{"id":"https://openalex.org/W2105055862","doi":null,"title":"Comparison of culture and real-time PCR for detection of Bordetella pertussis isolated from patients in Iran.","display_name":"Comparison of culture and real-time PCR for detection of Bordetella pertussis isolated from patients in Iran.","publication_year":2013,"publication_date":"2013-09-01","ids":{"openalex":"https://openalex.org/W2105055862","mag":"2105055862","pmid":"https://pubmed.ncbi.nlm.nih.gov/24475325","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/3895556"},"language":"en","primary_location":{"id":"pmh:oai:europepmc.org:2887852","doi":null,"is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3895556","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://europepmc.org/articles/PMC3895556","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014643643","display_name":"Vajihe Sadat Nikbin","orcid":"https://orcid.org/0000-0002-6540-1003","observed_orcids":["https://orcid.org/0000-0002-6540-1003"]},"institutions":[{"id":"https://openalex.org/I1301411061","display_name":"Pasteur Institute of Iran","ror":"https://ror.org/00wqczk30","country_code":"IR","type":"facility","lineage":["https://openalex.org/I1301411061"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Vajiheh Sadat Nikbin","raw_affiliation_strings":["Pertussis Reference Laboratory, Department of Bacteriology, Pasteur Institute of Iran, Tehran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pertussis Reference Laboratory, Department of Bacteriology, Pasteur Institute of Iran, Tehran","institution_ids":["https://openalex.org/I1301411061"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072839291","display_name":"Fereshteh Shahcheraghi","orcid":"https://orcid.org/0000-0002-8295-1090","observed_orcids":["https://orcid.org/0000-0002-8295-1090","https://orcid.org/0000-0001-5840-5375"]},"institutions":[{"id":"https://openalex.org/I1301411061","display_name":"Pasteur Institute of Iran","ror":"https://ror.org/00wqczk30","country_code":"IR","type":"facility","lineage":["https://openalex.org/I1301411061"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Fereshteh Shahcheraghi","raw_affiliation_strings":["Pertussis Reference Laboratory, Department of Bacteriology, Pasteur Institute of Iran, Tehran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pertussis Reference Laboratory, Department of Bacteriology, Pasteur Institute of Iran, Tehran","institution_ids":["https://openalex.org/I1301411061"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048903919","display_name":"Masoumeh Nakhost Lotfi","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1301411061","display_name":"Pasteur Institute of Iran","ror":"https://ror.org/00wqczk30","country_code":"IR","type":"facility","lineage":["https://openalex.org/I1301411061"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Masoumeh Nakhost Lotfi","raw_affiliation_strings":["Pertussis Reference Laboratory, Department of Bacteriology, Pasteur Institute of Iran, Tehran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pertussis Reference Laboratory, Department of Bacteriology, Pasteur Institute of Iran, Tehran","institution_ids":["https://openalex.org/I1301411061"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021537956","display_name":"Seyed Mohsen Zahraei","orcid":"https://orcid.org/0000-0002-1940-2216","observed_orcids":["https://orcid.org/0000-0002-1940-2216"]},"institutions":[{"id":"https://openalex.org/I4210110574","display_name":"Ministry of Health and Medical Education","ror":"https://ror.org/01rs0ht88","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210110574"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Seyyed Mohsen Zahraei","raw_affiliation_strings":["Center for Disease Control, Ministry of Health and Medical Education, Tehran, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Disease Control, Ministry of Health and Medical Education, Tehran, Iran","institution_ids":["https://openalex.org/I4210110574"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018768736","display_name":"Masoumeh Parzadeh","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1301411061","display_name":"Pasteur Institute of Iran","ror":"https://ror.org/00wqczk30","country_code":"IR","type":"facility","lineage":["https://openalex.org/I1301411061"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Masoumeh Parzadeh","raw_affiliation_strings":["Pertussis Reference Laboratory, Department of Bacteriology, Pasteur Institute of Iran, Tehran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pertussis Reference Laboratory, Department of Bacteriology, Pasteur Institute of Iran, Tehran","institution_ids":["https://openalex.org/I1301411061"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.166,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.84317513,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":87,"max":98},"biblio":{"volume":"5","issue":"3","first_page":"209","last_page":"14"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10873","display_name":"Bacterial Infections and Vaccines","score":0.9717000126838684,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10873","display_name":"Bacterial Infections and Vaccines","score":0.9717000126838684,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12167","display_name":"Bacterial Identification and Susceptibility Testing","score":0.023499999195337296,"subfield":{"id":"https://openalex.org/subfields/2726","display_name":"Microbiology (medical)"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12499","display_name":"Diphtheria, Corynebacterium, and Tetanus","score":0.0015999999595806003,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bordetella-pertussis","display_name":"Bordetella pertussis","score":1.0},{"id":"https://openalex.org/keywords/pertussis-diagnosis","display_name":"pertussis diagnosis","score":0.9879999756813049},{"id":"https://openalex.org/keywords/real-time-pcr","display_name":"real-time PCR","score":0.824999988079071},{"id":"https://openalex.org/keywords/bacterial-culture","display_name":"bacterial culture","score":0.7900000214576721},{"id":"https://openalex.org/keywords/is481","display_name":"IS481","score":0.9459999799728394},{"id":"https://openalex.org/keywords/diagnostic-sensitivity","display_name":"diagnostic sensitivity","score":0.8790000081062317},{"id":"https://openalex.org/keywords/vaccination-status","display_name":"vaccination status","score":0.7049999833106995},{"id":"https://openalex.org/keywords/iran","display_name":"Iran","score":0.6629999876022339}],"concepts":[{"id":"https://openalex.org/C2777582894","wikidata":"https://www.wikidata.org/wiki/Q137103","display_name":"Bordetella pertussis","level":3,"score":0.8425944447517395},{"id":"https://openalex.org/C48023723","wikidata":"https://www.wikidata.org/wiki/Q856198","display_name":"Real-time polymerase chain reaction","level":3,"score":0.7208916544914246},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.5368427038192749},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.5010931491851807},{"id":"https://openalex.org/C761482","wikidata":"https://www.wikidata.org/wiki/Q118093","display_name":"Transmission (telecommunications)","level":2,"score":0.46606260538101196},{"id":"https://openalex.org/C41661131","wikidata":"https://www.wikidata.org/wiki/Q220764","display_name":"Interrupt","level":3,"score":0.4620271325111389},{"id":"https://openalex.org/C2779214499","wikidata":"https://www.wikidata.org/wiki/Q134859","display_name":"Whooping cough","level":3,"score":0.44236665964126587},{"id":"https://openalex.org/C140779682","wikidata":"https://www.wikidata.org/wiki/Q210868","display_name":"Sampling (signal processing)","level":3,"score":0.41270098090171814},{"id":"https://openalex.org/C22070199","wikidata":"https://www.wikidata.org/wiki/Q192995","display_name":"Vaccination","level":2,"score":0.40451779961586},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.399676650762558},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.39428797364234924},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31758829951286316},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1319108009338379},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.11661034822463989},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.08379611372947693},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"pmh:oai:europepmc.org:2887852","doi":null,"is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3895556","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},{"id":"pmid:24475325","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24475325","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Iranian journal of microbiology","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3895556","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC3895556/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Iran J Microbiol","raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.783.6588","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.783.6588","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/cd/75/IJM-5-209.PMC3895556.pdf","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:afbfd46dff344a3b869c58171871bc91","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/afbfd46dff344a3b869c58171871bc91","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Iranian Journal of Microbiology, Vol 5, Iss 3 (2013)","raw_type":"article"},{"id":"mag:2105055862","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24475325","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"PubMed","raw_type":null}],"best_oa_location":{"id":"pmh:oai:europepmc.org:2887852","doi":null,"is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3895556","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},"sustainable_development_goals":[{"score":0.9391000270843506,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"study_designs":[{"id":"https://openalex.org/study-designs/observational-study","display_name":"Observational Study"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W1507072680","https://openalex.org/W1522309498","https://openalex.org/W1557613925","https://openalex.org/W1866797630","https://openalex.org/W1936522747","https://openalex.org/W1963187162","https://openalex.org/W1970188102","https://openalex.org/W1978654535","https://openalex.org/W1988793394","https://openalex.org/W2004436397","https://openalex.org/W2015427377","https://openalex.org/W2015901073","https://openalex.org/W2041571247","https://openalex.org/W2069228310","https://openalex.org/W2087429774","https://openalex.org/W2094717002","https://openalex.org/W2096170796","https://openalex.org/W2104608219","https://openalex.org/W2105123212","https://openalex.org/W2108198236","https://openalex.org/W2111914400","https://openalex.org/W2119016258","https://openalex.org/W2120919836","https://openalex.org/W2125459952","https://openalex.org/W2131407439","https://openalex.org/W2133211243","https://openalex.org/W2134479664","https://openalex.org/W2138147635","https://openalex.org/W2139180895","https://openalex.org/W2141010070","https://openalex.org/W2144510009","https://openalex.org/W2147401141","https://openalex.org/W2152139919","https://openalex.org/W2153138695","https://openalex.org/W2153322102","https://openalex.org/W2155125478","https://openalex.org/W2155534524","https://openalex.org/W2157174482","https://openalex.org/W2161432462"],"related_works":["https://openalex.org/W1980741999","https://openalex.org/W2116404534","https://openalex.org/W2168192613","https://openalex.org/W2059245842","https://openalex.org/W2046962649","https://openalex.org/W2299220077","https://openalex.org/W7221090018","https://openalex.org/W3215931900","https://openalex.org/W7096664267","https://openalex.org/W1936522747"],"abstract_inverted_index":{"BACKGROUND":[0],"AND":[1,26],"OBJECTIVE:":[2],"Due":[3],"to":[4,17],"contagiousness":[5],"of":[6,94,102,120,139],"pertussis,":[7],"a":[8],"rapid":[9],"and":[10,21,40,43,48,69,74,97,100,112,131,137],"sensitive":[11,115],"method":[12,91],"for":[13,92,118],"diagnosis":[14,93,119],"is":[15,110],"required":[16],"initiate":[18],"the":[19,88,124,143],"treatment":[20],"interrupt":[22],"its":[23],"transmission.":[24],"MATERIALS":[25],"METHODS:":[27],"To":[28],"detect":[29],"B.":[30,95,121],"pertussis":[31,96],"strains,":[32],"we":[33],"used":[34],"two":[35],"real-time":[36,49,89,108],"PCR":[37,50,90,109],"targeting":[38],"IS481":[39,68,130],"BP283":[41,70,132],"sequences":[42],"compared":[44],"factors":[45],"influencing":[46],"culture":[47,65,117],"results.":[51],"RESULTS:":[52],"Totally,":[53],"779":[54],"specimens":[55,81],"were":[56,64,77,84,133],"collected":[57],"from":[58],"patients":[59,103],"among":[60],"which":[61],"11":[62],"(1.4%)":[63],"positive.":[66],"Using":[67],"primers,":[71],"122":[72],"(15.6%)":[73],"100":[75],"(12.8%)":[76],"diagnosed":[78],"as":[79],"infected":[80],"respectively.":[82],"There":[83],"significant":[85],"relationships":[86],"between":[87],"age,":[98],"sex":[99],"vaccination":[101],"before":[104],"sampling.":[105],"CONCLUSION:":[106],"The":[107],"superior":[111],"much":[113],"more":[114],"than":[116],"pertussis.":[122],"However,":[123],"sensitivity":[125],"was":[126],"improved":[127,142],"when":[128],"both":[129],"used.":[134],"Correct":[135],"sampling":[136],"transportation":[138],"specimen":[140],"also":[141],"detection":[144],"rate":[145],"in":[146],"our":[147],"research.":[148]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":1}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2016-06-24T00:00:00"}