{"id":"https://openalex.org/W2108077666","doi":"https://doi.org/10.1046/j.1365-2958.2002.03037.x","title":"Genome\u2010wide analysis of deoxyadenosine methyltransferase\u2010mediated control of gene expression in Escherichia coli","display_name":"Genome\u2010wide analysis of deoxyadenosine methyltransferase\u2010mediated control of gene expression in Escherichia coli","publication_year":2002,"publication_date":"2002-07-25","ids":{"openalex":"https://openalex.org/W2108077666","doi":"https://doi.org/10.1046/j.1365-2958.2002.03037.x","mag":"2108077666","pmid":"https://pubmed.ncbi.nlm.nih.gov/12139615"},"language":"en","primary_location":{"id":"doi:10.1046/j.1365-2958.2002.03037.x","doi":"https://doi.org/10.1046/j.1365-2958.2002.03037.x","is_oa":true,"landing_page_url":"https://doi.org/10.1046/j.1365-2958.2002.03037.x","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1046/j.1365-2958.2002.03037.x","source":{"id":"https://openalex.org/S102549058","display_name":"Molecular Microbiology","issn_l":"0950-382X","issn":["0950-382X","1365-2958"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-2","poland-100","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular Microbiology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1046/j.1365-2958.2002.03037.x","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102857228","display_name":"Taku Oshima","orcid":"https://orcid.org/0000-0002-0949-5543","observed_orcids":["https://orcid.org/0000-0002-0949-5543"]},"institutions":[{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210086780"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Taku Oshima","raw_affiliation_strings":["CREST, JST (Japan Science and Technology)","CREST, JST (Japan Science and Technology), Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CREST, JST (Japan Science and Technology)","institution_ids":["https://openalex.org/I4210086780"]},{"raw_affiliation_string":"CREST, JST (Japan Science and Technology), Japan","institution_ids":["https://openalex.org/I4210086780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062867984","display_name":"Chieko Wada","orcid":"https://orcid.org/0000-0003-2924-3594","observed_orcids":["https://orcid.org/0000-0003-2924-3594"]},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210086780"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Chieko Wada","raw_affiliation_strings":["CREST, JST (Japan Science and Technology), Japan","Institute for Virus Research, Kyoto University, Kyoto 606-8507, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CREST, JST (Japan Science and Technology), Japan","institution_ids":["https://openalex.org/I4210086780"]},{"raw_affiliation_string":"Institute for Virus Research, Kyoto University, Kyoto 606-8507, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018418408","display_name":"Yuya Kawagoe","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yuya Kawagoe","raw_affiliation_strings":["Department of Cell Biology, Nara Institute of Science and Technology, Ikoma, 630-0101, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cell Biology, Nara Institute of Science and Technology, Ikoma, 630-0101, Japan","institution_ids":["https://openalex.org/I75917431"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063724667","display_name":"Takeshi Ara","orcid":"https://orcid.org/0000-0003-1754-2837","observed_orcids":["https://orcid.org/0000-0003-1754-2837"]},"institutions":[{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210086780"]},{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takeshi Ara","raw_affiliation_strings":["CREST, JST (Japan Science and Technology), Japan","Department of Cell Biology, Nara Institute of Science and Technology, Ikoma, 630-0101, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CREST, JST (Japan Science and Technology), Japan","institution_ids":["https://openalex.org/I4210086780"]},{"raw_affiliation_string":"Department of Cell Biology, Nara Institute of Science and Technology, Ikoma, 630-0101, Japan","institution_ids":["https://openalex.org/I75917431"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041901363","display_name":"Maki Maeda","orcid":"https://orcid.org/0009-0002-2808-0498","observed_orcids":["https://orcid.org/0009-0002-2808-0498","https://orcid.org/0000-0001-5304-2771"]},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210086780"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Maki Maeda","raw_affiliation_strings":["CREST, JST (Japan Science and Technology), Japan","Institute for Virus Research, Kyoto University, Kyoto 606-8507, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CREST, JST (Japan Science and Technology), Japan","institution_ids":["https://openalex.org/I4210086780"]},{"raw_affiliation_string":"Institute for Virus Research, Kyoto University, Kyoto 606-8507, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yasushi Masuda","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210086780"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yasushi Masuda","raw_affiliation_strings":["CREST, JST (Japan Science and Technology), Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CREST, JST (Japan Science and Technology), Japan","institution_ids":["https://openalex.org/I4210086780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113692929","display_name":"Sota Hiraga","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4405286258","display_name":"Institute of Molecular Embryology and Genetics, Kumamoto University","ror":"https://ror.org/01mrmn149","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4405286258","https://openalex.org/I96036126"]},{"id":"https://openalex.org/I96036126","display_name":"Kumamoto University","ror":"https://ror.org/02cgss904","country_code":"JP","type":"education","lineage":["https://openalex.org/I96036126"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Sota Hiraga","raw_affiliation_strings":["Department of Molecular Cell Biology, Institute of Molecular Embryology and, Genetics, Kumamoto University School of Medicine, Kumamoto 862-0976, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Cell Biology, Institute of Molecular Embryology and, Genetics, Kumamoto University School of Medicine, Kumamoto 862-0976, Japan","institution_ids":["https://openalex.org/I4405286258","https://openalex.org/I96036126"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039094403","display_name":"Hirotada Mori","orcid":"https://orcid.org/0000-0003-3855-778X","observed_orcids":["https://orcid.org/0000-0003-3855-778X"]},"institutions":[{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210086780"]},{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Hirotada Mori","raw_affiliation_strings":["CREST, JST (Japan Science and Technology), Japan","Research and Education Center for Genetic Information, Nara Institute of Science and Technology, Ikoma 630-0101, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CREST, JST (Japan Science and Technology), Japan","institution_ids":["https://openalex.org/I4210086780"]},{"raw_affiliation_string":"Research and Education Center for Genetic Information, Nara Institute of Science and Technology, Ikoma 630-0101, Japan","institution_ids":["https://openalex.org/I75917431"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5039094403"],"corresponding_institution_ids":["https://openalex.org/I4210086780","https://openalex.org/I75917431"],"apc_list":{"value":4430,"currency":"USD","value_usd":4430},"apc_paid":null,"fwci":8.0373,"has_fulltext":true,"cited_by_count":155,"citation_normalized_percentile":{"value":0.98331504,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"45","issue":"3","first_page":"673","last_page":"695"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.003000000026077032,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.00039999998989515007,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dam-methyltransferase","display_name":"Dam methyltransferase","score":0.8240000009536743},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.8180000185966492},{"id":"https://openalex.org/keywords/gatc-sequence","display_name":"GATC sequence","score":0.8960000276565552},{"id":"https://openalex.org/keywords/gene-expression-regulation","display_name":"gene expression regulation","score":0.8019999861717224},{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.890999972820282},{"id":"https://openalex.org/keywords/fnr","display_name":"FNR","score":0.640999972820282},{"id":"https://openalex.org/keywords/catabolite-activator-protein","display_name":"catabolite activator protein","score":0.9240000247955322},{"id":"https://openalex.org/keywords/global-gene-regulation","display_name":"global gene regulation","score":0.5440000295639038},{"id":"https://openalex.org/keywords/aerobic-respiration","display_name":"aerobic respiration","score":0.8259999752044678},{"id":"https://openalex.org/keywords/anaerobic-respiration","display_name":"anaerobic respiration","score":0.9330000281333923},{"id":"https://openalex.org/keywords/flagella-biosynthesis","display_name":"flagella biosynthesis","score":0.7950000166893005},{"id":"https://openalex.org/keywords/chemotaxis","display_name":"chemotaxis","score":0.8299999833106995},{"id":"https://openalex.org/keywords/motility","display_name":"motility","score":0.8209999799728394},{"id":"https://openalex.org/keywords/sos-response","display_name":"SOS response","score":0.699999988079071},{"id":"https://openalex.org/keywords/stress-response","display_name":"stress response","score":0.6430000066757202},{"id":"https://openalex.org/keywords/amino-acid-metabolism","display_name":"amino acid metabolism","score":0.8629999756813049},{"id":"https://openalex.org/keywords/nucleotide-metabolism","display_name":"nucleotide metabolism","score":0.9980000257492065}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9052276611328125},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.7193703055381775},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.5400487184524536},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.523481011390686},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4910573959350586},{"id":"https://openalex.org/C203075996","wikidata":"https://www.wikidata.org/wiki/Q139677","display_name":"Operon","level":4,"score":0.43558967113494873},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.43186870217323303},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.414673388004303}],"mesh":[{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002352","descriptor_name":"Carrier Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002373","descriptor_name":"Cyclic AMP Receptor Protein","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007506","descriptor_name":"Iron-Sulfur Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010743","descriptor_name":"Phospholipids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012486","descriptor_name":"Salmonella typhimurium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015152","descriptor_name":"Blotting, Northern","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015265","descriptor_name":"Site-Specific DNA-Methyltransferase (Adenine-Specific)","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015265","descriptor_name":"Site-Specific DNA-Methyltransferase (Adenine-Specific)","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015265","descriptor_name":"Site-Specific DNA-Methyltransferase (Adenine-Specific)","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033902","descriptor_name":"Periplasmic Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1046/j.1365-2958.2002.03037.x","doi":"https://doi.org/10.1046/j.1365-2958.2002.03037.x","is_oa":true,"landing_page_url":"https://doi.org/10.1046/j.1365-2958.2002.03037.x","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1046/j.1365-2958.2002.03037.x","source":{"id":"https://openalex.org/S102549058","display_name":"Molecular Microbiology","issn_l":"0950-382X","issn":["0950-382X","1365-2958"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-2","poland-100","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular Microbiology","raw_type":"journal-article"},{"id":"pmid:12139615","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12139615","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular microbiology","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1046/j.1365-2958.2002.03037.x","doi":"https://doi.org/10.1046/j.1365-2958.2002.03037.x","is_oa":true,"landing_page_url":"https://doi.org/10.1046/j.1365-2958.2002.03037.x","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1046/j.1365-2958.2002.03037.x","source":{"id":"https://openalex.org/S102549058","display_name":"Molecular Microbiology","issn_l":"0950-382X","issn":["0950-382X","1365-2958"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","doyens","jufo-2","ki-jl-2","medline","norway-2","poland-100","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Molecular Microbiology","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320338075","display_name":"Core Research for Evolutional Science and Technology","ror":"https://ror.org/00097mb19"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2108077666.pdf","grobid_xml":"https://content.openalex.org/works/W2108077666.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W100769722","https://openalex.org/W563259730","https://openalex.org/W1425706641","https://openalex.org/W1481505704","https://openalex.org/W1503064596","https://openalex.org/W1512810258","https://openalex.org/W1523922578","https://openalex.org/W1593385374","https://openalex.org/W1608860139","https://openalex.org/W1726770599","https://openalex.org/W1799643894","https://openalex.org/W1850697763","https://openalex.org/W1891919506","https://openalex.org/W1918966211","https://openalex.org/W1968163718","https://openalex.org/W1968315488","https://openalex.org/W1976680803","https://openalex.org/W1979231556","https://openalex.org/W1980064965","https://openalex.org/W1985509058","https://openalex.org/W1987188698","https://openalex.org/W1991177891","https://openalex.org/W1993305583","https://openalex.org/W2008243144","https://openalex.org/W2018476252","https://openalex.org/W2033707082","https://openalex.org/W2036837330","https://openalex.org/W2038306721","https://openalex.org/W2041220560","https://openalex.org/W2064693166","https://openalex.org/W2072802762","https://openalex.org/W2083134498","https://openalex.org/W2090099066","https://openalex.org/W2101191634","https://openalex.org/W2104965231","https://openalex.org/W2111477901","https://openalex.org/W2124008391","https://openalex.org/W2132809900","https://openalex.org/W2134153749","https://openalex.org/W2134701031","https://openalex.org/W2143659234","https://openalex.org/W2145227862","https://openalex.org/W2154472074","https://openalex.org/W2155542617","https://openalex.org/W2159482845","https://openalex.org/W2160915428","https://openalex.org/W2165011536","https://openalex.org/W2292299839","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W7099352562","https://openalex.org/W2012964046","https://openalex.org/W2968697397","https://openalex.org/W7096717087","https://openalex.org/W2143527741","https://openalex.org/W2283896011","https://openalex.org/W2160150996","https://openalex.org/W1984447503","https://openalex.org/W2059683924","https://openalex.org/W7099871552"],"abstract_inverted_index":{"Deoxyadenosine":[0],"methyltransferase":[1],"(Dam)":[2],"methylates":[3],"the":[4,26,68,73,77,93,97,111,135,159,177,233],"deoxyadenine":[5],"residues":[6],"in":[7,13,17,39,116,134,139,148,158,175,232],"5'-GATC-3'":[8],"sequences":[9,35,204],"and":[10,31,64,76,120,126,154,166,179,182,218,242],"is":[11],"important":[12,230],"many":[14],"cellular":[15],"processes":[16],"Escherichia":[18],"coli.":[19],"We":[20,86,223],"performed":[21],"a":[22,53,103],"computational":[23],"analysis":[24,91],"of":[25,57,72,92,102,106,145,192,194,236],"entire":[27],"E.":[28,59],"coli":[29,60],"genome":[30],"confirmed":[32],"that":[33,44,205,225],"GATC":[34,203],"are":[36,173],"distributed":[37],"unevenly":[38],"regulatory":[40],"regions,":[41],"which":[42],"suggests":[43],"Dam":[45],"might":[46],"regulate":[47],"gene":[48,69],"transcription.":[49],"To":[50],"test":[51],"this,":[52],"high-density":[54],"DNA":[55],"microarray":[56],"4097":[58],"genes":[61,107,146,172,197],"was":[62,108,156],"constructed":[63],"used":[65,88],"to":[66,95,185,201],"assess":[67,96],"expression":[70,101],"profiles":[71],"wild":[74],"type":[75],"dam-16::kam":[78],"mutant":[79,136,161],"strain":[80,162],"grown":[81],"under":[82,163],"four":[83],"different":[84],"conditions.":[85,141,169,189],"also":[87,199],"two-dimensional":[89],"electrophoretic":[90],"proteome":[94],"protein":[98,221],"profiles.":[99],"The":[100,190],"large":[104],"number":[105],"affected":[109],"by":[110],"dam":[112,160],"deficiency.":[113],"Genes":[114],"involved":[115,174],"aerobic":[117,140,165,168],"respiration,":[118,150],"stress":[119],"SOS":[121],"responses,":[122],"amino":[123],"acid":[124],"metabolism":[125,128],"nucleotide":[127],"were":[129,198],"expressed":[130],"at":[131],"higher":[132],"levels":[133],"cells,":[137],"especially":[138],"In":[142],"contrast,":[143],"transcription":[144],"participating":[147],"anaerobic":[149],"flagella":[151],"biosynthesis,":[152],"chemotaxis":[153],"motility":[155,184],"decreased":[157],"both":[164],"low":[167],"Thus,":[170],"Dam-controlled":[171,196],"adjusting":[176],"metabolic":[178],"respiratory":[180],"pathways":[181],"bacterial":[183],"suit":[186],"particular":[187],"environmental":[188],"promoters":[191],"most":[193],"these":[195],"found":[200],"contain":[202],"overlap":[206],"with":[207,240],"recognition":[208],"sites":[209],"for":[210],"two":[211],"global":[212,234],"regulators,":[213],"fumarate":[214],"nitrate":[215],"reduction":[216],"(Fnr)":[217],"catabolite":[219],"activator":[220],"(CRP).":[222],"propose":[224],"Dam-mediated":[226],"methylation":[227],"plays":[228],"an":[229],"role":[231],"regulation":[235],"genes,":[237],"particularly":[238],"those":[239],"Fnr":[241],"CRP":[243],"binding":[244],"sites.":[245]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":7}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}
