{"id":"https://openalex.org/W2108923274","doi":"https://doi.org/10.1098/rspb.2009.1679","title":"Horizontal gene transfer in evolution: facts and challenges","display_name":"Horizontal gene transfer in evolution: facts and challenges","publication_year":2009,"publication_date":"2009-10-29","ids":{"openalex":"https://openalex.org/W2108923274","doi":"https://doi.org/10.1098/rspb.2009.1679","mag":"2108923274","pmid":"https://pubmed.ncbi.nlm.nih.gov/19864285","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/2842723"},"language":"en","primary_location":{"id":"doi:10.1098/rspb.2009.1679","doi":"https://doi.org/10.1098/rspb.2009.1679","is_oa":false,"landing_page_url":"https://doi.org/10.1098/rspb.2009.1679","pdf_url":null,"source":{"id":"https://openalex.org/S3006207977","display_name":"Proceedings of the Royal Society B Biological Sciences","issn_l":"0080-4649","issn":["0080-4649","0962-8452","1471-2954","2053-9193"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-b","jufo-3","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319787","host_organization_name":"Royal Society","host_organization_lineage":["https://openalex.org/P4310319787"],"host_organization_lineage_names":["Royal Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Royal Society B: Biological Sciences","raw_type":"journal-article"},"volume":null,"type":"review","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2842723","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065279054","display_name":"Luis Boto","orcid":"https://orcid.org/0000-0001-5792-8238","observed_orcids":["https://orcid.org/0000-0001-5792-8238"]},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I4210120109","display_name":"Museo Nacional de Ciencias Naturales","ror":"https://ror.org/02v6zg374","country_code":"ES","type":"archive","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210120109"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Luis Boto","raw_affiliation_strings":["Departamento Biodiversidad y Biolog\u00eda Evolutiva, Museo Nacional Ciencias Naturales, CSIC, C/Jos\u00e9 Gutierrez Abascal 2, 28006 Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento Biodiversidad y Biolog\u00eda Evolutiva, Museo Nacional Ciencias Naturales, CSIC, C/Jos\u00e9 Gutierrez Abascal 2, 28006 Madrid, Spain","institution_ids":["https://openalex.org/I134820265","https://openalex.org/I4210120109"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5065279054"],"corresponding_institution_ids":["https://openalex.org/I134820265","https://openalex.org/I4210120109"],"apc_list":null,"apc_paid":null,"fwci":1.503,"has_fulltext":false,"cited_by_count":398,"citation_normalized_percentile":{"value":0.83468635,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"277","issue":"1683","first_page":"819","last_page":"827"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.46799999475479126,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.46799999475479126,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.3337000012397766,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10778","display_name":"Philosophy of Biology and Scientific Explanation","score":0.052299998700618744,"subfield":{"id":"https://openalex.org/subfields/1207","display_name":"History and Philosophy of Science"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/horizontal-gene-transfer","display_name":"horizontal gene transfer","score":1.0},{"id":"https://openalex.org/keywords/prokaryotic-evolution","display_name":"prokaryotic evolution","score":0.9570000171661377},{"id":"https://openalex.org/keywords/microbial-evolution","display_name":"microbial evolution","score":0.843999981880188},{"id":"https://openalex.org/keywords/phylogenetic-reconstruction","display_name":"phylogenetic inference","score":0.718999981880188},{"id":"https://openalex.org/keywords/evolutionary-processes","display_name":"evolutionary processes","score":0.7160000205039978},{"id":"https://openalex.org/keywords/evolutionary-timescales","display_name":"evolutionary timescales","score":0.39399999380111694}],"concepts":[{"id":"https://openalex.org/C92938381","wikidata":"https://www.wikidata.org/wiki/Q83185","display_name":"Horizontal gene transfer","level":4,"score":0.9628713726997375},{"id":"https://openalex.org/C59218005","wikidata":"https://www.wikidata.org/wiki/Q17027571","display_name":"Horizontal and vertical","level":2,"score":0.6165773868560791},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.5469430685043335},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5173108577728271},{"id":"https://openalex.org/C196919123","wikidata":"https://www.wikidata.org/wiki/Q183493","display_name":"Darwinism","level":2,"score":0.482353150844574},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.448824942111969},{"id":"https://openalex.org/C3018928802","wikidata":"https://www.wikidata.org/wiki/Q83185","display_name":"Gene transfer","level":3,"score":0.41726383566856384},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.40383270382881165},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23706501722335815},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.12150940299034119},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1098/rspb.2009.1679","doi":"https://doi.org/10.1098/rspb.2009.1679","is_oa":false,"landing_page_url":"https://doi.org/10.1098/rspb.2009.1679","pdf_url":null,"source":{"id":"https://openalex.org/S3006207977","display_name":"Proceedings of the Royal Society B Biological Sciences","issn_l":"0080-4649","issn":["0080-4649","0962-8452","1471-2954","2053-9193"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-b","jufo-3","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319787","host_organization_name":"Royal Society","host_organization_lineage":["https://openalex.org/P4310319787"],"host_organization_lineage_names":["Royal Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the Royal Society B: Biological Sciences","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2842723","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2842723","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proc Biol Sci","raw_type":"Text"},{"id":"pmid:19864285","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19864285","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. Biological sciences","raw_type":"Journal Article"},{"id":"pmh:oai:digital.csic.es:10261/65322","doi":null,"is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/65322","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Pre-print"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:2842723","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2842723","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proc Biol Sci","raw_type":"Text"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":120,"referenced_works":["https://openalex.org/W56792789","https://openalex.org/W429083595","https://openalex.org/W1512943765","https://openalex.org/W1521833875","https://openalex.org/W1532998013","https://openalex.org/W1571255846","https://openalex.org/W1599192329","https://openalex.org/W1669459870","https://openalex.org/W1968749125","https://openalex.org/W1970668638","https://openalex.org/W1971528097","https://openalex.org/W1972740086","https://openalex.org/W1974594647","https://openalex.org/W1976186717","https://openalex.org/W1976841360","https://openalex.org/W1977405831","https://openalex.org/W1981687263","https://openalex.org/W1988159303","https://openalex.org/W1990724002","https://openalex.org/W1991605201","https://openalex.org/W1992680333","https://openalex.org/W1993470051","https://openalex.org/W1997116773","https://openalex.org/W1999478182","https://openalex.org/W2000175834","https://openalex.org/W2002006658","https://openalex.org/W2003159277","https://openalex.org/W2009219904","https://openalex.org/W2013041427","https://openalex.org/W2015732991","https://openalex.org/W2017718796","https://openalex.org/W2019115334","https://openalex.org/W2022219709","https://openalex.org/W2022569902","https://openalex.org/W2026744958","https://openalex.org/W2027031393","https://openalex.org/W2030073408","https://openalex.org/W2033623058","https://openalex.org/W2035821637","https://openalex.org/W2036325355","https://openalex.org/W2036848170","https://openalex.org/W2039571630","https://openalex.org/W2039706474","https://openalex.org/W2042597759","https://openalex.org/W2043994015","https://openalex.org/W2045194639","https://openalex.org/W2052184658","https://openalex.org/W2052430234","https://openalex.org/W2053708801","https://openalex.org/W2054963781","https://openalex.org/W2055298722","https://openalex.org/W2055758623","https://openalex.org/W2055997230","https://openalex.org/W2064844985","https://openalex.org/W2065505308","https://openalex.org/W2066195370","https://openalex.org/W2066818550","https://openalex.org/W2071674260","https://openalex.org/W2072872287","https://openalex.org/W2074567299","https://openalex.org/W2075700316","https://openalex.org/W2076857228","https://openalex.org/W2079115652","https://openalex.org/W2079327011","https://openalex.org/W2080049028","https://openalex.org/W2080725016","https://openalex.org/W2082473664","https://openalex.org/W2084267545","https://openalex.org/W2085047210","https://openalex.org/W2086569686","https://openalex.org/W2091487631","https://openalex.org/W2093610003","https://openalex.org/W2097446809","https://openalex.org/W2098558111","https://openalex.org/W2103103799","https://openalex.org/W2105557836","https://openalex.org/W2106265368","https://openalex.org/W2106665579","https://openalex.org/W2110105435","https://openalex.org/W2110667602","https://openalex.org/W2110786691","https://openalex.org/W2114930668","https://openalex.org/W2117882329","https://openalex.org/W2118360643","https://openalex.org/W2121166240","https://openalex.org/W2121884322","https://openalex.org/W2126278064","https://openalex.org/W2134650310","https://openalex.org/W2134915276","https://openalex.org/W2135123683","https://openalex.org/W2138952930","https://openalex.org/W2139762065","https://openalex.org/W2140560927","https://openalex.org/W2140749652","https://openalex.org/W2147208616","https://openalex.org/W2149120646","https://openalex.org/W2150550043","https://openalex.org/W2151980248","https://openalex.org/W2156331407","https://openalex.org/W2156908119","https://openalex.org/W2160008039","https://openalex.org/W2161762698","https://openalex.org/W2164253009","https://openalex.org/W2164968935","https://openalex.org/W2165140440","https://openalex.org/W2166666507","https://openalex.org/W2166865790","https://openalex.org/W2170246803","https://openalex.org/W2171193618","https://openalex.org/W2321083556","https://openalex.org/W2410525166","https://openalex.org/W2475481088","https://openalex.org/W2494911375","https://openalex.org/W2506868775","https://openalex.org/W2883512297","https://openalex.org/W4230640447","https://openalex.org/W4239067509","https://openalex.org/W4251551086","https://openalex.org/W4299541734","https://openalex.org/W7095857204"],"related_works":["https://openalex.org/W2125524014","https://openalex.org/W2501355869","https://openalex.org/W1973176521","https://openalex.org/W2479258543","https://openalex.org/W1985168947","https://openalex.org/W2027031393","https://openalex.org/W1971558429","https://openalex.org/W42322261","https://openalex.org/W2001137032","https://openalex.org/W2304080550"],"abstract_inverted_index":{"The":[0],"contribution":[1],"of":[2,73,81,94,102,144],"horizontal":[3,34,44,82,103,110,133],"gene":[4,35,45,83,104,111,134],"transfer":[5,36,46,84,112,135],"to":[6,15],"evolution":[7,20,49],"has":[8],"been":[9],"controversial":[10],"since":[11],"it":[12],"was":[13],"suggested":[14],"be":[16],"a":[17,124,127],"force":[18],"driving":[19],"in":[21,37,48,50,56,69,99,114,141],"the":[22,30,51,70,79,92,100,115,142],"microbial":[23],"world.":[24],"In":[25],"this":[26],"paper,":[27],"I":[28,59,90,107],"review":[29,60],"current":[31,116],"standpoint":[32],"on":[33],"evolutionary":[38,71,87,118,129],"thinking":[39],"and":[40,54,120],"discuss":[41,91,108],"how":[42,109],"important":[43],"is":[47,123],"broad":[52],"sense,":[53],"particularly":[55],"prokaryotic":[57],"evolution.":[58,145],"recent":[61],"literature,":[62],"asking,":[63],"first,":[64],"which":[65],"processes":[66],"are":[67],"involved":[68],"success":[72],"transferred":[74],"genes":[75],"and,":[76],"secondly,":[77],"about":[78],"extent":[80],"towards":[85],"different":[86],"times.":[88],"Moreover,":[89],"feasibility":[93],"reconstructing":[95],"ancient":[96],"phylogenetic":[97],"relationships":[98],"face":[101],"transfer.":[105],"Finally,":[106],"fits":[113],"neo-Darwinian":[117],"paradigm":[119,130],"conclude":[121],"there":[122],"need":[125],"for":[126],"new":[128],"that":[131],"includes":[132],"as":[136,138],"well":[137],"other":[139],"mechanisms":[140],"explanation":[143]},"counts_by_year":[{"year":2026,"cited_by_count":19},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":23},{"year":2023,"cited_by_count":18},{"year":2022,"cited_by_count":18},{"year":2021,"cited_by_count":36},{"year":2020,"cited_by_count":23},{"year":2019,"cited_by_count":35},{"year":2018,"cited_by_count":27},{"year":2017,"cited_by_count":22},{"year":2016,"cited_by_count":28},{"year":2015,"cited_by_count":18},{"year":2014,"cited_by_count":27},{"year":2013,"cited_by_count":29},{"year":2012,"cited_by_count":29}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2016-06-24T00:00:00"}
