{"id":"https://openalex.org/W2116018449","doi":"https://doi.org/10.1371/journal.ppat.1003349","title":"Yersinia pestis DNA from Skeletal Remains from the 6th Century AD Reveals Insights into Justinianic Plague","display_name":"Yersinia pestis DNA from Skeletal Remains from the 6th Century AD Reveals Insights into Justinianic Plague","publication_year":2013,"publication_date":"2013-05-02","ids":{"openalex":"https://openalex.org/W2116018449","doi":"https://doi.org/10.1371/journal.ppat.1003349","mag":"2116018449","pmid":"https://pubmed.ncbi.nlm.nih.gov/23658525","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/3642051"},"language":"en","primary_location":{"id":"doi:10.1371/journal.ppat.1003349","doi":"https://doi.org/10.1371/journal.ppat.1003349","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.ppat.1003349","pdf_url":null,"source":{"id":"https://openalex.org/S2004986","display_name":"PLoS Pathogens","issn_l":"1553-7366","issn":["1553-7366","1553-7374"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Pathogens","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.ppat.1003349","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011056940","display_name":"Michaela Harbeck","orcid":"https://orcid.org/0000-0001-8419-3775","observed_orcids":["https://orcid.org/0000-0001-8419-3775"]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Michaela Harbeck","raw_affiliation_strings":["State Collection for Anthropology and Palaeoanatomy, Munich, Germany. M.Harbeck@lrz.uni-muenchen.de","State Collection for Anthropology and Palaeoanatomy, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Collection for Anthropology and Palaeoanatomy, Munich, Germany. M.Harbeck@lrz.uni-muenchen.de","institution_ids":[]},{"raw_affiliation_string":"State Collection for Anthropology and Palaeoanatomy, Munich, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022828801","display_name":"Lisa Seifert","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lisa Seifert","raw_affiliation_strings":["Department Biology I, Anthropology and Human Genetics, Ludwig Maximilian University of Munich, Martinsried, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department Biology I, Anthropology and Human Genetics, Ludwig Maximilian University of Munich, Martinsried, Germany","institution_ids":["https://openalex.org/I8204097"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058693538","display_name":"Stephanie H\u00e4nsch","orcid":"https://orcid.org/0000-0001-7629-5886","observed_orcids":["https://orcid.org/0000-0001-7629-5886"]},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]},{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE","NO"],"is_corresponding":false,"raw_author_name":"Stephanie H\u00e4nsch","raw_affiliation_strings":["Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway","Institute for Anthropology, Johannes Gutenberg University, Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Institute for Anthropology, Johannes Gutenberg University, Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080099109","display_name":"David M. Wagner","orcid":"https://orcid.org/0000-0003-2684-6007","observed_orcids":["https://orcid.org/0000-0003-2684-6007"]},"institutions":[{"id":"https://openalex.org/I203172682","display_name":"Northern Arizona University","ror":"https://ror.org/0272j5188","country_code":"US","type":"education","lineage":["https://openalex.org/I203172682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David M. Wagner","raw_affiliation_strings":["Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, United States of America","institution_ids":["https://openalex.org/I203172682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089723232","display_name":"Dawn N. Birdsell","orcid":"https://orcid.org/0000-0003-0055-9552","observed_orcids":["https://orcid.org/0000-0003-0055-9552"]},"institutions":[{"id":"https://openalex.org/I203172682","display_name":"Northern Arizona University","ror":"https://ror.org/0272j5188","country_code":"US","type":"education","lineage":["https://openalex.org/I203172682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dawn Birdsell","raw_affiliation_strings":["Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, United States of America","institution_ids":["https://openalex.org/I203172682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065044143","display_name":"Katy L. Parise","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I203172682","display_name":"Northern Arizona University","ror":"https://ror.org/0272j5188","country_code":"US","type":"education","lineage":["https://openalex.org/I203172682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Katy L. Parise","raw_affiliation_strings":["Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Microbial Genetics and Genomics, Northern Arizona University, Flagstaff, Arizona, United States of America","institution_ids":["https://openalex.org/I203172682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055835162","display_name":"Ingrid Wiechmann","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ingrid Wiechmann","raw_affiliation_strings":["Institute of Palaeoanatomy, Domestication Research and the History of Veterinary Medicine, Department of Veterinary Sciences, Ludwig Maximilian University of Munich, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Palaeoanatomy, Domestication Research and the History of Veterinary Medicine, Department of Veterinary Sciences, Ludwig Maximilian University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I8204097"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057542074","display_name":"Gisela Grupe","orcid":"https://orcid.org/0000-0002-2731-2296","observed_orcids":["https://orcid.org/0000-0002-2731-2296"]},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gisela Grupe","raw_affiliation_strings":["Department Biology I, Anthropology and Human Genetics, Ludwig Maximilian University of Munich, Martinsried, Germany","State Collection for Anthropology and Palaeoanatomy, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department Biology I, Anthropology and Human Genetics, Ludwig Maximilian University of Munich, Martinsried, Germany","institution_ids":["https://openalex.org/I8204097"]},{"raw_affiliation_string":"State Collection for Anthropology and Palaeoanatomy, Munich, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108765249","display_name":"Astrid Thomas","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4403928284","display_name":"Institut f\u00fcr Mikrobiologie der Bundeswehr","ror":"https://ror.org/01xexwj76","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4387152969","https://openalex.org/I4403928284"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Astrid Thomas","raw_affiliation_strings":["Bundeswehr Institute of Microbiology, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bundeswehr Institute of Microbiology, Munich, Germany","institution_ids":["https://openalex.org/I4403928284"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045601734","display_name":"Paul Keim","orcid":"https://orcid.org/0000-0003-0089-5820","observed_orcids":["https://orcid.org/0000-0003-0089-5820"]},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Paul Keim","raw_affiliation_strings":["Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052782662","display_name":"Lothar G. Z\u00f6ller","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4403928284","display_name":"Institut f\u00fcr Mikrobiologie der Bundeswehr","ror":"https://ror.org/01xexwj76","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4387152969","https://openalex.org/I4403928284"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lothar Z\u00f6ller","raw_affiliation_strings":["Bundeswehr Institute of Microbiology, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bundeswehr Institute of Microbiology, Munich, Germany","institution_ids":["https://openalex.org/I4403928284"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080279246","display_name":"Barbara Bramanti","orcid":"https://orcid.org/0000-0002-5433-663X","observed_orcids":["https://orcid.org/0000-0002-5433-663X"]},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]},{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE","NO"],"is_corresponding":true,"raw_author_name":"Barbara Bramanti","raw_affiliation_strings":["Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway","Institute for Anthropology, Johannes Gutenberg University, Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Institute for Anthropology, Johannes Gutenberg University, Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058209768","display_name":"Julia M. Riehm","orcid":"https://orcid.org/0000-0002-0767-5217","observed_orcids":["https://orcid.org/0000-0002-0767-5217"]},"institutions":[{"id":"https://openalex.org/I4403928284","display_name":"Institut f\u00fcr Mikrobiologie der Bundeswehr","ror":"https://ror.org/01xexwj76","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4387152969","https://openalex.org/I4403928284"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Julia M. Riehm","raw_affiliation_strings":["Bundeswehr Institute of Microbiology, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bundeswehr Institute of Microbiology, Munich, Germany","institution_ids":["https://openalex.org/I4403928284"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007765390","display_name":"Holger Christian Scholz","orcid":"https://orcid.org/0000-0001-7224-0458","observed_orcids":["https://orcid.org/0000-0001-7224-0458"]},"institutions":[{"id":"https://openalex.org/I4403928284","display_name":"Institut f\u00fcr Mikrobiologie der Bundeswehr","ror":"https://ror.org/01xexwj76","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4387152969","https://openalex.org/I4403928284"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Holger C. Scholz","raw_affiliation_strings":["Bundeswehr Institute of Microbiology, Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bundeswehr Institute of Microbiology, Munich, Germany","institution_ids":["https://openalex.org/I4403928284"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5007765390","https://openalex.org/A5011056940","https://openalex.org/A5080279246"],"corresponding_institution_ids":["https://openalex.org/I184942183","https://openalex.org/I197323543","https://openalex.org/I4403928284"],"apc_list":{"value":3043,"currency":"USD","value_usd":3043},"apc_paid":{"value":3043,"currency":"USD","value_usd":3043},"fwci":18.4298,"has_fulltext":true,"cited_by_count":280,"citation_normalized_percentile":{"value":0.99643507,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"9","issue":"5","first_page":"e1003349","last_page":"e1003349"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12232","display_name":"Yersinia bacterium, plague, ectoparasites research","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12232","display_name":"Yersinia bacterium, plague, ectoparasites research","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13409","display_name":"Paleopathology and ancient diseases","score":0.006200000178068876,"subfield":{"id":"https://openalex.org/subfields/1204","display_name":"Archeology (arts and humanities)"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.0005000000237487257,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/yersinia-pestis","display_name":"Yersinia pestis","score":1.0},{"id":"https://openalex.org/keywords/plague-of-justinian","display_name":"Justinianic Plague","score":0.9909999966621399},{"id":"https://openalex.org/keywords/ancient-dna","display_name":"ancient DNA","score":0.8349999785423279},{"id":"https://openalex.org/keywords/human-skeletal-remains","display_name":"skeletal remains","score":0.8270000219345093},{"id":"https://openalex.org/keywords/plague-etiology","display_name":"plague etiology","score":0.5460000038146973},{"id":"https://openalex.org/keywords/early-medieval-cemetery","display_name":"early medieval cemetery","score":0.7080000042915344},{"id":"https://openalex.org/keywords/plague-pandemics","display_name":"plague pandemics","score":0.6660000085830688}],"concepts":[{"id":"https://openalex.org/C2778222588","wikidata":"https://www.wikidata.org/wiki/Q153875","display_name":"Yersinia pestis","level":4,"score":0.9814267158508301},{"id":"https://openalex.org/C2778059882","wikidata":"https://www.wikidata.org/wiki/Q133780","display_name":"Plague (disease)","level":2,"score":0.8960573077201843},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5329611897468567},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.476204514503479},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.4709392786026001},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.262392520904541},{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.222001314163208},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2089843451976776},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08399301767349243},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001842","descriptor_name":"Bone and Bones","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010930","descriptor_name":"Plague","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":true},{"descriptor_ui":"D010930","descriptor_name":"Plague","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010930","descriptor_name":"Plague","qualifier_ui":"Q000266","qualifier_name":"history","is_major_topic":true},{"descriptor_ui":"D010930","descriptor_name":"Plague","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D010930","descriptor_name":"Plague","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D015010","descriptor_name":"Yersinia pestis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D049668","descriptor_name":"History, 15th Century","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049669","descriptor_name":"History, 16th Century","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049670","descriptor_name":"History, 17th Century","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049672","descriptor_name":"History, 19th Century","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049673","descriptor_name":"History, 20th Century","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049691","descriptor_name":"History, Medieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":"Q000266","qualifier_name":"history","is_major_topic":true}],"locations_count":11,"locations":[{"id":"doi:10.1371/journal.ppat.1003349","doi":"https://doi.org/10.1371/journal.ppat.1003349","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.ppat.1003349","pdf_url":null,"source":{"id":"https://openalex.org/S2004986","display_name":"PLoS Pathogens","issn_l":"1553-7366","issn":["1553-7366","1553-7374"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Pathogens","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2646085","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3642051","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3642051","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3642051","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Pathog","raw_type":"Text"},{"id":"pmid:23658525","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23658525","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS pathogens","raw_type":"Historical Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.660.2779","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.660.2779","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://epub.ub.uni-muenchen.de/15701/1/fetchObject.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.772.4733","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.772.4733","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/b8/b9/ppat.1003349.PMC3642051.pdf","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:91250c94b6804f5ebedbf3569f5f2bf5","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/91250c94b6804f5ebedbf3569f5f2bf5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Pathogens, Vol 9, Iss 5, p e1003349 (2013)","raw_type":"article"},{"id":"pmh:oai:epub.ub.uni-muenchen.de:15701","doi":null,"is_oa":false,"landing_page_url":"https://epub.ub.uni-muenchen.de/15701/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401845","display_name":"Open access LMU (Ludwid Maxmilian's Universitat Munchen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I8204097","host_organization_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","host_organization_lineage":["https://openalex.org/I8204097"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLOS Pathogens","raw_type":"doc-type:article"},{"id":"pmh:oai:sfera.unife.it:11392/2332316","doi":null,"is_oa":true,"landing_page_url":"https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1003349","pdf_url":null,"source":{"id":"https://openalex.org/S4306400369","display_name":"Institutional Research Information System University of Ferrara (University of Ferrara)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I201324441","host_organization_name":"University of Ferrara","host_organization_lineage":["https://openalex.org/I201324441"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:www.duo.uio.no:10852/56782","doi":null,"is_oa":true,"landing_page_url":"http://hdl.handle.net/10852/56782","pdf_url":null,"source":{"id":"https://openalex.org/S7407064446","display_name":"NORA - Norwegian Open Research Archives","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"1553-7366","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.5282/ubm/epub.15701","doi":"https://doi.org/10.5282/ubm/epub.15701","is_oa":true,"landing_page_url":"https://doi.org/10.5282/ubm/epub.15701","pdf_url":null,"source":{"id":"https://openalex.org/S7407052039","display_name":"Universit\u00e4tsbibliothek der LMU","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1371/journal.ppat.1003349","doi":"https://doi.org/10.1371/journal.ppat.1003349","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.ppat.1003349","pdf_url":null,"source":{"id":"https://openalex.org/S2004986","display_name":"PLoS Pathogens","issn_l":"1553-7366","issn":["1553-7366","1553-7374"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-2","medline","norway-2","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Pathogens","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G8479135178","display_name":null,"funder_award_id":"HSHQDC-10-C-00139","funder_id":"https://openalex.org/F4320306110","funder_display_name":"U.S. Department of Homeland Security"}],"funders":[{"id":"https://openalex.org/F4320306110","display_name":"U.S. Department of Homeland Security","ror":"https://ror.org/00jyr0d86"},{"id":"https://openalex.org/F4320310831","display_name":"Northern Arizona University","ror":"https://ror.org/0272j5188"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W50958012","https://openalex.org/W178304985","https://openalex.org/W609661577","https://openalex.org/W613306392","https://openalex.org/W1507498078","https://openalex.org/W1547524864","https://openalex.org/W1569313488","https://openalex.org/W1968824590","https://openalex.org/W1972968981","https://openalex.org/W1991909065","https://openalex.org/W2033983710","https://openalex.org/W2066084832","https://openalex.org/W2073891251","https://openalex.org/W2077890242","https://openalex.org/W2083218752","https://openalex.org/W2093869711","https://openalex.org/W2098387568","https://openalex.org/W2101294025","https://openalex.org/W2104390567","https://openalex.org/W2107828572","https://openalex.org/W2111205680","https://openalex.org/W2123604776","https://openalex.org/W2132298498","https://openalex.org/W2159138215","https://openalex.org/W2168105659","https://openalex.org/W2171929540","https://openalex.org/W2488748577","https://openalex.org/W4236265851"],"related_works":["https://openalex.org/W2048440791","https://openalex.org/W2123152317","https://openalex.org/W2902702443","https://openalex.org/W3081608117","https://openalex.org/W2088520609","https://openalex.org/W2073891251","https://openalex.org/W2982447323","https://openalex.org/W2531536880","https://openalex.org/W2417507817","https://openalex.org/W2519279108"],"abstract_inverted_index":{"Yersinia":[0],"pestis,":[1],"the":[2,6,18,22,33,36,40,45,50,79,84,101,120,124,133,152,158,161,176,184,187,193,202],"etiologic":[3],"agent":[4],"of":[5,21,39,83,103,123,163,169,186],"disease":[7],"plague,":[8],"has":[9],"been":[10],"implicated":[11],"in":[12,92,107,198],"three":[13],"historical":[14],"pandemics.":[15,65,206],"These":[16],"include":[17],"third":[19],"pandemic":[20,38,195],"19(th)":[23],"and":[24,35,141,190],"20(th)":[25],"centuries,":[26,42],"during":[27],"which":[28,43,155],"plague":[29,179,188,205],"was":[30,149],"spread":[31],"around":[32],"world,":[34],"second":[37],"14(th)-17(th)":[41],"included":[44],"infamous":[46],"epidemic":[47],"known":[48],"as":[49,73],"Black":[51],"Death.":[52],"Previous":[53],"studies":[54],"have":[55],"confirmed":[56,99],"that":[57,146,174,192],"Y.":[58,76,104,134,147,171],"pestis":[59,77,105,135,148,172],"caused":[60,78,175],"these":[61],"two":[62,93,204],"more":[63],"recent":[64],"However,":[66],"a":[67,170],"highly":[68],"spirited":[69],"debate":[70],"still":[71],"continues":[72],"to":[74,128,201],"whether":[75],"so-called":[80],"Justinianic":[81,153],"Plague":[82],"6(th)-8(th)":[85],"centuries":[86],"AD.":[87],"By":[88],"analyzing":[89],"ancient":[90,95],"DNA":[91,96,106],"independent":[94],"laboratories,":[97],"we":[98,118],"unambiguously":[100],"presence":[102],"human":[108],"skeletal":[109],"remains":[110],"from":[111],"an":[112],"Early":[113],"Medieval":[114],"cemetery.":[115],"In":[116],"addition,":[117],"narrowed":[119],"phylogenetic":[121],"position":[122],"responsible":[125,150],"strain":[126,173],"down":[127],"major":[129],"branch":[130],"0":[131],"on":[132],"phylogeny,":[136],"specifically":[137],"between":[138],"nodes":[139],"N03":[140],"N05.":[142],"Our":[143],"findings":[144],"confirm":[145],"for":[151],"Plague,":[154],"should":[156],"end":[157],"controversy":[159],"regarding":[160],"etiology":[162],"this":[164],"pandemic.":[165],"The":[166],"first":[167,194],"genotype":[168],"Late":[177],"Antique":[178],"provides":[180],"important":[181],"information":[182],"about":[183],"history":[185],"bacillus":[189],"suggests":[191],"also":[196],"originated":[197],"Asia,":[199],"similar":[200],"other":[203]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":21},{"year":2021,"cited_by_count":19},{"year":2020,"cited_by_count":23},{"year":2019,"cited_by_count":24},{"year":2018,"cited_by_count":35},{"year":2017,"cited_by_count":13},{"year":2016,"cited_by_count":42},{"year":2015,"cited_by_count":30},{"year":2014,"cited_by_count":21},{"year":2013,"cited_by_count":3}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}