{"id":"https://openalex.org/W2098960663","doi":"https://doi.org/10.1099/ijs.0.63934-0","title":"Ochrobactrum oryzae sp. nov., an endophytic bacterial species isolated from deep-water rice in India","display_name":"Ochrobactrum oryzae sp. nov., an endophytic bacterial species isolated from deep-water rice in India","publication_year":2006,"publication_date":"2006-07-01","ids":{"openalex":"https://openalex.org/W2098960663","doi":"https://doi.org/10.1099/ijs.0.63934-0","mag":"2098960663","pmid":"https://pubmed.ncbi.nlm.nih.gov/16825649"},"language":"en","primary_location":{"id":"doi:10.1099/ijs.0.63934-0","doi":"https://doi.org/10.1099/ijs.0.63934-0","is_oa":false,"landing_page_url":"https://doi.org/10.1099/ijs.0.63934-0","pdf_url":null,"source":{"id":"https://openalex.org/S102181007","display_name":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","issn_l":"1466-5026","issn":["1466-5026","1466-5034"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-3","vabb-shw"],"host_organization":"https://openalex.org/P4310320497","host_organization_name":"Microbiology Society","host_organization_lineage":["https://openalex.org/P4310320497"],"host_organization_lineage_names":["Microbiology Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Systematic and Evolutionary Microbiology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046961815","display_name":"Anil Kumar Tripathi","orcid":"https://orcid.org/0000-0001-5662-3344","observed_orcids":["https://orcid.org/0000-0001-5662-3344"]},"institutions":[{"id":"https://openalex.org/I91357014","display_name":"Banaras Hindu University","ror":"https://ror.org/04cdn2797","country_code":"IN","type":"education","lineage":["https://openalex.org/I91357014"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Anil K. Tripathi","raw_affiliation_strings":["School of Biotechnology, Faculty of Science, Banaras Hindu University, Varanasi \u2013 221005, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biotechnology, Faculty of Science, Banaras Hindu University, Varanasi \u2013 221005, India","institution_ids":["https://openalex.org/I91357014"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079619393","display_name":"Subhash Chandra Verma","orcid":"https://orcid.org/0000-0001-9708-4500","observed_orcids":["https://orcid.org/0000-0001-9708-4500"]},"institutions":[{"id":"https://openalex.org/I91357014","display_name":"Banaras Hindu University","ror":"https://ror.org/04cdn2797","country_code":"IN","type":"education","lineage":["https://openalex.org/I91357014"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Subhash C. Verma","raw_affiliation_strings":["School of Biotechnology, Faculty of Science, Banaras Hindu University, Varanasi \u2013 221005, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biotechnology, Faculty of Science, Banaras Hindu University, Varanasi \u2013 221005, India","institution_ids":["https://openalex.org/I91357014"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024671720","display_name":"Soumitra Paul Chowdhury","orcid":"https://orcid.org/0000-0002-8576-8857","observed_orcids":["https://orcid.org/0000-0002-8576-8857"]},"institutions":[{"id":"https://openalex.org/I91357014","display_name":"Banaras Hindu University","ror":"https://ror.org/04cdn2797","country_code":"IN","type":"education","lineage":["https://openalex.org/I91357014"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Soumitra Paul Chowdhury","raw_affiliation_strings":["School of Biotechnology, Faculty of Science, Banaras Hindu University, Varanasi \u2013 221005, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biotechnology, Faculty of Science, Banaras Hindu University, Varanasi \u2013 221005, India","institution_ids":["https://openalex.org/I91357014"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091174821","display_name":"Michael Lebuhn","orcid":"https://orcid.org/0000-0001-9889-8688","observed_orcids":["https://orcid.org/0000-0001-9889-8688"]},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Lebuhn","raw_affiliation_strings":["Institute of Water Quality Control and Waste Management, Technical University of Munich, Am Coulombwall, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Water Quality Control and Waste Management, Technical University of Munich, Am Coulombwall, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049080198","display_name":"Andreas Gattinger","orcid":"https://orcid.org/0000-0003-2236-6460","observed_orcids":["https://orcid.org/0000-0003-2236-6460"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Andreas Gattinger","raw_affiliation_strings":["GSF\u2013National Centre for Environment and Health, Institute of Soil Ecology, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"GSF\u2013National Centre for Environment and Health, Institute of Soil Ecology, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028119014","display_name":"Michael Schloter","orcid":"https://orcid.org/0000-0003-1671-1125","observed_orcids":["https://orcid.org/0000-0003-1671-1125"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Michael Schloter","raw_affiliation_strings":["GSF\u2013National Centre for Environment and Health, Institute of Soil Ecology, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"GSF\u2013National Centre for Environment and Health, Institute of Soil Ecology, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":9.8031,"has_fulltext":false,"cited_by_count":73,"citation_normalized_percentile":{"value":0.9806355,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":87,"max":99},"biblio":{"volume":"56","issue":"7","first_page":"1677","last_page":"1680"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.6122999787330627,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.6122999787330627,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.17249999940395355,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.07819999754428864,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/novel-bacterial-species","display_name":"novel bacterial species","score":0.9539999961853027}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8737587928771973},{"id":"https://openalex.org/C42062724","wikidata":"https://www.wikidata.org/wiki/Q1209205","display_name":"16S ribosomal RNA","level":3,"score":0.7729264497756958},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.6263969540596008},{"id":"https://openalex.org/C2778543611","wikidata":"https://www.wikidata.org/wiki/Q161426","display_name":"Oryza sativa","level":3,"score":0.5624701380729675},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.5172367691993713},{"id":"https://openalex.org/C2778022156","wikidata":"https://www.wikidata.org/wiki/Q576145","display_name":"Strain (injury)","level":2,"score":0.4712814688682556},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.4652484357357025},{"id":"https://openalex.org/C67905577","wikidata":"https://www.wikidata.org/wiki/Q215980","display_name":"Ribosomal RNA","level":3,"score":0.46266674995422363},{"id":"https://openalex.org/C31903555","wikidata":"https://www.wikidata.org/wiki/Q1637030","display_name":"Food science","level":1,"score":0.3449656367301941},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.23957601189613342},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.13564592599868774},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07554993033409119},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002264","descriptor_name":"Carboxylic Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002473","descriptor_name":"Cell Wall","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004275","descriptor_name":"DNA, Ribosomal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004275","descriptor_name":"DNA, Ribosomal","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005227","descriptor_name":"Fatty Acids","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D005227","descriptor_name":"Fatty Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007194","descriptor_name":"India","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009693","descriptor_name":"Nucleic Acid Hybridization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014871","descriptor_name":"Water Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D042041","descriptor_name":"Ochrobactrum","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D042041","descriptor_name":"Ochrobactrum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D042041","descriptor_name":"Ochrobactrum","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D042041","descriptor_name":"Ochrobactrum","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D050260","descriptor_name":"Carbohydrate Metabolism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1099/ijs.0.63934-0","doi":"https://doi.org/10.1099/ijs.0.63934-0","is_oa":false,"landing_page_url":"https://doi.org/10.1099/ijs.0.63934-0","pdf_url":null,"source":{"id":"https://openalex.org/S102181007","display_name":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","issn_l":"1466-5026","issn":["1466-5026","1466-5034"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-3","vabb-shw"],"host_organization":"https://openalex.org/P4310320497","host_organization_name":"Microbiology Society","host_organization_lineage":["https://openalex.org/P4310320497"],"host_organization_lineage_names":["Microbiology Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Systematic and Evolutionary Microbiology","raw_type":"journal-article"},{"id":"pmid:16825649","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16825649","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International journal of systematic and evolutionary microbiology","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.545.5781","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.545.5781","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://ijsb.sgmjournals.org/content/56/7/1677.full.pdf","raw_type":"text"},{"id":"pmh:oai:opus-zb.helmholtz-muenchen.de:5226","doi":null,"is_oa":false,"landing_page_url":"https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=5226","pdf_url":null,"source":{"id":"https://openalex.org/S4377196115","display_name":"Site cant be reached","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Int. J. Syst. Evol. Microbiol. 56, 1677-1680 (2006)","raw_type":"article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.7982000112533569,"id":"https://metadata.un.org/sdg/2"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W219687505","https://openalex.org/W1482980385","https://openalex.org/W1886645152","https://openalex.org/W1974722542","https://openalex.org/W1994753577","https://openalex.org/W2011387763","https://openalex.org/W2022908268","https://openalex.org/W2033658175","https://openalex.org/W2054591517","https://openalex.org/W2066701824","https://openalex.org/W2083285952","https://openalex.org/W2137697038","https://openalex.org/W2149916824","https://openalex.org/W2153739760","https://openalex.org/W2163116750","https://openalex.org/W2167355441","https://openalex.org/W2608351237","https://openalex.org/W4243553345"],"related_works":["https://openalex.org/W7100586075","https://openalex.org/W2175275992","https://openalex.org/W2593340954","https://openalex.org/W2613811127","https://openalex.org/W2517676873","https://openalex.org/W1803094495","https://openalex.org/W2160635625","https://openalex.org/W2101008043","https://openalex.org/W2753009544","https://openalex.org/W3197238043"],"abstract_inverted_index":{"A":[0],"non-pigmented,":[1],"motile,":[2],"Gram-negative":[3],"bacterium":[4],"designated":[5],"MTCC":[6,52,62,88,167],"4195(T)":[7,53,63,89,168],"was":[8,31,54],"isolated":[9],"from":[10,16],"surface-sterilized":[11],"seeds":[12],"and":[13,35,70,104,145,148],"plant":[14],"tissue":[15],"deep-water":[17,37],"rice":[18,38],"(Oryza":[19],"sativa)":[20],"cultivated":[21],"in":[22,26,113],"Suraha":[23],"Tal":[24],"Lake":[25],"northern":[27],"India.":[28],"This":[29],"isolate":[30],"shown":[32,55],"to":[33,50,77],"reinfect":[34],"colonize":[36],"endophytically.":[39],"The":[40,82],"highest":[41],"level":[42],"of":[43,86,95,100,109,130,133,136,143,151],"16S":[44,152],"rRNA":[45,153],"sequence":[46,155],"similarity":[47],"(96.8":[48],"%)":[49],"strain":[51,87],"by":[56,92],"Ochrobactrum":[57,116,160],"gallinifaecis":[58],"DSM":[59],"15295(T).":[60],"Strain":[61],"utilized":[64],"gamma-hydroxybutyric":[65],"acid,":[66],"adonitol,":[67],"d-glucosaminic":[68],"acid":[69],"arabinose":[71],"as":[72,171],"carbon":[73],"sources,":[74],"but":[75],"failed":[76],"use":[78],"gentiobiose":[79],"or":[80],"citrate.":[81],"cell-wall":[83],"fatty":[84],"acids":[85],"were":[90],"characterized":[91],"the":[93,128,137,141,149,157,172],"presence":[94],"a":[96,105],"relatively":[97],"large":[98],"proportion":[99,108],"C(18":[101],":":[102,111],"1)omega7c":[103],"relative":[106],"small":[107],"C(16":[110],"0)":[112],"comparison":[114],"with":[115,127,166],"species.":[117],"DNA-DNA":[118],"relatedness":[119],"studies":[120],"showed":[121],"less":[122],"than":[123],"52":[124],"%":[125],"binding":[126],"DNAs":[129],"type":[131,173],"strains":[132],"other":[134],"species":[135,159],"genus":[138],"Ochrobactrum.":[139],"On":[140],"basis":[142],"phenotypic":[144],"genotypic":[146],"characteristics":[147],"results":[150],"gene":[154],"analysis,":[156],"novel":[158],"oryzae":[161],"sp.":[162],"nov.":[163],"is":[164],"proposed,":[165],"(=DSM":[169],"17471(T))":[170],"strain.":[174]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2016-06-24T00:00:00"}
