Systems, 72076 T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Machine Learning and Computational Biology Research Group, Max Planck Institute for Developmental Biology and Max Planck Institute for Intelligent Systems, 72076 T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210112458","https://openalex.org/I4210135521"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009539507","display_name":"Dominik G. Grimm","orcid":"https://orcid.org/0000-0003-2085-4591","observed_orcids":["https://orcid.org/0000-0003-2085-4591"]},"institutions":[{"id":"https://openalex.org/I4210112458","display_name":"Max Planck Institute for Developmental Biology","ror":"https://ror.org/022jc0g24","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210112458"]},{"id":"https://openalex.org/I4210135521","display_name":"Max Planck Institute for Intelligent Systems","ror":"https://ror.org/04fq9j139","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210135521"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dominik Grimm","raw_affiliation_strings":["Machine Learning and Computational Biology Research Group, Max Planck Institute for Developmental Biology and Max Planck Institute for Intelligent Systems, 72076 T\u00fcbingen, Germany","2Machine Learning and Computational Biology Research Group, Max Planck Institute for Developmental Biology and Max Planck Institute for Intelligent Systems, 72076 T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Machine Learning and Computational Biology Research Group, Max Planck Institute for Developmental Biology and Max Planck Institute for Intelligent Systems, 72076 T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210112458","https://openalex.org/I4210135521"]},{"raw_affiliation_string":"2Machine Learning and Computational Biology Research Group, Max Planck Institute for Developmental Biology and Max Planck Institute for Intelligent Systems, 72076 T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210112458","https://openalex.org/I4210135521"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083249997","display_name":"Rebecca Schwab","orcid":"https://orcid.org/0000-0001-9933-9669","observed_orcids":["https://orcid.org/0000-0001-9933-9669"]},"institutions":[{"id":"https://openalex.org/I4210112458","display_name":"Max Planck Institute for Developmental Biology","ror":"https://ror.org/022jc0g24","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210112458"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Rebecca Schwab","raw_affiliation_strings":["Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 T\u00fcbingen, Germany;","1Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 T\u00fcbingen, Germany;","institution_ids":["https://openalex.org/I4210112458"]},{"raw_affiliation_string":"1Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210112458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080926509","display_name":"Claude Becker","orcid":"https://orcid.org/0000-0003-3406-4670","observed_orcids":["https://orcid.org/0000-0003-3406-4670"]},"institutions":[{"id":"https://openalex.org/I4210112458","display_name":"Max Planck Institute for Developmental Biology","ror":"https://ror.org/022jc0g24","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210112458"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Claude Becker","raw_affiliation_strings":["Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 T\u00fcbingen, Germany;","1Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 T\u00fcbingen, Germany;","institution_ids":["https://openalex.org/I4210112458"]},{"raw_affiliation_string":"1Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210112458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007083753","display_name":"Christa Lanz","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210112458","display_name":"Max Planck Institute for Developmental Biology","ror":"https://ror.org/022jc0g24","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210112458"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christa Lanz","raw_affiliation_strings":["Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 T\u00fcbingen, Germany;","1Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 T\u00fcbingen, Germany;","institution_ids":["https://openalex.org/I4210112458"]},{"raw_affiliation_string":"1Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210112458"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003440649","display_name":"Detlef Weigel","orcid":"https://orcid.org/0000-0002-2114-7963","observed_orcids":["https://orcid.org/0000-0002-2114-7963"]},"institutions":[{"id":"https://openalex.org/I4210112458","display_name":"Max Planck Institute for Developmental Biology","ror":"https://ror.org/022jc0g24","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210112458"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Detlef Weigel","raw_affiliation_strings":["Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 T\u00fcbingen, Germany; chang.liu@tuebingen.mpg.de weigel@weigelworld.org","1Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 T\u00fcbingen, Germany; chang.liu@tuebingen.mpg.de weigel@weigelworld.org","institution_ids":["https://openalex.org/I4210112458"]},{"raw_affiliation_string":"1Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210112458"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5003440649","https://openalex.org/A5100353356"],"corresponding_institution_ids":["https://openalex.org/I4210112458"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":302,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"25","issue":"2","first_page":"246","last_page":"256"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9878000020980835,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9878000020980835,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.006800000090152025,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.000699999975040555,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/3d-genome-organization","display_name":"3D genome organization","score":0.8799999952316284},{"id":"https://openalex.org/keywords/chromatin-packing","display_name":"chromatin packing","score":0.8769999742507935},{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.949999988079071},{"id":"https://openalex.org/keywords/hi-c","display_name":"Hi-C","score":0.7089999914169312},{"id":"https://openalex.org/keywords/topologically-associated-domains","display_name":"topologically associating domains","score":0.8730000257492065},{"id":"https://openalex.org/keywords/tad-boundaries","display_name":"TAD boundaries","score":0.828000009059906},{"id":"https://openalex.org/keywords/h3k27me3","display_name":"H3K27me3","score":0.8769999742507935},{"id":"https://openalex.org/keywords/h3-1","display_name":"H3.1","score":0.8709999918937683},{"id":"https://openalex.org/keywords/histone-h3-3","display_name":"histone H3.3","score":0.9710000157356262},{"id":"https://openalex.org/keywords/epigenetic-modifications","display_name":"epigenetic modifications","score":0.8450000286102295},{"id":"https://openalex.org/keywords/gene-expression","display_name":"gene expression","score":0.8500000238418579},{"id":"https://openalex.org/keywords/gene-density","display_name":"gene density","score":0.6729999780654907},{"id":"https://openalex.org/keywords/nuclear-organization","display_name":"nuclear organization","score":0.4819999933242798}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.782105565071106},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7658785581588745},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.7377137541770935},{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.719050407409668},{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.6104076504707336},{"id":"https://openalex.org/C22322919","wikidata":"https://www.wikidata.org/wiki/Q5533501","display_name":"Genomic organization","level":4,"score":0.5422869324684143},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5267055630683899},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4975302517414093},{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.4298575222492218},{"id":"https://openalex.org/C163096569","wikidata":"https://www.wikidata.org/wiki/Q16966366","display_name":"Gene density","level":5,"score":0.4269181191921234},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41604530811309814},{"id":"https://openalex.org/C174600577","wikidata":"https://www.wikidata.org/wiki/Q5533491","display_name":"Genome evolution","level":4,"score":0.34020107984542847},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.07422631978988647}],"mesh":[{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D038101","descriptor_name":"Insulator Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D042002","descriptor_name":"Chromatin Assembly and Disassembly","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1101/gr.170332.113","doi":"https://doi.org/10.1101/gr.170332.113","is_oa":true,"landing_page_url":"https://doi.org/10.1101/gr.170332.113","pdf_url":"http://genome.cshlp.org/content/25/2/246.full.pdf","source":{"id":"https://openalex.org/S43092948","display_name":"Genome Research","issn_l":"1088-9051","issn":["1088-9051","1549-5469"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","doyens","jufo-3","ki-jl-2","medline","norway-2","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310315909","host_organization_name":"Cold Spring Harbor Laboratory Press","host_organization_lineage":["https://openalex.org/P4310315909"],"host_organization_lineage_names":["Cold Spring Harbor Laboratory Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Research","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:3285163","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4315298","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:4315298","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4315298","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Res","raw_type":"Text"},{"id":"pmid:25367294","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25367294","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome research","raw_type":"Journal Article"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1507711","doi":null,"is_oa":true,"landing_page_url":"http://mediatum.ub.tum.de/node?id=1507711","pdf_url":null,"source":{"id":"https://openalex.org/S4306400453","display_name":"mediaTUM \u2013 the media and publications repository of the Technical University Munich (Technical University Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1101/gr.170332.113","doi":"https://doi.org/10.1101/gr.170332.113","is_oa":true,"landing_page_url":"https://doi.org/10.1101/gr.170332.113","pdf_url":"http://genome.cshlp.org/content/25/2/246.full.pdf","source":{"id":"https://openalex.org/S43092948","display_name":"Genome Research","issn_l":"1088-9051","issn":["1088-9051","1549-5469"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","doyens","jufo-3","ki-jl-2","medline","norway-2","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310315909","host_organization_name":"Cold Spring Harbor Laboratory Press","host_organization_lineage":["https://openalex.org/P4310315909"],"host_organization_lineage_names":["Cold Spring Harbor Laboratory Press"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Research","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G2018199224","display_name":null,"funder_award_id":"PIIF-GA-2012-327608","funder_id":"https://openalex.org/F4320320217","funder_display_name":"Marie Curie"}],"funders":[{"id":"https://openalex.org/F4320320217","display_name":"Marie Curie","ror":"https://ror.org/02aqv1x10"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320322379","display_name":"Gottfried Wilhelm Leibniz Universit\u00e4t Hannover","ror":"https://ror.org/0304hq317"},{"id":"https://openalex.org/F4320322434","display_name":"Max-Planck-Gesellschaft","ror":"https://ror.org/01hhn8329"},{"id":"https://openalex.org/F4320334763","display_name":"Leibniz-Gemeinschaft","ror":"https://ror.org/01n6r0e97"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2123589780.pdf","grobid_xml":"https://content.openalex.org/works/W2123589780.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1522336833","https://openalex.org/W1574083126","https://openalex.org/W1851394852","https://openalex.org/W1945579058","https://openalex.org/W1964027074","https://openalex.org/W1964184081","https://openalex.org/W1968603622","https://openalex.org/W1973850324","https://openalex.org/W1980980040","https://openalex.org/W2001576815","https://openalex.org/W2017198614","https://openalex.org/W2018658338","https://openalex.org/W2019499187","https://openalex.org/W2025040226","https://openalex.org/W2031012791","https://openalex.org/W2041993671","https://openalex.org/W2042459848","https://openalex.org/W2053317015","https://openalex.org/W2056482755","https://openalex.org/W2061911398","https://openalex.org/W2065006553","https://openalex.org/W2070021921","https://openalex.org/W2070455235","https://openalex.org/W2073026107","https://openalex.org/W2074588926","https://openalex.org/W2076444968","https://openalex.org/W2081150787","https://openalex.org/W2090037139","https://openalex.org/W2091151146","https://openalex.org/W2097483331","https://openalex.org/W2097798909","https://openalex.org/W2103441770","https://openalex.org/W2105778988","https://openalex.org/W2116329736","https://openalex.org/W2124985265","https://openalex.org/W2130888090","https://openalex.org/W2133766443","https://openalex.org/W2142888030","https://openalex.org/W2146547152","https://openalex.org/W2146648681","https://openalex.org/W2149485133","https://openalex.org/W2152605077","https://openalex.org/W2154431984","https://openalex.org/W2156447791","https://openalex.org/W2157576490","https://openalex.org/W2162787150","https://openalex.org/W2162921898","https://openalex.org/W2164087442","https://openalex.org/W2167284537","https://openalex.org/W7073747161"],"related_works":["https://openalex.org/W2397143686","https://openalex.org/W2747655851","https://openalex.org/W1980980040","https://openalex.org/W2801885583","https://openalex.org/W2552593393","https://openalex.org/W3008883190","https://openalex.org/W4396588602","https://openalex.org/W3118614725","https://openalex.org/W3006782472","https://openalex.org/W2625207873"],"abstract_inverted_index":{"The":[0,22,165],"spatial":[1],"arrangement":[2],"of":[3,42,47,84,100,136,150,157,163,203],"interphase":[4],"chromosomes":[5],"in":[6,17,20,63,87,105,129],"the":[7,43,48,60,161,200,204],"nucleus":[8],"is":[9,27],"important":[10],"for":[11,174],"gene":[12,184,192],"expression":[13,185],"and":[14,19,110,153,168,178,194],"genome":[15,33,45,85,139],"function":[16],"animals":[18],"plants.":[21],"recently":[23],"developed":[24],"Hi-C":[25,40],"technology":[26],"an":[28,133],"efficacious":[29],"method":[30],"to":[31,160,198],"investigate":[32],"packing.":[34],"Here":[35],"we":[36,141],"present":[37],"a":[38,79,154],"detailed":[39],"map":[41],"three-dimensional":[44],"organization":[46],"plant":[49],"Arabidopsis":[50],"thaliana.":[51,89],"We":[52,112,187],"find":[53],"that":[54,68,147,189],"local":[55,81,201],"chromatin":[56,101],"packing":[57,202],"differs":[58],"from":[59],"patterns":[61],"seen":[62],"animals,":[64,130],"with":[65,182],"kilobasepair-sized":[66],"segments":[67],"have":[69,148],"much":[70],"higher":[71],"intrachromosome":[72],"interaction":[73],"rates":[74],"than":[75,116,144],"neighboring":[76],"regions,":[77,91],"representing":[78],"dominant":[80],"structural":[82],"feature":[83,135],"conformation":[86],"A.":[88,137,205],"These":[90],"which":[92,126],"appear":[93],"as":[94],"positive":[95],"strips":[96],"on":[97],"two-dimensional":[98],"representations":[99],"interaction,":[102],"are":[103,127,131,171,179],"enriched":[104,173],"epigenetic":[106,176,190],"marks":[107,177],"H3K27me3,":[108],"H3.1,":[109],"H3.3.":[111],"also":[113],"identify":[114],"more":[115,143],"400":[117],"insulator-like":[118],"regions.":[119],"Furthermore,":[120],"although":[121],"topologically":[122],"associating":[123],"domains":[124],"(TADs),":[125],"prominent":[128],"not":[132],"obvious":[134],"thaliana":[138,206],"packing,":[140],"found":[142],"1000":[145],"regions":[146,158,170],"properties":[149],"TAD":[151],"boundaries,":[152],"similar":[155],"number":[156],"analogous":[159],"interior":[162],"TADs.":[164],"insulator-like,":[166],"TAD-boundary-like,":[167],"TAD-interior-like":[169],"each":[172,180],"distinct":[175],"correlated":[181],"different":[183],"levels.":[186],"conclude":[188],"modifications,":[191],"density,":[193],"transcriptional":[195],"activity":[196],"combine":[197],"shape":[199],"nuclear":[207],"genome.":[208]},"counts_by_year":[{"year":2026,"cited_by_count":17},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":26},{"year":2023,"cited_by_count":20},{"year":2022,"cited_by_count":31},{"year":2021,"cited_by_count":40},{"year":2020,"cited_by_count":38},{"year":2019,"cited_by_count":29},{"year":2018,"cited_by_count":26},{"year":2017,"cited_by_count":29},{"year":2016,"cited_by_count":19},{"year":2015,"cited_by_count":18}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2016-06-24T00:00:00"}