{"id":"https://openalex.org/W2090631362","doi":"https://doi.org/10.1142/s0219633608003629","title":"INTRAMOLECULAR EXCITED ENERGY TRANSFER PATHWAYS IN PROTEINS","display_name":"INTRAMOLECULAR EXCITED ENERGY TRANSFER PATHWAYS IN PROTEINS","publication_year":2008,"publication_date":"2008-01-21","ids":{"openalex":"https://openalex.org/W2090631362","doi":"https://doi.org/10.1142/s0219633608003629","mag":"2090631362"},"language":"en","primary_location":{"id":"doi:10.1142/s0219633608003629","doi":"https://doi.org/10.1142/s0219633608003629","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219633608003629","pdf_url":null,"source":{"id":"https://openalex.org/S165401249","display_name":"Journal of Theoretical and Computational Chemistry","issn_l":"0219-6336","issn":["0219-6336","1793-6888"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","jufo-1","norway-1","poland-40"],"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Theoretical and Computational Chemistry","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111481689","display_name":"Leonardo Lareo","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I233745408","display_name":"Pontificia Universidad Javeriana","ror":"https://ror.org/03etyjw28","country_code":"CO","type":"education","lineage":["https://openalex.org/I233745408"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"LEONARDO R. LAREO","raw_affiliation_strings":["Computational and Structural Biochemistry and Bioinformatics, Department of Nutrition and Biochemistry, School of Sciences, Pontificia Universidad Javeriana, Carrera 7a # 43-82, Carlos Ortiz, S. J. Bldg., Rm. 117, Bogota, DC, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational and Structural Biochemistry and Bioinformatics, Department of Nutrition and Biochemistry, School of Sciences, Pontificia Universidad Javeriana, Carrera 7a # 43-82, Carlos Ortiz, S. J. Bldg., Rm. 117, Bogota, DC, USA","institution_ids":["https://openalex.org/I233745408"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061562222","display_name":"Janneth Gonz\u00e1lez","orcid":"https://orcid.org/0000-0003-2009-3374","observed_orcids":["https://orcid.org/0000-0003-2009-3374"]},"institutions":[{"id":"https://openalex.org/I233745408","display_name":"Pontificia Universidad Javeriana","ror":"https://ror.org/03etyjw28","country_code":"CO","type":"education","lineage":["https://openalex.org/I233745408"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"JANNETH GONZ\u00c1LEZ","raw_affiliation_strings":["Computational and Structural Biochemistry and Bioinformatics, Department of Nutrition and Biochemistry, School of Sciences, Pontificia Universidad Javeriana, Carrera 7a # 43-82, Carlos Ortiz, S. J. Bldg., Rm. 117, Bogota, DC, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational and Structural Biochemistry and Bioinformatics, Department of Nutrition and Biochemistry, School of Sciences, Pontificia Universidad Javeriana, Carrera 7a # 43-82, Carlos Ortiz, S. J. Bldg., Rm. 117, Bogota, DC, USA","institution_ids":["https://openalex.org/I233745408"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I233745408"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.14805117,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":93},"biblio":{"volume":"07","issue":"01","first_page":"91","last_page":"102"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11129","display_name":"Photochemistry and Electron Transfer Studies","score":0.5692999958992004,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11129","display_name":"Photochemistry and Electron Transfer Studies","score":0.5692999958992004,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11177","display_name":"Spectroscopy and Quantum Chemical Studies","score":0.21559999883174896,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.19089999794960022,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nonradiative-energy-transfer","display_name":"nonradiative energy transfer","score":0.8730000257492065},{"id":"https://openalex.org/keywords/aromatic-amino-acids","display_name":"aromatic amino acids","score":0.8489999771118164},{"id":"https://openalex.org/keywords/pi-orbital-interaction","display_name":"\u03c0-orbital interaction","score":0.9729999899864197},{"id":"https://openalex.org/keywords/protein-structure","display_name":"protein structure","score":0.5609999895095825},{"id":"https://openalex.org/keywords/energy-perturbation","display_name":"energy perturbation","score":0.5640000104904175},{"id":"https://openalex.org/keywords/protein-signaling","display_name":"protein signaling","score":0.4390000104904175},{"id":"https://openalex.org/keywords/conductive-materials","display_name":"conductive materials","score":0.8999999761581421}],"concepts":[{"id":"https://openalex.org/C75079739","wikidata":"https://www.wikidata.org/wiki/Q1571801","display_name":"Intramolecular force","level":2,"score":0.8613609075546265},{"id":"https://openalex.org/C159467904","wikidata":"https://www.wikidata.org/wiki/Q2001702","display_name":"Chemical physics","level":1,"score":0.633088231086731},{"id":"https://openalex.org/C123669783","wikidata":"https://www.wikidata.org/wiki/Q902898","display_name":"Electron transfer","level":2,"score":0.606120765209198},{"id":"https://openalex.org/C106447425","wikidata":"https://www.wikidata.org/wiki/Q11379","display_name":"Energy transfer","level":2,"score":0.598360538482666},{"id":"https://openalex.org/C181500209","wikidata":"https://www.wikidata.org/wiki/Q215328","display_name":"Excited state","level":2,"score":0.5773545503616333},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5423136949539185},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.526605486869812},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.5121324062347412},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.4963284134864807},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.4242081642150879},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2664305567741394},{"id":"https://openalex.org/C184779094","wikidata":"https://www.wikidata.org/wiki/Q26383","display_name":"Atomic physics","level":1,"score":0.20995000004768372},{"id":"https://openalex.org/C75473681","wikidata":"https://www.wikidata.org/wiki/Q188651","display_name":"Photochemistry","level":1,"score":0.1936740279197693},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.14194220304489136},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.11421814560890198},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.08818867802619934},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.08732593059539795}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1142/s0219633608003629","doi":"https://doi.org/10.1142/s0219633608003629","is_oa":false,"landing_page_url":"https://doi.org/10.1142/s0219633608003629","pdf_url":null,"source":{"id":"https://openalex.org/S165401249","display_name":"Journal of Theoretical and Computational Chemistry","issn_l":"0219-6336","issn":["0219-6336","1793-6888"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","jufo-1","norway-1","poland-40"],"host_organization":"https://openalex.org/P4310319815","host_organization_name":"World Scientific","host_organization_lineage":["https://openalex.org/P4310319815"],"host_organization_lineage_names":["World Scientific"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Theoretical and Computational Chemistry","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W191629790","https://openalex.org/W1538688817","https://openalex.org/W1546896179","https://openalex.org/W1978860374","https://openalex.org/W1984547849","https://openalex.org/W2037871249","https://openalex.org/W2041411377","https://openalex.org/W2048631643","https://openalex.org/W2048675510","https://openalex.org/W2073699475","https://openalex.org/W2080796053","https://openalex.org/W2089722106","https://openalex.org/W2140405887","https://openalex.org/W2151769486","https://openalex.org/W4388224701"],"related_works":["https://openalex.org/W205116445","https://openalex.org/W2279415200","https://openalex.org/W2465964970","https://openalex.org/W2094376759","https://openalex.org/W2324093694","https://openalex.org/W2008869496","https://openalex.org/W2349757143","https://openalex.org/W1993514590","https://openalex.org/W2317218183","https://openalex.org/W2006405671"],"abstract_inverted_index":{"The":[0],"transfer":[1,19,31,73],"of":[2,20,29,37,55,79],"energy":[3,21,72],"perturbations":[4,22],"within":[5,23],"protein":[6],"structure":[7],"is":[8,32],"an":[9],"important":[10],"phenomenon":[11],"in":[12,26],"many":[13],"biological":[14],"processes.":[15],"In":[16,59],"particular,":[17],"the":[18,27,35,51,76,96],"a":[24,65],"molecule":[25],"absence":[28],"electron":[30],"critical":[33],"to":[34,50,67],"understanding":[36],"such":[38],"processes":[39],"as":[40,93],"signaling":[41],"involving":[42],"receptors,":[43],"channels,":[44],"and":[45,49,53,87],"enzymes":[46],"among":[47],"others,":[48],"design":[52],"development":[54],"relevant":[56],"conducting":[57],"materials.":[58],"this":[60,69],"work,":[61],"we":[62],"have":[63],"proposed":[64],"mechanism":[66],"explain":[68],"nonradiative,":[70],"nonelectron":[71],"based":[74],"on":[75],"\u03c0-orbital":[77],"interactions":[78],"aromatic":[80],"amino":[81],"acids.":[82],"Additionally,":[83],"some":[84],"theoretical":[85],"background":[86],"possible":[88],"computational":[89],"approaches":[90],"are":[91],"presented":[92],"support":[94],"for":[95],"proposal.":[97]},"counts_by_year":[{"year":2020,"cited_by_count":1}],"updated_date":"2026-09-26T08:19:03.415552","created_date":"2016-06-24T00:00:00"}