{"id":"https://openalex.org/W2118307652","doi":"https://doi.org/10.1186/1757-4749-4-5","title":"Effects of indole on drug resistance and virulence of Salmonella enterica serovar Typhimurium revealed by genome-wide analyses","display_name":"Effects of indole on drug resistance and virulence of Salmonella enterica serovar Typhimurium revealed by genome-wide analyses","publication_year":2012,"publication_date":"2012-05-25","ids":{"openalex":"https://openalex.org/W2118307652","doi":"https://doi.org/10.1186/1757-4749-4-5","mag":"2118307652","pmid":"https://pubmed.ncbi.nlm.nih.gov/22632036","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/3405474"},"language":"en","primary_location":{"id":"doi:10.1186/1757-4749-4-5","doi":"https://doi.org/10.1186/1757-4749-4-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1757-4749-4-5","pdf_url":"https://gutpathogens.biomedcentral.com/counter/pdf/10.1186/1757-4749-4-5","source":{"id":"https://openalex.org/S116933238","display_name":"Gut Pathogens","issn_l":"1757-4749","issn":["1757-4749"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","norway-1","oarl","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Gut Pathogens","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://gutpathogens.biomedcentral.com/counter/pdf/10.1186/1757-4749-4-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025471073","display_name":"Eiji Nikaido","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4405287424","display_name":"The Institute of Scientific and Industrial Research, The University of Osaka","ror":"https://ror.org/053t3hh85","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4405287424","https://openalex.org/I98285908"]},{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Eiji Nikaido","raw_affiliation_strings":["Department of Cell Membrane Biology, Institute of Scientific and Industrial Research, Osaka University, Ibaraki, Osaka, Japan","Graduate School of Pharmaceutical Sciences, Osaka University, Suita, Osaka, Japan","Laboratory of Microbiology and Infectious Diseases, Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-00447, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cell Membrane Biology, Institute of Scientific and Industrial Research, Osaka University, Ibaraki, Osaka, Japan","institution_ids":["https://openalex.org/I4405287424","https://openalex.org/I98285908"]},{"raw_affiliation_string":"Graduate School of Pharmaceutical Sciences, Osaka University, Suita, Osaka, Japan","institution_ids":["https://openalex.org/I98285908"]},{"raw_affiliation_string":"Laboratory of Microbiology and Infectious Diseases, Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-00447, Japan","institution_ids":["https://openalex.org/I4405287424","https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038581069","display_name":"\u00c9tienne Giraud","orcid":"https://orcid.org/0000-0002-2534-4040","observed_orcids":["https://orcid.org/0000-0002-2534-4040"]},"institutions":[{"id":"https://openalex.org/I110017253","display_name":"Universit\u00e9 de Tours","ror":"https://ror.org/02wwzvj46","country_code":"FR","type":"education","lineage":["https://openalex.org/I110017253"]},{"id":"https://openalex.org/I4210147048","display_name":"Infectiologie et sant\u00e9 publique","ror":"https://ror.org/0454zjr22","country_code":"FR","type":"facility","lineage":["https://openalex.org/I110017253","https://openalex.org/I4210088668","https://openalex.org/I4210147048"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Etienne Giraud","raw_affiliation_strings":["INRA, UMR1282 Infectiologie et Sant\u00e9 Publique, F-37380, Nouzilly, France","Universit\u00e9 Fran\u00e7ois Rabelais de Tours, UMR1282 Infectiologie et Sant\u00e9 Publique, F-37000, Tours, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRA, UMR1282 Infectiologie et Sant\u00e9 Publique, F-37380, Nouzilly, France","institution_ids":["https://openalex.org/I4210147048"]},{"raw_affiliation_string":"Universit\u00e9 Fran\u00e7ois Rabelais de Tours, UMR1282 Infectiologie et Sant\u00e9 Publique, F-37000, Tours, France","institution_ids":["https://openalex.org/I110017253","https://openalex.org/I4210147048"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048553626","display_name":"Sylvie Baucheron","orcid":"https://orcid.org/0000-0002-5780-569X","observed_orcids":["https://orcid.org/0000-0002-5780-569X"]},"institutions":[{"id":"https://openalex.org/I110017253","display_name":"Universit\u00e9 de Tours","ror":"https://ror.org/02wwzvj46","country_code":"FR","type":"education","lineage":["https://openalex.org/I110017253"]},{"id":"https://openalex.org/I4210147048","display_name":"Infectiologie et sant\u00e9 publique","ror":"https://ror.org/0454zjr22","country_code":"FR","type":"facility","lineage":["https://openalex.org/I110017253","https://openalex.org/I4210088668","https://openalex.org/I4210147048"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sylvie Baucheron","raw_affiliation_strings":["INRA, UMR1282 Infectiologie et Sant\u00e9 Publique, F-37380, Nouzilly, France","Universit\u00e9 Fran\u00e7ois Rabelais de Tours, UMR1282 Infectiologie et Sant\u00e9 Publique, F-37000, Tours, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRA, UMR1282 Infectiologie et Sant\u00e9 Publique, F-37380, Nouzilly, France","institution_ids":["https://openalex.org/I4210147048"]},{"raw_affiliation_string":"Universit\u00e9 Fran\u00e7ois Rabelais de Tours, UMR1282 Infectiologie et Sant\u00e9 Publique, F-37000, Tours, France","institution_ids":["https://openalex.org/I110017253","https://openalex.org/I4210147048"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089369332","display_name":"Suguru Yamasaki","orcid":"https://orcid.org/0000-0003-3370-5851","observed_orcids":["https://orcid.org/0000-0003-3370-5851"]},"institutions":[{"id":"https://openalex.org/I4405287424","display_name":"The Institute of Scientific and Industrial Research, The University of Osaka","ror":"https://ror.org/053t3hh85","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4405287424","https://openalex.org/I98285908"]},{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Suguru Yamasaki","raw_affiliation_strings":["Department of Cell Membrane Biology, Institute of Scientific and Industrial Research, Osaka University, Ibaraki, Osaka, Japan","Graduate School of Pharmaceutical Sciences, Osaka University, Suita, Osaka, Japan","Laboratory of Microbiology and Infectious Diseases, Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-00447, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cell Membrane Biology, Institute of Scientific and Industrial Research, Osaka University, Ibaraki, Osaka, Japan","institution_ids":["https://openalex.org/I4405287424","https://openalex.org/I98285908"]},{"raw_affiliation_string":"Graduate School of Pharmaceutical Sciences, Osaka University, Suita, Osaka, Japan","institution_ids":["https://openalex.org/I98285908"]},{"raw_affiliation_string":"Laboratory of Microbiology and Infectious Diseases, Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-00447, Japan","institution_ids":["https://openalex.org/I4405287424","https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009456121","display_name":"Agn\u00e8s Wiedemann","orcid":"https://orcid.org/0000-0002-9947-5510","observed_orcids":["https://orcid.org/0000-0002-9947-5510","https://orcid.org/0000-0001-8237-3545"]},"institutions":[{"id":"https://openalex.org/I110017253","display_name":"Universit\u00e9 de Tours","ror":"https://ror.org/02wwzvj46","country_code":"FR","type":"education","lineage":["https://openalex.org/I110017253"]},{"id":"https://openalex.org/I4210147048","display_name":"Infectiologie et sant\u00e9 publique","ror":"https://ror.org/0454zjr22","country_code":"FR","type":"facility","lineage":["https://openalex.org/I110017253","https://openalex.org/I4210088668","https://openalex.org/I4210147048"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Agn\u00e8s Wiedemann","raw_affiliation_strings":["INRA, UMR1282 Infectiologie et Sant\u00e9 Publique, F-37380, Nouzilly, France","Universit\u00e9 Fran\u00e7ois Rabelais de Tours, UMR1282 Infectiologie et Sant\u00e9 Publique, F-37000, Tours, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRA, UMR1282 Infectiologie et Sant\u00e9 Publique, F-37380, Nouzilly, France","institution_ids":["https://openalex.org/I4210147048"]},{"raw_affiliation_string":"Universit\u00e9 Fran\u00e7ois Rabelais de Tours, UMR1282 Infectiologie et Sant\u00e9 Publique, F-37000, Tours, France","institution_ids":["https://openalex.org/I110017253","https://openalex.org/I4210147048"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113586192","display_name":"Kousuke Okamoto","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kousuke Okamoto","raw_affiliation_strings":["Graduate School of Pharmaceutical Sciences, Osaka University, Suita, Osaka, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School of Pharmaceutical Sciences, Osaka University, Suita, Osaka, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037676006","display_name":"Tatsuya Takagi","orcid":"https://orcid.org/0000-0002-0044-0722","observed_orcids":["https://orcid.org/0000-0002-0044-0722","https://orcid.org/0000-0002-9345-9544"]},"institutions":[{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tatsuya Takagi","raw_affiliation_strings":["Graduate School of Pharmaceutical Sciences, Osaka University, Suita, Osaka, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School of Pharmaceutical Sciences, Osaka University, Suita, Osaka, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052384578","display_name":"Akihito Yamaguchi","orcid":"https://orcid.org/0000-0001-8083-7609","observed_orcids":["https://orcid.org/0000-0001-8083-7609"]},"institutions":[{"id":"https://openalex.org/I4405287424","display_name":"The Institute of Scientific and Industrial Research, The University of Osaka","ror":"https://ror.org/053t3hh85","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4405287424","https://openalex.org/I98285908"]},{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Akihito Yamaguchi","raw_affiliation_strings":["Department of Cell Membrane Biology, Institute of Scientific and Industrial Research, Osaka University, Ibaraki, Osaka, Japan","Graduate School of Pharmaceutical Sciences, Osaka University, Suita, Osaka, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cell Membrane Biology, Institute of Scientific and Industrial Research, Osaka University, Ibaraki, Osaka, Japan","institution_ids":["https://openalex.org/I4405287424","https://openalex.org/I98285908"]},{"raw_affiliation_string":"Graduate School of Pharmaceutical Sciences, Osaka University, Suita, Osaka, Japan","institution_ids":["https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082494281","display_name":"Axel Cloeckaert","orcid":"https://orcid.org/0000-0002-5887-7599","observed_orcids":["https://orcid.org/0000-0002-5887-7599"]},"institutions":[{"id":"https://openalex.org/I110017253","display_name":"Universit\u00e9 de Tours","ror":"https://ror.org/02wwzvj46","country_code":"FR","type":"education","lineage":["https://openalex.org/I110017253"]},{"id":"https://openalex.org/I4210147048","display_name":"Infectiologie et sant\u00e9 publique","ror":"https://ror.org/0454zjr22","country_code":"FR","type":"facility","lineage":["https://openalex.org/I110017253","https://openalex.org/I4210088668","https://openalex.org/I4210147048"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Axel Cloeckaert","raw_affiliation_strings":["INRA, UMR1282 Infectiologie et Sant\u00e9 Publique, F-37380, Nouzilly, France","Universit\u00e9 Fran\u00e7ois Rabelais de Tours, UMR1282 Infectiologie et Sant\u00e9 Publique, F-37000, Tours, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRA, UMR1282 Infectiologie et Sant\u00e9 Publique, F-37380, Nouzilly, France","institution_ids":["https://openalex.org/I4210147048"]},{"raw_affiliation_string":"Universit\u00e9 Fran\u00e7ois Rabelais de Tours, UMR1282 Infectiologie et Sant\u00e9 Publique, F-37000, Tours, France","institution_ids":["https://openalex.org/I110017253","https://openalex.org/I4210147048"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001173964","display_name":"Kunihiko Nishino","orcid":"https://orcid.org/0000-0003-3349-1769","observed_orcids":["https://orcid.org/0000-0003-3349-1769"]},"institutions":[{"id":"https://openalex.org/I4405287424","display_name":"The Institute of Scientific and Industrial Research, The University of Osaka","ror":"https://ror.org/053t3hh85","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4405287424","https://openalex.org/I98285908"]},{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Kunihiko Nishino","raw_affiliation_strings":["Laboratory of Microbiology and Infectious Diseases, Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-00447, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Microbiology and Infectious Diseases, Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-00447, Japan","institution_ids":["https://openalex.org/I4405287424","https://openalex.org/I98285908"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5001173964","https://openalex.org/A5082494281"],"corresponding_institution_ids":["https://openalex.org/I110017253","https://openalex.org/I4210147048","https://openalex.org/I4405287424","https://openalex.org/I98285908"],"apc_list":{"value":3390,"currency":"USD","value_usd":3390},"apc_paid":{"value":3390,"currency":"USD","value_usd":3390},"fwci":2.6413,"has_fulltext":true,"cited_by_count":119,"citation_normalized_percentile":{"value":0.90867931,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":100},"biblio":{"volume":"4","issue":"1","first_page":"5","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.8012999892234802,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.8012999892234802,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10486","display_name":"Salmonella and Campylobacter epidemiology","score":0.07670000195503235,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.054099999368190765,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/indole","display_name":"indole","score":0.9570000171661377},{"id":"https://openalex.org/keywords/salmonella-typhimurium","display_name":"Salmonella typhimurium","score":0.9879999756813049},{"id":"https://openalex.org/keywords/multidrug-resistance","display_name":"multidrug resistance","score":0.8370000123977661},{"id":"https://openalex.org/keywords/virulence","display_name":"virulence","score":0.753000020980835},{"id":"https://openalex.org/keywords/interspecies-communication","display_name":"interspecies communication","score":0.7870000004768372},{"id":"https://openalex.org/keywords/quorum-sensing","display_name":"quorum sensing","score":0.7129999995231628},{"id":"https://openalex.org/keywords/acrab-efflux-pump","display_name":"AcrAB efflux pump","score":0.7630000114440918},{"id":"https://openalex.org/keywords/rama","display_name":"Rama","score":0.8980000019073486},{"id":"https://openalex.org/keywords/salmonella-pathogenicity-island-1","display_name":"Salmonella pathogenicity island 1","score":0.9449999928474426},{"id":"https://openalex.org/keywords/host-cell-invasion","display_name":"host cell invasion","score":0.8899999856948853},{"id":"https://openalex.org/keywords/bacterial-motility","display_name":"bacterial motility","score":0.843999981880188},{"id":"https://openalex.org/keywords/gene-expression-regulation","display_name":"gene expression regulation","score":0.7580000162124634},{"id":"https://openalex.org/keywords/tnaa","display_name":"tnaA","score":0.7609999775886536}],"concepts":[{"id":"https://openalex.org/C2779607309","wikidata":"https://www.wikidata.org/wiki/Q2264864","display_name":"Salmonella enterica","level":4,"score":0.9343953132629395},{"id":"https://openalex.org/C192527728","wikidata":"https://www.wikidata.org/wiki/Q1465700","display_name":"Indole test","level":2,"score":0.8799554109573364},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.7652075290679932},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7212940454483032},{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.718336284160614},{"id":"https://openalex.org/C2781065037","wikidata":"https://www.wikidata.org/wiki/Q150839","display_name":"Salmonella","level":3,"score":0.6972379684448242},{"id":"https://openalex.org/C62130838","wikidata":"https://www.wikidata.org/wiki/Q5196163","display_name":"Pathogenicity island","level":4,"score":0.5833009481430054},{"id":"https://openalex.org/C133936738","wikidata":"https://www.wikidata.org/wiki/Q643839","display_name":"Multiple drug resistance","level":3,"score":0.5099550485610962},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.47943586111068726},{"id":"https://openalex.org/C200082930","wikidata":"https://www.wikidata.org/wiki/Q22327148","display_name":"Efflux","level":2,"score":0.4718071520328522},{"id":"https://openalex.org/C58123911","wikidata":"https://www.wikidata.org/wiki/Q467410","display_name":"Biofilm","level":3,"score":0.4677906930446625},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.44363972544670105},{"id":"https://openalex.org/C115811362","wikidata":"https://www.wikidata.org/wiki/Q189998","display_name":"Flagellum","level":3,"score":0.414294958114624},{"id":"https://openalex.org/C114851261","wikidata":"https://www.wikidata.org/wiki/Q12147416","display_name":"Drug resistance","level":2,"score":0.40081876516342163},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.373786985874176},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27599766850471497},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.12364774942398071}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1186/1757-4749-4-5","doi":"https://doi.org/10.1186/1757-4749-4-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1757-4749-4-5","pdf_url":"https://gutpathogens.biomedcentral.com/counter/pdf/10.1186/1757-4749-4-5","source":{"id":"https://openalex.org/S116933238","display_name":"Gut Pathogens","issn_l":"1757-4749","issn":["1757-4749"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","norway-1","oarl","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Gut Pathogens","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2408898","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3405474","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3405474","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3405474","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Gut Pathog","raw_type":"Text"},{"id":"pmid:22632036","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22632036","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Gut pathogens","raw_type":"Journal Article"},{"id":"pmh:oai:HAL:hal-02650888v1","doi":null,"is_oa":true,"landing_page_url":"https://hal.inrae.fr/hal-02650888","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4405252976","host_organization_name":"Centre pour la Communication Scientifique Directe","host_organization_lineage":["https://openalex.org/I4405252976"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.gutpathogens.com/","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:b0cd9152006e40d686194f0b3568ad3e","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/b0cd9152006e40d686194f0b3568ad3e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Gut Pathogens, Vol 4, Iss 1, p 5 (2012)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1757-4749-4-5","doi":"https://doi.org/10.1186/1757-4749-4-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1757-4749-4-5","pdf_url":"https://gutpathogens.biomedcentral.com/counter/pdf/10.1186/1757-4749-4-5","source":{"id":"https://openalex.org/S116933238","display_name":"Gut Pathogens","issn_l":"1757-4749","issn":["1757-4749"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","norway-1","oarl","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Gut Pathogens","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.5683000087738037}],"study_designs":[],"awards":[{"id":"https://openalex.org/G7309733369","display_name":null,"funder_award_id":"1634-32245","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"},{"id":"https://openalex.org/F4320324144","display_name":"National Institute of Biomedical Innovation","ror":"https://ror.org/001rkbe13"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2118307652.pdf","grobid_xml":"https://content.openalex.org/works/W2118307652.grobid-xml"},"referenced_works_count":68,"referenced_works":["https://openalex.org/W110302458","https://openalex.org/W142836859","https://openalex.org/W191752848","https://openalex.org/W302512641","https://openalex.org/W1546783991","https://openalex.org/W1547922007","https://openalex.org/W1553185642","https://openalex.org/W1837334211","https://openalex.org/W1895819679","https://openalex.org/W1921873814","https://openalex.org/W1925458372","https://openalex.org/W1926686649","https://openalex.org/W1938034723","https://openalex.org/W1943112463","https://openalex.org/W1970582294","https://openalex.org/W1977105094","https://openalex.org/W1977553831","https://openalex.org/W1979637561","https://openalex.org/W1984171637","https://openalex.org/W1989238773","https://openalex.org/W1989261175","https://openalex.org/W1991323950","https://openalex.org/W1991963156","https://openalex.org/W1992144107","https://openalex.org/W2005327412","https://openalex.org/W2009715278","https://openalex.org/W2009922987","https://openalex.org/W2013940605","https://openalex.org/W2026658658","https://openalex.org/W2032159725","https://openalex.org/W2032520208","https://openalex.org/W2035782757","https://openalex.org/W2036080658","https://openalex.org/W2042544884","https://openalex.org/W2043864667","https://openalex.org/W2044697909","https://openalex.org/W2044848994","https://openalex.org/W2046131957","https://openalex.org/W2048767131","https://openalex.org/W2054729019","https://openalex.org/W2061579546","https://openalex.org/W2062154991","https://openalex.org/W2064612941","https://openalex.org/W2067121745","https://openalex.org/W2076233570","https://openalex.org/W2076384130","https://openalex.org/W2079698171","https://openalex.org/W2081929574","https://openalex.org/W2086934897","https://openalex.org/W2090381756","https://openalex.org/W2092550686","https://openalex.org/W2098626852","https://openalex.org/W2106975426","https://openalex.org/W2110412791","https://openalex.org/W2113177287","https://openalex.org/W2113621708","https://openalex.org/W2114047144","https://openalex.org/W2116137883","https://openalex.org/W2125625634","https://openalex.org/W2126661550","https://openalex.org/W2133972092","https://openalex.org/W2137164070","https://openalex.org/W2138017756","https://openalex.org/W2138641632","https://openalex.org/W2149332722","https://openalex.org/W2150013876","https://openalex.org/W2167637231","https://openalex.org/W2172097617"],"related_works":["https://openalex.org/W2012203449","https://openalex.org/W2889237146","https://openalex.org/W2784164631","https://openalex.org/W2082541318","https://openalex.org/W2124203541","https://openalex.org/W1989238773","https://openalex.org/W1984171637","https://openalex.org/W7212355896","https://openalex.org/W2743654847","https://openalex.org/W1993810129"],"abstract_inverted_index":{"BACKGROUND:":[0],"Many":[1],"Gram-positive":[2],"and":[3,64,153,155,170,177,205],"Gram-negative":[4],"bacteria":[5],"produce":[6,40],"large":[7],"quantities":[8],"of":[9,68,86,100,110,144,174,179,207],"indole":[10,41,65,87,129,182,192],"as":[11,27],"an":[12,28,194],"intercellular":[13],"signal":[14],"in":[15,24,74,90,112,138,164],"microbial":[16],"communities.":[17],"Indole":[18,141],"demonstrated":[19,59],"to":[20,34,147,159,201],"affect":[21],"gene":[22],"expression":[23,67,143],"Escherichia":[25],"coli":[26],"intra-species":[29],"signaling":[30,196],"molecule.":[31],"In":[32],"contrast":[33],"E.":[35,61],"coli,":[36],"Salmonella":[37,75,91,125,166,180],"does":[38,44],"not":[39,45],"because":[42],"it":[43],"harbor":[46],"tnaA,":[47],"which":[48],"encodes":[49],"the":[50,69,83,97,113,132,165],"enzyme":[51],"responsible":[52],"for":[53,79,198],"tryptophan":[54],"metabolism.":[55],"Our":[56,188],"previous":[57],"study":[58],"that":[60,191],"coli-conditioned":[62],"medium":[63],"induce":[66],"AcrAB":[70],"multidrug":[71,149],"efflux":[72],"pump":[73],"enterica":[76,115],"serovar":[77,116],"Typhimurium":[78,117],"inter-species":[80,199],"communication;":[81],"however,":[82],"global":[84],"effect":[85],"on":[88,131],"genes":[89,101,111,145],"remains":[92],"unknown.":[93],"RESULTS:":[94],"To":[95],"understand":[96],"complete":[98],"picture":[99],"regulated":[102],"by":[103,122,128,181],"indole,":[104],"we":[105],"performed":[106],"DNA":[107],"microarray":[108,133],"analysis":[109],"S.":[114,208],"strain":[118],"ATCC":[119],"14028s":[120],"affected":[121,127],"indole.":[123],"Predicted":[124],"phenotypes":[126],"based":[130],"data":[134],"were":[135],"also":[136,184],"examined":[137],"this":[139],"study.":[140],"induced":[142],"related":[146,158],"efflux-mediated":[148],"resistance,":[150],"including":[151],"ramA":[152],"acrAB,":[154],"repressed":[156],"those":[157],"host":[160],"cell":[161],"invasion":[162],"encoded":[163],"pathogenicity":[167],"island":[168],"1,":[169],"flagella":[171],"production.":[172],"Reduction":[173],"invasive":[175],"activity":[176],"motility":[178],"was":[183],"observed":[185],"phenotypically.":[186],"CONCLUSION:":[187],"results":[189],"suggest":[190],"is":[193],"important":[195],"molecule":[197],"communication":[200],"control":[202],"drug":[203],"resistance":[204],"virulence":[206],"enterica.":[209]},"counts_by_year":[{"year":2026,"cited_by_count":14},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":17},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":1}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2016-06-24T00:00:00"}