{"id":"https://openalex.org/W2098899208","doi":"https://doi.org/10.1128/jcm.01393-07","title":"Validation of Nasopharyngeal Sampling and Culture Techniques for Detection of Streptococcus pneumoniae in Children in Kenya","display_name":"Validation of Nasopharyngeal Sampling and Culture Techniques for Detection of Streptococcus pneumoniae in Children in Kenya","publication_year":2007,"publication_date":"2007-08-16","ids":{"openalex":"https://openalex.org/W2098899208","doi":"https://doi.org/10.1128/jcm.01393-07","mag":"2098899208","pmid":"https://pubmed.ncbi.nlm.nih.gov/17699645"},"language":"en","primary_location":{"id":"doi:10.1128/jcm.01393-07","doi":"https://doi.org/10.1128/jcm.01393-07","is_oa":false,"landing_page_url":"https://doi.org/10.1128/jcm.01393-07","pdf_url":null,"source":{"id":"https://openalex.org/S53087977","display_name":"Journal of Clinical Microbiology","issn_l":"0095-1137","issn":["0095-1137","1070-633X","1098-660X"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-2","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Microbiology","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2045369","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086802305","display_name":"Osman Abdikarim Abdullahi","orcid":"https://orcid.org/0000-0001-5003-2973","observed_orcids":["https://orcid.org/0000-0001-5003-2973"]},"institutions":[{"id":"https://openalex.org/I2841861","display_name":"Kenya Medical Research Institute","ror":"https://ror.org/04r1cxt79","country_code":"KE","type":"facility","lineage":["https://openalex.org/I2841861","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I4405267625","display_name":"KEMRI-Wellcome Trust Research Programme","ror":"https://ror.org/03my81p15","country_code":"KE","type":"facility","lineage":["https://openalex.org/I4405267625"]}],"countries":["KE"],"is_corresponding":true,"raw_author_name":"Osman Abdullahi","raw_affiliation_strings":["Kenya Medical Research Institute/Wellcome Trust Research Program, Centre for Geographic Medicine Research\u2014Coast, Kilifi, Kenya"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kenya Medical Research Institute/Wellcome Trust Research Program, Centre for Geographic Medicine Research\u2014Coast, Kilifi, Kenya","institution_ids":["https://openalex.org/I2841861","https://openalex.org/I4405267625"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088874023","display_name":"Eva Wanjiru","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I2841861","display_name":"Kenya Medical Research Institute","ror":"https://ror.org/04r1cxt79","country_code":"KE","type":"facility","lineage":["https://openalex.org/I2841861","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I4405267625","display_name":"KEMRI-Wellcome Trust Research Programme","ror":"https://ror.org/03my81p15","country_code":"KE","type":"facility","lineage":["https://openalex.org/I4405267625"]}],"countries":["KE"],"is_corresponding":false,"raw_author_name":"Eva Wanjiru","raw_affiliation_strings":["Kenya Medical Research Institute/Wellcome Trust Research Program, Centre for Geographic Medicine Research\u2014Coast, Kilifi, Kenya"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kenya Medical Research Institute/Wellcome Trust Research Program, Centre for Geographic Medicine Research\u2014Coast, Kilifi, Kenya","institution_ids":["https://openalex.org/I2841861","https://openalex.org/I4405267625"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017887775","display_name":"Robert Musyimi","orcid":"https://orcid.org/0000-0001-9810-8367","observed_orcids":["https://orcid.org/0000-0001-9810-8367"]},"institutions":[{"id":"https://openalex.org/I2841861","display_name":"Kenya Medical Research Institute","ror":"https://ror.org/04r1cxt79","country_code":"KE","type":"facility","lineage":["https://openalex.org/I2841861","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I4405267625","display_name":"KEMRI-Wellcome Trust Research Programme","ror":"https://ror.org/03my81p15","country_code":"KE","type":"facility","lineage":["https://openalex.org/I4405267625"]}],"countries":["KE"],"is_corresponding":false,"raw_author_name":"Robert Musyimi","raw_affiliation_strings":["Kenya Medical Research Institute/Wellcome Trust Research Program, Centre for Geographic Medicine Research\u2014Coast, Kilifi, Kenya"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kenya Medical Research Institute/Wellcome Trust Research Program, Centre for Geographic Medicine Research\u2014Coast, Kilifi, Kenya","institution_ids":["https://openalex.org/I2841861","https://openalex.org/I4405267625"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010446557","display_name":"Nina E. Glass","orcid":"https://orcid.org/0000-0002-6821-4289","observed_orcids":["https://orcid.org/0000-0002-6821-4289"]},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"government","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nina Glass","raw_affiliation_strings":["Respiratory Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Respiratory Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010146430","display_name":"J. Anthony G. Scott","orcid":"https://orcid.org/0000-0001-7533-5006","observed_orcids":["https://orcid.org/0000-0001-7533-5006"]},"institutions":[{"id":"https://openalex.org/I2802742124","display_name":"John Radcliffe Hospital","ror":"https://ror.org/0080acb59","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2802742124","https://openalex.org/I4210127145","https://openalex.org/I4210147381"]},{"id":"https://openalex.org/I2841861","display_name":"Kenya Medical Research Institute","ror":"https://ror.org/04r1cxt79","country_code":"KE","type":"facility","lineage":["https://openalex.org/I2841861","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4405267625","display_name":"KEMRI-Wellcome Trust Research Programme","ror":"https://ror.org/03my81p15","country_code":"KE","type":"facility","lineage":["https://openalex.org/I4405267625"]}],"countries":["GB","KE"],"is_corresponding":false,"raw_author_name":"J. Anthony G. Scott","raw_affiliation_strings":["Kenya Medical Research Institute/Wellcome Trust Research Program, Centre for Geographic Medicine Research\u2014Coast, Kilifi, Kenya","Nuffield Department of Clinical Medicine, Oxford University, John Radcliffe Hospital, Oxford, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kenya Medical Research Institute/Wellcome Trust Research Program, Centre for Geographic Medicine Research\u2014Coast, Kilifi, Kenya","institution_ids":["https://openalex.org/I2841861","https://openalex.org/I4405267625"]},{"raw_affiliation_string":"Nuffield Department of Clinical Medicine, Oxford University, John Radcliffe Hospital, Oxford, United Kingdom","institution_ids":["https://openalex.org/I2802742124","https://openalex.org/I40120149"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5086802305"],"corresponding_institution_ids":["https://openalex.org/I2841861","https://openalex.org/I4405267625"],"apc_list":null,"apc_paid":null,"fwci":0.4201,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.70346429,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"45","issue":"10","first_page":"3408","last_page":"3410"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10654","display_name":"Pneumonia and Respiratory Infections","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10654","display_name":"Pneumonia and Respiratory Infections","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12167","display_name":"Bacterial Identification and Susceptibility Testing","score":0.0013000000035390258,"subfield":{"id":"https://openalex.org/subfields/1308","display_name":"Clinical Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11688","display_name":"Microbial infections and disease research","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/streptococcus-pneumoniae","display_name":"Streptococcus pneumoniae","score":1.0},{"id":"https://openalex.org/keywords/nasopharyngeal-swab","display_name":"nasopharyngeal swab","score":0.9490000009536743},{"id":"https://openalex.org/keywords/pneumococcal-carriage","display_name":"pneumococcal carriage","score":0.9229999780654907},{"id":"https://openalex.org/keywords/children","display_name":"children","score":0.5820000171661377},{"id":"https://openalex.org/keywords/kenya","display_name":"Kenya","score":0.9279999732971191}],"concepts":[{"id":"https://openalex.org/C2781253189","wikidata":"https://www.wikidata.org/wiki/Q221179","display_name":"Streptococcus pneumoniae","level":3,"score":0.7476546168327332},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.6431806683540344},{"id":"https://openalex.org/C189539697","wikidata":"https://www.wikidata.org/wiki/Q1125312","display_name":"Microbiological culture","level":3,"score":0.48538005352020264},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4363189935684204},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.37254178524017334},{"id":"https://openalex.org/C42972112","wikidata":"https://www.wikidata.org/wiki/Q170201","display_name":"Veterinary medicine","level":1,"score":0.35347068309783936},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.30869412422180176},{"id":"https://openalex.org/C501593827","wikidata":"https://www.wikidata.org/wiki/Q12187","display_name":"Antibiotics","level":2,"score":0.07690536975860596},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003470","descriptor_name":"Culture Media","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003470","descriptor_name":"Culture Media","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003470","descriptor_name":"Culture Media","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007223","descriptor_name":"Infant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007223","descriptor_name":"Infant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007223","descriptor_name":"Infant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009305","descriptor_name":"Nasopharynx","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D009305","descriptor_name":"Nasopharynx","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D009305","descriptor_name":"Nasopharynx","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D013296","descriptor_name":"Streptococcus pneumoniae","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D013296","descriptor_name":"Streptococcus pneumoniae","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D013296","descriptor_name":"Streptococcus pneumoniae","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D013296","descriptor_name":"Streptococcus pneumoniae","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D013296","descriptor_name":"Streptococcus pneumoniae","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D013296","descriptor_name":"Streptococcus pneumoniae","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1128/jcm.01393-07","doi":"https://doi.org/10.1128/jcm.01393-07","is_oa":false,"landing_page_url":"https://doi.org/10.1128/jcm.01393-07","pdf_url":null,"source":{"id":"https://openalex.org/S53087977","display_name":"Journal of Clinical Microbiology","issn_l":"0095-1137","issn":["0095-1137","1070-633X","1098-660X"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-2","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Microbiology","raw_type":"journal-article"},{"id":"pmid:17699645","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17699645","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of clinical microbiology","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2045369","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2045369","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Clin Microbiol","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:2045369","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2045369","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Clin Microbiol","raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.9476000070571899}],"sustainable_development_goals_aurora":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.4099999964237213}],"study_designs":[],"awards":[{"id":"https://openalex.org/G255058764","display_name":"An analysis of natural immunity to invasive pneumococcal disease among infants and young children in Kilifi, Kenya.","funder_award_id":"061089","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G8766889080","display_name":"An effectiveness study of 7-valent Pneumococcal Conjugate Vaccine administered through EPI in the Kilifi Demographic Surveillance Survey Area.","funder_award_id":"081835","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":5,"referenced_works":["https://openalex.org/W1978577478","https://openalex.org/W1992162323","https://openalex.org/W2043801100","https://openalex.org/W2054748013","https://openalex.org/W4230710519"],"related_works":["https://openalex.org/W5726709","https://openalex.org/W2050457088","https://openalex.org/W2381544449","https://openalex.org/W2365380702","https://openalex.org/W2363900734","https://openalex.org/W2751029074","https://openalex.org/W2354441856","https://openalex.org/W2017369909","https://openalex.org/W2803024167","https://openalex.org/W2408591254"],"abstract_inverted_index":{"We":[0],"compared":[1],"nasopharyngeal":[2],"swabs":[3,43],"against":[4],"nasal":[5,30],"wash":[6,31],"cultures":[7,34],"for":[8,37],"detecting":[9],"colonizing":[10],"pneumococci":[11],"and":[12],"examined":[13],"the":[14,25,41],"effect":[15],"of":[16],"frozen":[17],"storage":[18],"in":[19],"skim":[20],"milk-tryptone-glucose-glycerin":[21],"on":[22,45],"culture.":[23],"Among":[24],"55":[26],"children":[27],"with":[28],"positive":[29,36,44,51],"cultures,":[32],"swab":[33],"were":[35,50],"47":[38],"(85%).":[39],"Of":[40],"96":[42],"direct":[46],"plating,":[47],"94":[48],"(98%)":[49],"when":[52],"recultured":[53],"after":[54],"freezing.":[55]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":4}],"updated_date":"2026-10-08T09:06:37.294493","created_date":"2016-06-24T00:00:00"}
