{"id":"https://openalex.org/W2107713376","doi":"https://doi.org/10.1152/ajpcell.00182.2006","title":"\u201cClock-scan\u201d protocol for image analysis","display_name":"\u201cClock-scan\u201d protocol for image analysis","publication_year":2006,"publication_date":"2006-06-01","ids":{"openalex":"https://openalex.org/W2107713376","doi":"https://doi.org/10.1152/ajpcell.00182.2006","mag":"2107713376","pmid":"https://pubmed.ncbi.nlm.nih.gov/16738004"},"language":"en","primary_location":{"id":"doi:10.1152/ajpcell.00182.2006","doi":"https://doi.org/10.1152/ajpcell.00182.2006","is_oa":false,"landing_page_url":"https://doi.org/10.1152/ajpcell.00182.2006","pdf_url":null,"source":{"id":"https://openalex.org/S62704344","display_name":"American Journal of Physiology-Cell Physiology","issn_l":"0363-6143","issn":["0363-6143","1522-1563"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","doyens","jufo-2","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320261","host_organization_name":"American Physical Society","host_organization_lineage":["https://openalex.org/P4310320261"],"host_organization_lineage_names":["American Physical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"American Journal of Physiology-Cell Physiology","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083200304","display_name":"Maxim G. Dobretsov","orcid":"https://orcid.org/0000-0001-6007-9775","observed_orcids":["https://orcid.org/0000-0001-6007-9775"]},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maxim Dobretsov","raw_affiliation_strings":["Dept. of Anesthesiology, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA. dobretsovmaxim@uams.edu","Department of Anesthesiology, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Anesthesiology, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA. dobretsovmaxim@uams.edu","institution_ids":["https://openalex.org/I79620101"]},{"raw_affiliation_string":"Department of Anesthesiology, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010639590","display_name":"Dmitry Romanovsky","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dmitry Romanovsky","raw_affiliation_strings":[""],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1906,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.57798555,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"291","issue":"5","first_page":"C869","last_page":"C879"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12923","display_name":"Digital Image Processing Techniques","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/image-analysis","display_name":"image analysis","score":0.5910000205039978},{"id":"https://openalex.org/keywords/protein-distribution","display_name":"protein distribution","score":0.39100000262260437},{"id":"https://openalex.org/keywords/dorsal-root-ganglion-neurons","display_name":"dorsal root ganglion neurons","score":0.9340000152587891},{"id":"https://openalex.org/keywords/neuronal-cell-bodies","display_name":"neuronal cell bodies","score":0.7580000162124634},{"id":"https://openalex.org/keywords/immunohistochemistry","display_name":"immunohistochemistry","score":0.6150000095367432},{"id":"https://openalex.org/keywords/immunofluorescence","display_name":"immunofluorescence","score":0.9110000133514404},{"id":"https://openalex.org/keywords/cell-shape","display_name":"cell shape","score":0.3709999918937683}],"concepts":[{"id":"https://openalex.org/C160633673","wikidata":"https://www.wikidata.org/wiki/Q355198","display_name":"Pixel","level":2,"score":0.761978805065155},{"id":"https://openalex.org/C93038891","wikidata":"https://www.wikidata.org/wiki/Q1061524","display_name":"Intensity (physics)","level":2,"score":0.5802247524261475},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5154502987861633},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5087135434150696},{"id":"https://openalex.org/C205372480","wikidata":"https://www.wikidata.org/wiki/Q210521","display_name":"Image resolution","level":2,"score":0.5063344240188599},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4615374505519867},{"id":"https://openalex.org/C68060419","wikidata":"https://www.wikidata.org/wiki/Q40754","display_name":"Subtraction","level":2,"score":0.4580930173397064},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.4318584203720093},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.38719692826271057},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3273624777793884},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.280956506729126},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.26552119851112366},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.21360665559768677},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09218752384185791},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002478","descriptor_name":"Cells, Cultured","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005727","descriptor_name":"Ganglia, Spinal","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1152/ajpcell.00182.2006","doi":"https://doi.org/10.1152/ajpcell.00182.2006","is_oa":false,"landing_page_url":"https://doi.org/10.1152/ajpcell.00182.2006","pdf_url":null,"source":{"id":"https://openalex.org/S62704344","display_name":"American Journal of Physiology-Cell Physiology","issn_l":"0363-6143","issn":["0363-6143","1522-1563"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","doyens","jufo-2","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320261","host_organization_name":"American Physical Society","host_organization_lineage":["https://openalex.org/P4310320261"],"host_organization_lineage_names":["American Physical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"American Journal of Physiology-Cell Physiology","raw_type":"journal-article"},{"id":"pmid:16738004","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16738004","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"American journal of physiology. Cell physiology","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G5796579810","display_name":null,"funder_award_id":"DK-67248","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"}],"funders":[{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1530855917","https://openalex.org/W1556859285","https://openalex.org/W1986946139","https://openalex.org/W2000895093","https://openalex.org/W2021905005","https://openalex.org/W2038964548","https://openalex.org/W2055029618","https://openalex.org/W2057751248","https://openalex.org/W2070667928","https://openalex.org/W2088689487"],"related_works":["https://openalex.org/W2627948934","https://openalex.org/W2325715070","https://openalex.org/W1589665208","https://openalex.org/W1969559702","https://openalex.org/W4403679540","https://openalex.org/W2122911411","https://openalex.org/W2106924853","https://openalex.org/W2437054016","https://openalex.org/W1501732583","https://openalex.org/W2106888275"],"abstract_inverted_index":{"Comparative":[0],"analysis":[1],"of":[2,7,18,24,48,52,61,94,103,137,155,190,192,224],"extra-":[3],"and":[4,12,91,100,140],"intracellular":[5],"distributions":[6],"protein":[8],"markers":[9],"in":[10,96,134,202,221],"immunohistochemical":[11],"immunofluorescent":[13],"studies":[14,220],"relies":[15],"on":[16,168],"techniques":[17],"image":[19,47],"analysis.":[20],"Line":[21],"or":[22,188],"region":[23],"interest":[25,62],"pixel":[26,40,113,151,159],"intensity":[27,41,114,152,160],"scans":[28,42,63],"are":[29],"methods":[30],"routinely":[31],"used.":[32],"However,":[33],"although":[34],"having":[35],"good":[36,65],"spatial":[37,70],"resolution,":[38],"linear":[39],"fail":[43],"to":[44,83,121,129,215],"produce":[45],"integral":[46,149],"the":[49,53,56,59,92,104,118,122,130,135,138,157,164,170,177,199,212],"cellular":[50],"distribution":[51],"label.":[54],"On":[55],"other":[57,225],"hand,":[58],"regions":[60],"have":[64,196],"integrative":[66],"capacity":[67],"but":[68],"low":[69],"resolution.":[71],"In":[72,210],"this":[73],"work,":[74],"we":[75],"describe":[76],"a":[77,222],"\"clock-scan\"":[78],"protocol":[79,108,166,201,213],"that,":[80],"when":[81],"applied":[82],"convex":[84],"objects":[85],"(such":[86],"as":[87],"neuronal":[88],"cell":[89,119,131,171,178],"bodies":[90],"majority":[93],"cells":[95],"culture),":[97],"combines":[98],"advantages":[99],"circumnavigates":[101],"limitations":[102],"above-mentioned":[105],"techniques.":[106],"The":[107],"1)":[109],"collects":[110],"multiple":[111],"radial":[112,150],"profiles":[115,127,146,161,191],"scanned":[116],"from":[117],"center":[120],"periphery,":[123],"2)":[124],"scales":[125],"these":[126,144],"according":[128],"radius":[132],"measured":[133],"direction":[136],"scan,":[139],"finally,":[141],"3)":[142],"averages":[143],"individual":[145],"into":[147],"one":[148],"profile.":[153],"Because":[154],"scaling,":[156],"mean":[158],"produced":[162],"by":[163],"clock-scan":[165,200],"depend":[167],"neither":[169],"size":[172],"nor,":[173],"within":[174],"reasonable":[175],"limits,":[176],"shape.":[179],"This":[180],"allows":[181],"direct":[182],"comparison":[183],"or,":[184],"if":[185],"required,":[186],"averaging":[187],"subtraction":[189],"different":[193],"cells.":[194],"We":[195],"successfully":[197],"tested":[198],"experiments":[203],"with":[204],"immunostained":[205],"dorsal":[206],"root":[207],"ganglion":[208],"neurons.":[209],"addition,":[211],"seems":[214],"be":[216],"equally":[217],"applicable":[218],"for":[219],"variety":[223],"preparations.":[226]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2016-06-24T00:00:00"}
