{"id":"https://openalex.org/W2111332150","doi":"https://doi.org/10.1093/dnares/10.5.221","title":"Structural Analysis of Four Large Plasmids Harboring in a Unicellular Cyanobacterium, Synechocystis sp. PCC 6803","display_name":"Structural Analysis of Four Large Plasmids Harboring in a Unicellular Cyanobacterium, Synechocystis sp. PCC 6803","publication_year":2003,"publication_date":"2003-01-01","ids":{"openalex":"https://openalex.org/W2111332150","doi":"https://doi.org/10.1093/dnares/10.5.221","mag":"2111332150","pmid":"https://pubmed.ncbi.nlm.nih.gov/14686584"},"language":"en","primary_location":{"id":"doi:10.1093/dnares/10.5.221","doi":"https://doi.org/10.1093/dnares/10.5.221","is_oa":true,"landing_page_url":"https://doi.org/10.1093/dnares/10.5.221","pdf_url":"https://academic.oup.com/dnaresearch/article-pdf/10/5/221/6930094/dnares_10_5_221.pdf","source":{"id":"https://openalex.org/S143387647","display_name":"DNA Research","issn_l":"1340-2838","issn":["1340-2838","1756-1663"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-1","medline","norway-1","oarl","poland-140","russia-white-list-1"],"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"DNA Research","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/dnaresearch/article-pdf/10/5/221/6930094/dnares_10_5_221.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042640325","display_name":"Takakazu Kaneko","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210148592","display_name":"Kazusa DNA Research Institute","ror":"https://ror.org/04pnjx786","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210148592"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"T. Kaneko","raw_affiliation_strings":["Kazusa DNA Research Institute, 2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kazusa DNA Research Institute, 2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan","institution_ids":["https://openalex.org/I4210148592"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5042640325"],"corresponding_institution_ids":["https://openalex.org/I4210148592"],"apc_list":{"value":1400,"currency":"USD","value_usd":1400},"apc_paid":{"value":1400,"currency":"USD","value_usd":1400},"fwci":1.4521,"has_fulltext":true,"cited_by_count":130,"citation_normalized_percentile":{"value":0.80435254,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":100},"biblio":{"volume":"10","issue":"5","first_page":"221","last_page":"228"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.8461999893188477,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.8461999893188477,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.0794999971985817,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.03060000017285347,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/synechocystis-sp-pcc-6803","display_name":"Synechocystis sp. PCC 6803","score":0.9750000238418579},{"id":"https://openalex.org/keywords/large-plasmids","display_name":"large plasmids","score":0.8629999756813049},{"id":"https://openalex.org/keywords/protein-coding-genes","display_name":"protein-coding genes","score":0.7139999866485596},{"id":"https://openalex.org/keywords/para-gene","display_name":"para gene","score":0.722000002861023},{"id":"https://openalex.org/keywords/plasmid-origin","display_name":"plasmid origin","score":0.7820000052452087},{"id":"https://openalex.org/keywords/plasmid-evolution","display_name":"plasmid evolution","score":0.6240000128746033},{"id":"https://openalex.org/keywords/unknown-function-genes","display_name":"unknown function genes","score":0.5149999856948853}],"concepts":[{"id":"https://openalex.org/C22744801","wikidata":"https://www.wikidata.org/wiki/Q172778","display_name":"Plasmid","level":3,"score":0.9696627259254456},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8573012351989746},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.7402840256690979},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.695537805557251},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.5980726480484009},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5818862915039062},{"id":"https://openalex.org/C84148353","wikidata":"https://www.wikidata.org/wiki/Q863908","display_name":"Nucleic acid sequence","level":3,"score":0.4555966854095459},{"id":"https://openalex.org/C2780238584","wikidata":"https://www.wikidata.org/wiki/Q7662346","display_name":"Synechocystis","level":4,"score":0.43235453963279724},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000458","descriptor_name":"Cyanobacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010957","descriptor_name":"Plasmids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/dnares/10.5.221","doi":"https://doi.org/10.1093/dnares/10.5.221","is_oa":true,"landing_page_url":"https://doi.org/10.1093/dnares/10.5.221","pdf_url":"https://academic.oup.com/dnaresearch/article-pdf/10/5/221/6930094/dnares_10_5_221.pdf","source":{"id":"https://openalex.org/S143387647","display_name":"DNA Research","issn_l":"1340-2838","issn":["1340-2838","1756-1663"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-1","medline","norway-1","oarl","poland-140","russia-white-list-1"],"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"DNA Research","raw_type":"journal-article"},{"id":"pmid:14686584","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14686584","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"DNA research : an international journal for rapid publication of reports on genes and genomes","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.322.8552","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.322.8552","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://dnaresearch.oxfordjournals.org/content/10/5/221.full.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/dnares/10.5.221","doi":"https://doi.org/10.1093/dnares/10.5.221","is_oa":true,"landing_page_url":"https://doi.org/10.1093/dnares/10.5.221","pdf_url":"https://academic.oup.com/dnaresearch/article-pdf/10/5/221/6930094/dnares_10_5_221.pdf","source":{"id":"https://openalex.org/S143387647","display_name":"DNA Research","issn_l":"1340-2838","issn":["1340-2838","1756-1663"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-1","medline","norway-1","oarl","poland-140","russia-white-list-1"],"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"DNA Research","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2111332150.pdf","grobid_xml":"https://content.openalex.org/works/W2111332150.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1486208928","https://openalex.org/W1921645034","https://openalex.org/W1972120140","https://openalex.org/W1981097427","https://openalex.org/W1984266848","https://openalex.org/W2004541440","https://openalex.org/W2009663742","https://openalex.org/W2035187003","https://openalex.org/W2040912668","https://openalex.org/W2042688400","https://openalex.org/W2044689871","https://openalex.org/W2073322165","https://openalex.org/W2093230076","https://openalex.org/W2099553504","https://openalex.org/W2108849492","https://openalex.org/W2114204004","https://openalex.org/W2119465691","https://openalex.org/W2132350855","https://openalex.org/W2139980865","https://openalex.org/W2142415347","https://openalex.org/W2155025987","https://openalex.org/W2160704523","https://openalex.org/W2164249947","https://openalex.org/W4295127969","https://openalex.org/W6812128039","https://openalex.org/W6826094943"],"related_works":["https://openalex.org/W7100762936","https://openalex.org/W2118789093","https://openalex.org/W4391820144","https://openalex.org/W2164249947","https://openalex.org/W4295127969","https://openalex.org/W4212867313","https://openalex.org/W1996523778","https://openalex.org/W2040912668","https://openalex.org/W2329182807","https://openalex.org/W2160704523"],"abstract_inverted_index":{"The":[0,118,140],"genome":[1],"of":[2,11,18,25,49,84,100,109,115,120,143],"the":[3,22,26,46,75,97,110,121,131],"unicellular":[4],"cyanobacterium":[5],"Synechocystis":[6],"sp.":[7],"PCC":[8],"6803":[9],"consists":[10],"a":[12,106,144],"single":[13],"chromosome":[14,27],"and":[15,21,28,36,66,128],"several":[16],"plasmids":[17,31,101,125,152],"different":[19,157],"sizes,":[20],"nucleotide":[23,47],"sequences":[24,48],"three":[29],"small":[30],"(5.2":[32],"kb,":[33,35,61,63,65],"2.4":[34],"2.3":[37],"kb)":[38],"have":[39,54,154],"already":[40],"been":[41,55],"sequenced.":[42],"We":[43],"newly":[44],"determined":[45],"four":[50,137],"large":[51,107,138],"plasmids,":[52],"which":[53],"identified":[56],"in":[57],"our":[58],"laboratory":[59],"(pSYSM:120":[60],"pSYSX:106":[62],"pSYSA:103":[64],"pSYSG:44":[67],"kb).":[68],"Computer-aided":[69],"analysis":[70],"was":[71,94,126,130],"performed":[72],"to":[73,102,135],"explore":[74],"genetic":[76],"information":[77,93],"carried":[78],"by":[79],"these":[80],"plasmids.":[81,139],"A":[82],"total":[83],"397":[85],"potential":[86,122],"protein-encoding":[87],"genes":[88,112,123],"were":[89,114],"predicted,":[90],"but":[91],"little":[92],"obtained":[95],"about":[96],"functional":[98],"relationship":[99],"host":[103],"cell,":[104],"as":[105],"portion":[108],"predicted":[111],"(77%)":[113],"unknown":[116],"function.":[117],"occurrence":[119],"on":[124],"divergent,":[127],"parA":[129],"only":[132],"gene":[133],"common":[134],"all":[136],"distribution":[141],"data":[142],"Cyanobacterium-specific":[145],"sequence":[146],"(HIP1:":[147],"5'-GCGATCGC-3')":[148],"suggested":[149],"that":[150],"respective":[151],"could":[153],"originated":[155],"from":[156],"cyanobacterial":[158],"strains.":[159]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":15},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":12}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2016-06-24T00:00:00"}