{"id":"https://openalex.org/W2103381667","doi":"https://doi.org/10.1186/gb-2006-7-8-r71","title":"Zebrafish promoter microarrays identify actively transcribed embryonic genes","display_name":"Zebrafish promoter microarrays identify actively transcribed embryonic genes","publication_year":2006,"publication_date":"2006-08-04","ids":{"openalex":"https://openalex.org/W2103381667","doi":"https://doi.org/10.1186/gb-2006-7-8-r71","mag":"2103381667","pmid":"https://pubmed.ncbi.nlm.nih.gov/16889661","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/1779600"},"language":"en","primary_location":{"id":"doi:10.1186/gb-2006-7-8-r71","doi":"https://doi.org/10.1186/gb-2006-7-8-r71","is_oa":true,"landing_page_url":"https://doi.org/10.1186/gb-2006-7-8-r71","pdf_url":"https://genomebiology.biomedcentral.com/counter/pdf/10.1186/gb-2006-7-8-r71","source":{"id":"https://openalex.org/S81160022","display_name":"Genome biology","issn_l":"1465-6906","issn":["1465-6906","1465-6914","1474-7596","1474-760X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Biology","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://genomebiology.biomedcentral.com/counter/pdf/10.1186/gb-2006-7-8-r71","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071423784","display_name":"Fiona C. Wardle","orcid":"https://orcid.org/0000-0001-5444-1889","observed_orcids":["https://orcid.org/0000-0001-5444-1889"]},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I2801782436","display_name":"The Gurdon Institute","ror":"https://ror.org/00fp3ce15","country_code":"GB","type":"facility","lineage":["https://openalex.org/I241749","https://openalex.org/I2801316944","https://openalex.org/I2801782436","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Fiona C Wardle","raw_affiliation_strings":["Wellcome Trust/Cancer Research UK Gurdon Institute and Department of Zoology, Cambridge University, Cambridge, UK. fcw27@cam.ac.uk","Wellcome Trust/Cancer Research UK Gurdon Institute and Department of Zoology, Cambridge University, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome Trust/Cancer Research UK Gurdon Institute and Department of Zoology, Cambridge University, Cambridge, UK. fcw27@cam.ac.uk","institution_ids":["https://openalex.org/I241749","https://openalex.org/I2801782436"]},{"raw_affiliation_string":"Wellcome Trust/Cancer Research UK Gurdon Institute and Department of Zoology, Cambridge University, Cambridge, UK","institution_ids":["https://openalex.org/I241749","https://openalex.org/I2801782436","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056137343","display_name":"Duncan T. Odom","orcid":"https://orcid.org/0000-0001-6201-5599","observed_orcids":["https://orcid.org/0000-0001-6201-5599"]},"institutions":[{"id":"https://openalex.org/I4210157710","display_name":"Whitehead Institute for Biomedical Research","ror":"https://ror.org/04vqm6w82","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210157710","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Duncan T Odom","raw_affiliation_strings":["Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, MA, 02142, USA","Whitehead Institute for Biomedical Research, Nine Cambridge Center,Cambridge,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, MA, 02142, USA","institution_ids":["https://openalex.org/I4210157710"]},{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Nine Cambridge Center,Cambridge,USA","institution_ids":["https://openalex.org/I4210157710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067029691","display_name":"George W. Bell","orcid":"https://orcid.org/0000-0001-6826-2507","observed_orcids":["https://orcid.org/0000-0001-6826-2507"]},"institutions":[{"id":"https://openalex.org/I4210157710","display_name":"Whitehead Institute for Biomedical Research","ror":"https://ror.org/04vqm6w82","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210157710","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"George W Bell","raw_affiliation_strings":["Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, MA, 02142, USA","Whitehead Institute for Biomedical Research, Nine Cambridge Center,Cambridge,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, MA, 02142, USA","institution_ids":["https://openalex.org/I4210157710"]},{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Nine Cambridge Center,Cambridge,USA","institution_ids":["https://openalex.org/I4210157710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102719062","display_name":"Bingbing Yuan","orcid":"https://orcid.org/0000-0002-8460-5124","observed_orcids":["https://orcid.org/0000-0002-8460-5124"]},"institutions":[{"id":"https://openalex.org/I4210157710","display_name":"Whitehead Institute for Biomedical Research","ror":"https://ror.org/04vqm6w82","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210157710","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bingbing Yuan","raw_affiliation_strings":["Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, MA, 02142, USA","Whitehead Institute for Biomedical Research, Nine Cambridge Center,Cambridge,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, MA, 02142, USA","institution_ids":["https://openalex.org/I4210157710"]},{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Nine Cambridge Center,Cambridge,USA","institution_ids":["https://openalex.org/I4210157710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033738984","display_name":"Timothy Danford","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4405258931","display_name":"MIT Computer Science and Artificial Intelligence Laboratory","ror":"https://ror.org/01e85r662","country_code":"US","type":"facility","lineage":["https://openalex.org/I4405258931","https://openalex.org/I63966007"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Timothy W Danford","raw_affiliation_strings":["Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Vassar Street, Cambridge, MA, 02139, USA","Computer Science and Artificial, Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Vassar Street, Cambridge, MA, 02139, USA","institution_ids":["https://openalex.org/I4405258931","https://openalex.org/I63966007"]},{"raw_affiliation_string":"Computer Science and Artificial, Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, USA","institution_ids":["https://openalex.org/I4405258931","https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026385127","display_name":"Elizabeth L. Wiellette","orcid":"https://orcid.org/0009-0005-8002-1585","observed_orcids":["https://orcid.org/0009-0005-8002-1585"]},"institutions":[{"id":"https://openalex.org/I4210157710","display_name":"Whitehead Institute for Biomedical Research","ror":"https://ror.org/04vqm6w82","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210157710","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elizabeth L Wiellette","raw_affiliation_strings":["Novartis Institutes for Biomedical Research, Mass Ave, Cambridge, MA, 02139, USA","Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, MA, 02142, USA","Novartis Institutes for Biomedical Research, Cambridge, USA","Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Novartis Institutes for Biomedical Research, Mass Ave, Cambridge, MA, 02139, USA","institution_ids":[]},{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, MA, 02142, USA","institution_ids":["https://openalex.org/I4210157710"]},{"raw_affiliation_string":"Novartis Institutes for Biomedical Research, Cambridge, USA","institution_ids":[]},{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, USA","institution_ids":["https://openalex.org/I4210157710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020531079","display_name":"Elizabeth Herbolsheimer","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210157710","display_name":"Whitehead Institute for Biomedical Research","ror":"https://ror.org/04vqm6w82","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210157710","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elizabeth Herbolsheimer","raw_affiliation_strings":["Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, MA, 02142, USA","Whitehead Institute for Biomedical Research, Nine Cambridge Center,Cambridge,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, MA, 02142, USA","institution_ids":["https://openalex.org/I4210157710"]},{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Nine Cambridge Center,Cambridge,USA","institution_ids":["https://openalex.org/I4210157710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043206263","display_name":"Hazel L. Sive","orcid":"https://orcid.org/0000-0002-4890-424X","observed_orcids":["https://orcid.org/0000-0002-4890-424X"]},"institutions":[{"id":"https://openalex.org/I4210157710","display_name":"Whitehead Institute for Biomedical Research","ror":"https://ror.org/04vqm6w82","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210157710","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hazel L Sive","raw_affiliation_strings":["Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, MA, 02142, USA","Whitehead Institute for Biomedical Research, Nine Cambridge Center,Cambridge,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, MA, 02142, USA","institution_ids":["https://openalex.org/I4210157710"]},{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Nine Cambridge Center,Cambridge,USA","institution_ids":["https://openalex.org/I4210157710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112460504","display_name":"Richard A. Young","orcid":"https://orcid.org/0000-0001-8855-8647","observed_orcids":["https://orcid.org/0000-0001-8855-8647"]},"institutions":[{"id":"https://openalex.org/I4210157710","display_name":"Whitehead Institute for Biomedical Research","ror":"https://ror.org/04vqm6w82","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210157710","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard A Young","raw_affiliation_strings":["Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, MA, 02142, USA","Whitehead Institute for Biomedical Research, Nine Cambridge Center,Cambridge,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Nine Cambridge Center, Cambridge, MA, 02142, USA","institution_ids":["https://openalex.org/I4210157710"]},{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Nine Cambridge Center,Cambridge,USA","institution_ids":["https://openalex.org/I4210157710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044946533","display_name":"James C. Smith","orcid":"https://orcid.org/0000-0003-2413-9392","observed_orcids":["https://orcid.org/0000-0003-2413-9392"]},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I2801782436","display_name":"The Gurdon Institute","ror":"https://ror.org/00fp3ce15","country_code":"GB","type":"facility","lineage":["https://openalex.org/I241749","https://openalex.org/I2801316944","https://openalex.org/I2801782436","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James C Smith","raw_affiliation_strings":["Wellcome Trust/Cancer Research UK Gurdon Institute and Department of Zoology, Cambridge University, Cambridge, CB2 1QN, UK","Wellcome Trust/Cancer Research UK Gurdon Institute and Department of Zoology, Cambridge University, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome Trust/Cancer Research UK Gurdon Institute and Department of Zoology, Cambridge University, Cambridge, CB2 1QN, UK","institution_ids":["https://openalex.org/I241749","https://openalex.org/I2801782436"]},{"raw_affiliation_string":"Wellcome Trust/Cancer Research UK Gurdon Institute and Department of Zoology, Cambridge University, Cambridge, UK","institution_ids":["https://openalex.org/I241749","https://openalex.org/I2801782436","https://openalex.org/I87048295"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5071423784"],"corresponding_institution_ids":["https://openalex.org/I241749","https://openalex.org/I2801782436","https://openalex.org/I87048295"],"apc_list":{"value":5490,"currency":"USD","value_usd":5490},"apc_paid":{"value":5490,"currency":"USD","value_usd":5490},"fwci":2.82,"has_fulltext":true,"cited_by_count":87,"citation_normalized_percentile":{"value":0.90423447,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":99},"biblio":{"volume":"7","issue":"8","first_page":"R71","last_page":"R71"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9726999998092651,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9726999998092651,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10268","display_name":"Developmental Biology and Gene Regulation","score":0.004399999976158142,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11685","display_name":"Zebrafish Biomedical Research Applications","score":0.004000000189989805,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/zebrafish","display_name":"zebrafish","score":0.9229999780654907},{"id":"https://openalex.org/keywords/proximal-promoter","display_name":"proximal promoter","score":0.628000020980835},{"id":"https://openalex.org/keywords/protein-dna-interactions","display_name":"protein-DNA interactions","score":0.8600000143051147},{"id":"https://openalex.org/keywords/h3k4-trimethylation","display_name":"H3K4 trimethylation","score":0.871999979019165},{"id":"https://openalex.org/keywords/chromatin-immunoprecipitation","display_name":"chromatin immunoprecipitation","score":0.9269999861717224},{"id":"https://openalex.org/keywords/embryonic-gene-expression","display_name":"embryonic gene expression","score":0.8230000138282776},{"id":"https://openalex.org/keywords/transcriptional-regulation","display_name":"transcriptional regulation","score":0.7039999961853027},{"id":"https://openalex.org/keywords/embryonic-development","display_name":"embryonic development","score":0.7549999952316284},{"id":"https://openalex.org/keywords/developmental-gene-networks","display_name":"developmental gene networks","score":0.4880000054836273}],"concepts":[{"id":"https://openalex.org/C2776878037","wikidata":"https://www.wikidata.org/wiki/Q169444","display_name":"Zebrafish","level":3,"score":0.8849149942398071},{"id":"https://openalex.org/C134320426","wikidata":"https://www.wikidata.org/wiki/Q901026","display_name":"Chromatin immunoprecipitation","level":5,"score":0.8165057301521301},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6638913154602051},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.6062623858451843},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.5895495414733887},{"id":"https://openalex.org/C64927066","wikidata":"https://www.wikidata.org/wiki/Q36293","display_name":"Histone","level":3,"score":0.581530749797821},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5713616609573364},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5061585307121277},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46868398785591125},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.46155521273612976},{"id":"https://openalex.org/C17757408","wikidata":"https://www.wikidata.org/wiki/Q4135516","display_name":"genomic DNA","level":3,"score":0.44267743825912476},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.3623352646827698},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.19370728731155396}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004625","descriptor_name":"Embryo, Nonmammalian","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D004625","descriptor_name":"Embryo, Nonmammalian","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":true},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018507","descriptor_name":"Gene Expression Regulation, Developmental","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020133","descriptor_name":"Reverse Transcriptase Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/gb-2006-7-8-r71","doi":"https://doi.org/10.1186/gb-2006-7-8-r71","is_oa":true,"landing_page_url":"https://doi.org/10.1186/gb-2006-7-8-r71","pdf_url":"https://genomebiology.biomedcentral.com/counter/pdf/10.1186/gb-2006-7-8-r71","source":{"id":"https://openalex.org/S81160022","display_name":"Genome biology","issn_l":"1465-6906","issn":["1465-6906","1465-6914","1474-7596","1474-760X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Biology","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1779600","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1779600","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Biol","raw_type":"Text"},{"id":"pmid:16889661","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16889661","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome biology","raw_type":"Comparative Study"},{"id":"pmh:oai:www.repository.cam.ac.uk:1810/238234","doi":null,"is_oa":true,"landing_page_url":"http://www.dspace.cam.ac.uk/handle/1810/238234","pdf_url":"http://www.dspace.cam.ac.uk/handle/1810/238234","source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:dspace.mit.edu:1721.1/58880","doi":null,"is_oa":true,"landing_page_url":"http://hdl.handle.net/1721.1/58880","pdf_url":null,"source":{"id":"https://openalex.org/S4306400425","display_name":"DSpace@MIT (Massachusetts Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I63966007","host_organization_name":"Massachusetts Institute of Technology","host_organization_lineage":["https://openalex.org/I63966007"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BioMed Central Ltd","raw_type":"Article"},{"id":"pmh:oai:kclpure.kcl.ac.uk:publications/7164d74d-b53c-4146-94ac-640cdac77a7d","doi":null,"is_oa":false,"landing_page_url":"https://kclpure.kcl.ac.uk/portal/en/publications/7164d74d-b53c-4146-94ac-640cdac77a7d","pdf_url":null,"source":{"id":"https://openalex.org/S4306400216","display_name":"Research Portal (King's College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I183935753","host_organization_name":"King's College London","host_organization_lineage":["https://openalex.org/I183935753"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Wardle, F C & Smith, J C 2006, 'Transcriptional regulation of mesendoderm formation in Xenopus', Seminars in Cell and Developmental Biology, vol. 17, no. 1, R71, pp. 99 - 109. https://doi.org/10.1186/gb-2006-7-8-r71","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1186/gb-2006-7-8-r71","doi":"https://doi.org/10.1186/gb-2006-7-8-r71","is_oa":true,"landing_page_url":"https://doi.org/10.1186/gb-2006-7-8-r71","pdf_url":"https://genomebiology.biomedcentral.com/counter/pdf/10.1186/gb-2006-7-8-r71","source":{"id":"https://openalex.org/S81160022","display_name":"Genome biology","issn_l":"1465-6906","issn":["1465-6906","1465-6914","1474-7596","1474-760X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1436339674","display_name":null,"funder_award_id":"HG002668","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G2300755339","display_name":"Insulin Regulators and Control of Islet Transcription","funder_award_id":"K25DK070813","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"},{"id":"https://openalex.org/G2554189167","display_name":null,"funder_award_id":"DK070813","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"},{"id":"https://openalex.org/G3464757490","display_name":"ZEBRAFISH NEUROGENESIS-- EMBRYOLOGY AND GENETICS","funder_award_id":"R01MH059942","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G5604671103","display_name":"ANTEROPOSTERIOR ECTODERMAL PATTERNING IN XENOPUS","funder_award_id":"R01HD033472","funder_id":"https://openalex.org/F4320337611","funder_display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development"},{"id":"https://openalex.org/G6086781597","display_name":"Transcriptional Regulatory Networks in Living Cells","funder_award_id":"R01HG002668","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"},{"id":"https://openalex.org/F4320337611","display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2103381667.pdf","grobid_xml":"https://content.openalex.org/works/W2103381667.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W187269661","https://openalex.org/W1495901582","https://openalex.org/W1508413329","https://openalex.org/W1888475523","https://openalex.org/W1913145210","https://openalex.org/W1966517214","https://openalex.org/W1967074502","https://openalex.org/W1968931043","https://openalex.org/W1974723367","https://openalex.org/W1981069016","https://openalex.org/W2007684630","https://openalex.org/W2016714497","https://openalex.org/W2021292600","https://openalex.org/W2022936129","https://openalex.org/W2026379952","https://openalex.org/W2026882865","https://openalex.org/W2030523067","https://openalex.org/W2032736838","https://openalex.org/W2056425488","https://openalex.org/W2059831977","https://openalex.org/W2063928917","https://openalex.org/W2065285343","https://openalex.org/W2070359888","https://openalex.org/W2071278881","https://openalex.org/W2072320653","https://openalex.org/W2073506826","https://openalex.org/W2077132193","https://openalex.org/W2080498142","https://openalex.org/W2085307258","https://openalex.org/W2095008230","https://openalex.org/W2097036575","https://openalex.org/W2101706357","https://openalex.org/W2103302926","https://openalex.org/W2107575419","https://openalex.org/W2110438893","https://openalex.org/W2115591173","https://openalex.org/W2120006551","https://openalex.org/W2123938765","https://openalex.org/W2124386744","https://openalex.org/W2126602684","https://openalex.org/W2127906347","https://openalex.org/W2132285289","https://openalex.org/W2132531056","https://openalex.org/W2132956628","https://openalex.org/W2135852310","https://openalex.org/W2139025111","https://openalex.org/W2146264532","https://openalex.org/W2148944713","https://openalex.org/W2158610627","https://openalex.org/W2159534153","https://openalex.org/W2162316859"],"related_works":["https://openalex.org/W1983582433","https://openalex.org/W2071278881","https://openalex.org/W2012154560","https://openalex.org/W2026379952","https://openalex.org/W1975690799","https://openalex.org/W2071569137","https://openalex.org/W2015675681","https://openalex.org/W2419641351","https://openalex.org/W4310082265","https://openalex.org/W7099207990"],"abstract_inverted_index":{"We":[0],"have":[1],"designed":[2],"a":[3],"zebrafish":[4,19],"genomic":[5,56],"microarray":[6],"to":[7,53],"identify":[8],"DNA-protein":[9],"interactions":[10],"in":[11,46],"the":[12,41,55,67,70],"proximal":[13],"promoter":[14],"regions":[15],"of":[16,36,43,59,69],"over":[17],"11,000":[18],"genes.":[20],"Using":[21],"these":[22],"microarrays,":[23],"together":[24],"with":[25,28],"chromatin":[26],"immunoprecipitation":[27],"an":[29],"antibody":[30],"directed":[31],"against":[32],"tri-methylated":[33],"lysine":[34],"4":[35],"Histone":[37],"H3,":[38],"we":[39],"demonstrate":[40],"feasibility":[42],"this":[44],"method":[45],"zebrafish.":[47],"This":[48],"approach":[49],"will":[50],"allow":[51],"investigators":[52],"determine":[54],"binding":[57],"locations":[58],"DNA":[60],"interacting":[61],"proteins":[62],"during":[63],"development":[64],"and":[65],"expedite":[66],"assembly":[68],"genetic":[71],"networks":[72],"that":[73],"regulate":[74],"embryogenesis.":[75]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":9},{"year":2012,"cited_by_count":9}],"updated_date":"2026-11-01T11:40:01.658920","created_date":"2016-06-24T00:00:00"}