{"id":"https://openalex.org/W2108058173","doi":"https://doi.org/10.1104/pp.111.172684","title":"Genomic Analysis of Circadian Clock-, Light-, and Growth-Correlated Genes Reveals PHYTOCHROME-INTERACTING FACTOR5 as a Modulator of Auxin Signaling in Arabidopsis","display_name":"Genomic Analysis of Circadian Clock-, Light-, and Growth-Correlated Genes Reveals PHYTOCHROME-INTERACTING FACTOR5 as a Modulator of Auxin Signaling in Arabidopsis","publication_year":2011,"publication_date":"2011-03-23","ids":{"openalex":"https://openalex.org/W2108058173","doi":"https://doi.org/10.1104/pp.111.172684","mag":"2108058173","pmid":"https://pubmed.ncbi.nlm.nih.gov/21430186","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/3091056"},"language":"en","primary_location":{"id":"doi:10.1104/pp.111.172684","doi":"https://doi.org/10.1104/pp.111.172684","is_oa":true,"landing_page_url":"https://doi.org/10.1104/pp.111.172684","pdf_url":"https://academic.oup.com/plphys/article-pdf/156/1/357/37143166/plphys_v156_1_357.pdf","source":{"id":"https://openalex.org/S42294715","display_name":"PLANT PHYSIOLOGY","issn_l":"0032-0889","issn":["0032-0889","1532-2548"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","jufo-3","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Physiology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/plphys/article-pdf/156/1/357/37143166/plphys_v156_1_357.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027054185","display_name":"Kazunari Nozue","orcid":"https://orcid.org/0000-0002-4476-4155","observed_orcids":["https://orcid.org/0000-0002-4476-4155"]},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kazunari Nozue","raw_affiliation_strings":["Department of Plant Biology, College of Biological Sciences, University of California, Davis, California 95616","Department of Plant Biology, College of Biological Sciences, University of California Davis California 95616 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Biology, College of Biological Sciences, University of California, Davis, California 95616","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"Department of Plant Biology, College of Biological Sciences, University of California Davis California 95616 USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045305371","display_name":"Stacey L. Harmer","orcid":"https://orcid.org/0000-0001-6813-6682","observed_orcids":["https://orcid.org/0000-0001-6813-6682"]},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stacey L. Harmer","raw_affiliation_strings":["Department of Plant Biology, College of Biological Sciences, University of California, Davis, California 95616"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Biology, College of Biological Sciences, University of California, Davis, California 95616","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041870964","display_name":"Julin Maloof","orcid":"https://orcid.org/0000-0002-9623-2599","observed_orcids":["https://orcid.org/0000-0002-9623-2599"]},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Julin N. Maloof","raw_affiliation_strings":["Department of Plant Biology, College of Biological Sciences, University of California, Davis, California 95616"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Biology, College of Biological Sciences, University of California, Davis, California 95616","institution_ids":["https://openalex.org/I84218800"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I84218800"],"apc_list":{"value":3851,"currency":"USD","value_usd":3851},"apc_paid":{"value":3851,"currency":"USD","value_usd":3851},"fwci":18.889,"has_fulltext":true,"cited_by_count":152,"citation_normalized_percentile":{"value":0.99541937,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"156","issue":"1","first_page":"357","last_page":"372"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11268","display_name":"Light effects on plants","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11268","display_name":"Light effects on plants","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.012500000186264515,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10342","display_name":"Circadian rhythm and melatonin","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/2807","display_name":"Endocrine and Autonomic Systems"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/circadian-clock","display_name":"circadian clock","score":0.8180000185966492},{"id":"https://openalex.org/keywords/light-signaling","display_name":"light signaling","score":0.8970000147819519},{"id":"https://openalex.org/keywords/hypocotyl-growth","display_name":"hypocotyl growth","score":0.7129999995231628},{"id":"https://openalex.org/keywords/auxin-signaling","display_name":"auxin signaling","score":0.9750000238418579},{"id":"https://openalex.org/keywords/gibberellin-signaling","display_name":"gibberellin signaling","score":0.8159999847412109},{"id":"https://openalex.org/keywords/bhlh-transcription-factors","display_name":"bHLH transcription factors","score":0.8679999709129333},{"id":"https://openalex.org/keywords/gene-regulatory-networks","display_name":"gene regulatory networks","score":0.5590000152587891},{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.8629999756813049}],"concepts":[{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.8609887361526489},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.816650390625},{"id":"https://openalex.org/C207778908","wikidata":"https://www.wikidata.org/wiki/Q190022","display_name":"Auxin","level":3,"score":0.8124243021011353},{"id":"https://openalex.org/C90180588","wikidata":"https://www.wikidata.org/wiki/Q24779306","display_name":"Phytochrome","level":3,"score":0.7383040189743042},{"id":"https://openalex.org/C38606739","wikidata":"https://www.wikidata.org/wiki/Q5121352","display_name":"Circadian clock","level":3,"score":0.7040858268737793},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.5701207518577576},{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.490607887506485},{"id":"https://openalex.org/C121446783","wikidata":"https://www.wikidata.org/wiki/Q208353","display_name":"Circadian rhythm","level":2,"score":0.4704267978668213},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.43393227458000183},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.43315190076828003},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4236580431461334},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.3682575225830078},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.19890043139457703},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.0785837471485138},{"id":"https://openalex.org/C2986477067","wikidata":"https://www.wikidata.org/wiki/Q1210055","display_name":"Red light","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D002940","descriptor_name":"Circadian Rhythm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005875","descriptor_name":"Gibberellins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007210","descriptor_name":"Indoleacetic Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008027","descriptor_name":"Light","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010834","descriptor_name":"Phytochrome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":false},{"descriptor_ui":"D017440","descriptor_name":"Photoperiod","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018546","descriptor_name":"Hypocotyl","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018546","descriptor_name":"Hypocotyl","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D018546","descriptor_name":"Hypocotyl","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D018546","descriptor_name":"Hypocotyl","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D029681","descriptor_name":"Arabidopsis Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D029681","descriptor_name":"Arabidopsis Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D030821","descriptor_name":"Plants, Genetically Modified","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D036226","descriptor_name":"Seedlings","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D036226","descriptor_name":"Seedlings","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D036226","descriptor_name":"Seedlings","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D036226","descriptor_name":"Seedlings","qualifier_ui":"Q000528","qualifier_name":"radiation effects","is_major_topic":false},{"descriptor_ui":"D051792","descriptor_name":"Basic Helix-Loop-Helix Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D051792","descriptor_name":"Basic Helix-Loop-Helix Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D057906","descriptor_name":"Circadian Clocks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1104/pp.111.172684","doi":"https://doi.org/10.1104/pp.111.172684","is_oa":true,"landing_page_url":"https://doi.org/10.1104/pp.111.172684","pdf_url":"https://academic.oup.com/plphys/article-pdf/156/1/357/37143166/plphys_v156_1_357.pdf","source":{"id":"https://openalex.org/S42294715","display_name":"PLANT PHYSIOLOGY","issn_l":"0032-0889","issn":["0032-0889","1532-2548"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","jufo-3","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Physiology","raw_type":"journal-article"},{"id":"pmid:21430186","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21430186","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant physiology","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3091056","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC3091056/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Physiol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1104/pp.111.172684","doi":"https://doi.org/10.1104/pp.111.172684","is_oa":true,"landing_page_url":"https://doi.org/10.1104/pp.111.172684","pdf_url":"https://academic.oup.com/plphys/article-pdf/156/1/357/37143166/plphys_v156_1_357.pdf","source":{"id":"https://openalex.org/S42294715","display_name":"PLANT PHYSIOLOGY","issn_l":"0032-0889","issn":["0032-0889","1532-2548"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-a","jufo-3","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Physiology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.40450000762939453,"display_name":"Zero hunger"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G2564367327","display_name":"Circadian Regulation of Auxin Signal Transduction","funder_award_id":"0616179","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8074680766","display_name":"YIA-PGR: Molecular Evolutionary Genetics of Crop and Weed Responses to Crowding","funder_award_id":"0227103","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G862018110","display_name":"Molecular analysis of circadian regulation in Arabidopsis","funder_award_id":"R01GM069418","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309036","display_name":"Purdue University","ror":"https://ror.org/02dqehb95"},{"id":"https://openalex.org/F4320310133","display_name":"Rice University","ror":"https://ror.org/008zs3103"},{"id":"https://openalex.org/F4320323831","display_name":"Universit\u00e9 de Lausanne","ror":"https://ror.org/019whta54"},{"id":"https://openalex.org/F4320332564","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2108058173.pdf","grobid_xml":"https://content.openalex.org/works/W2108058173.grobid-xml"},"referenced_works_count":83,"referenced_works":["https://openalex.org/W1812401750","https://openalex.org/W1878701280","https://openalex.org/W1894618039","https://openalex.org/W1970396605","https://openalex.org/W1971303422","https://openalex.org/W1974169071","https://openalex.org/W1975081311","https://openalex.org/W1979699650","https://openalex.org/W1991883784","https://openalex.org/W1993511867","https://openalex.org/W1994700942","https://openalex.org/W1997522177","https://openalex.org/W2005635949","https://openalex.org/W2006745977","https://openalex.org/W2011007693","https://openalex.org/W2013000773","https://openalex.org/W2016076879","https://openalex.org/W2021884905","https://openalex.org/W2022419224","https://openalex.org/W2023928327","https://openalex.org/W2027226057","https://openalex.org/W2029057282","https://openalex.org/W2032137146","https://openalex.org/W2035421116","https://openalex.org/W2047708521","https://openalex.org/W2051717544","https://openalex.org/W2054987589","https://openalex.org/W2055323344","https://openalex.org/W2064672115","https://openalex.org/W2067948646","https://openalex.org/W2068549282","https://openalex.org/W2072218650","https://openalex.org/W2076807345","https://openalex.org/W2078823122","https://openalex.org/W2086654822","https://openalex.org/W2086947899","https://openalex.org/W2088659854","https://openalex.org/W2089211291","https://openalex.org/W2091407052","https://openalex.org/W2091999870","https://openalex.org/W2092425394","https://openalex.org/W2100450391","https://openalex.org/W2100517508","https://openalex.org/W2100774711","https://openalex.org/W2107167005","https://openalex.org/W2111000850","https://openalex.org/W2111906292","https://openalex.org/W2117257242","https://openalex.org/W2117558561","https://openalex.org/W2118647549","https://openalex.org/W2121091648","https://openalex.org/W2121812493","https://openalex.org/W2123912338","https://openalex.org/W2124909110","https://openalex.org/W2132801043","https://openalex.org/W2136059078","https://openalex.org/W2136749988","https://openalex.org/W2138469844","https://openalex.org/W2139218190","https://openalex.org/W2140918488","https://openalex.org/W2140949512","https://openalex.org/W2143480160","https://openalex.org/W2145541181","https://openalex.org/W2146548897","https://openalex.org/W2151066815","https://openalex.org/W2152588225","https://openalex.org/W2156091491","https://openalex.org/W2156150909","https://openalex.org/W2157320430","https://openalex.org/W2157660397","https://openalex.org/W2158046293","https://openalex.org/W2159513868","https://openalex.org/W2159675211","https://openalex.org/W2160697532","https://openalex.org/W2162607489","https://openalex.org/W2162767601","https://openalex.org/W2164655883","https://openalex.org/W2164792480","https://openalex.org/W2169342152","https://openalex.org/W2169596174","https://openalex.org/W2171800694","https://openalex.org/W2172215633","https://openalex.org/W4211245492"],"related_works":["https://openalex.org/W1505754669","https://openalex.org/W2169823881","https://openalex.org/W2114030414","https://openalex.org/W2061047860","https://openalex.org/W2029139246","https://openalex.org/W2053760100","https://openalex.org/W7096234113","https://openalex.org/W2016076879","https://openalex.org/W7052163446","https://openalex.org/W2784037310"],"abstract_inverted_index":{"Plants":[0],"exhibit":[1],"daily":[2],"rhythms":[3],"in":[4,55,163,169,181],"their":[5],"growth,":[6],"providing":[7],"an":[8],"ideal":[9],"system":[10],"for":[11],"the":[12,27,90,105,152,160,197],"study":[13],"of":[14,74,80,92,100,121,190,196],"interactions":[15],"between":[16,89],"environmental":[17],"stimuli":[18],"such":[19,25],"as":[20,26],"light":[21,45],"and":[22,42,46,64,76,95,107,139,144,168,193],"internal":[23],"regulators":[24],"circadian":[28,47],"clock.":[29],"We":[30,172],"previously":[31],"found":[32],"that":[33,104,174],"two":[34,177],"basic":[35],"loop-helix-loop":[36],"transcription":[37],"factors,":[38],"PHYTOCHROME-INTERACTING":[39],"FACTOR4":[40],"(PIF4)":[41],"PIF5,":[43,140],"integrate":[44],"clock":[48],"signaling":[49],"to":[50,68,115],"generate":[51],"rhythmic":[52,126,183],"plant":[53],"growth":[54,66,70,117],"Arabidopsis":[56],"(Arabidopsis":[57],"thaliana).":[58],"Here,":[59],"we":[60],"use":[61],"expression":[62],"profiling":[63],"real-time":[65],"assays":[67],"identify":[69],"regulatory":[71],"networks":[72],"downstream":[73,178],"PIF4":[75,138,186],"PIF5.":[77],"Genome-wide":[78],"analysis":[79,99],"light-,":[81,94],"clock-,":[82,93],"or":[83],"growth-correlated":[84,101],"genes":[85,102,124,130,135,146],"showed":[86],"significant":[87],"overlap":[88],"transcriptomes":[91],"growth-related":[96],"pathways.":[97],"Overrepresentation":[98],"predicted":[103],"auxin":[106,142,153],"gibberellic":[108],"acid":[109],"(GA)":[110],"hormone":[111],"pathways":[112,192],"both":[113],"contribute":[114],"diurnal":[116,182],"control.":[118],"Indeed,":[119],"lesions":[120],"GA":[122,161,198],"biosynthesis":[123],"retarded":[125],"growth.":[127],"Surprisingly,":[128],"GA-responsive":[129],"are":[131],"not":[132],"enriched":[133],"among":[134],"regulated":[136],"by":[137],"whereas":[141],"pathway":[143],"response":[145,154,162],"are.":[147],"Consistent":[148],"with":[149],"this":[150],"finding,":[151],"is":[155],"more":[156],"severely":[157],"affected":[158],"than":[159],"pif4":[164],"pif5":[165],"double":[166],"mutants":[167],"PIF5-overexpressing":[170],"lines.":[171],"conclude":[173],"at":[175],"least":[176],"modules":[179],"participate":[180],"hypocotyl":[184],"growth:":[185],"and/or":[187],"PIF5":[188],"modulation":[189],"auxin-related":[191],"PIF-independent":[194],"regulation":[195],"pathway.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":14},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":15},{"year":2012,"cited_by_count":21}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2016-06-24T00:00:00"}