{"id":"https://openalex.org/W2086168104","doi":"https://doi.org/10.1046/j.1365-2672.1999.00664.x","title":"Characterization ofrpoSalleles inEscherichia coliO157:H7 and in otherE. coliserotypes","display_name":"Characterization ofrpoSalleles inEscherichia coliO157:H7 and in otherE. coliserotypes","publication_year":1999,"publication_date":"1999-02-01","ids":{"openalex":"https://openalex.org/W2086168104","doi":"https://doi.org/10.1046/j.1365-2672.1999.00664.x","mag":"2086168104","pmid":"https://pubmed.ncbi.nlm.nih.gov/10063629"},"language":"en","primary_location":{"id":"doi:10.1046/j.1365-2672.1999.00664.x","doi":"https://doi.org/10.1046/j.1365-2672.1999.00664.x","is_oa":false,"landing_page_url":"https://doi.org/10.1046/j.1365-2672.1999.00664.x","pdf_url":null,"source":{"id":"https://openalex.org/S39794811","display_name":"Journal of Applied Microbiology","issn_l":"1364-5072","issn":["1364-5072","1365-2672"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Applied Microbiology","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039126265","display_name":"Adriana O. Ferreira","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210092791","display_name":"New York State College of Agriculture & Life Sciences","ror":"https://ror.org/00j52pq61","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295","https://openalex.org/I4210092791"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Ferreira","raw_affiliation_strings":["Cornell University, Food Science Department, Ithaca, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cornell University, Food Science Department, Ithaca, NY, USA","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4210092791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087247024","display_name":"L. Rendano","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210092791","display_name":"New York State College of Agriculture & Life Sciences","ror":"https://ror.org/00j52pq61","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295","https://openalex.org/I4210092791"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"L. Rendano","raw_affiliation_strings":["Cornell University, Food Science Department, Ithaca, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cornell University, Food Science Department, Ithaca, NY, USA","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4210092791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082217142","display_name":"Martin Wiedmann","orcid":"https://orcid.org/0000-0002-4168-5662","observed_orcids":["https://orcid.org/0000-0002-4168-5662"]},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210092791","display_name":"New York State College of Agriculture & Life Sciences","ror":"https://ror.org/00j52pq61","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295","https://openalex.org/I4210092791"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Wiedmann","raw_affiliation_strings":["Cornell University, Food Science Department, Ithaca, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cornell University, Food Science Department, Ithaca, NY, USA","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4210092791"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033699998","display_name":"Kathryn J. Boor","orcid":"https://orcid.org/0000-0001-6810-3434","observed_orcids":["https://orcid.org/0000-0001-6810-3434"]},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210092791","display_name":"New York State College of Agriculture & Life Sciences","ror":"https://ror.org/00j52pq61","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295","https://openalex.org/I4210092791"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"K. J. Boor","raw_affiliation_strings":["Cornell University, Food Science Department, Ithaca, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cornell University, Food Science Department, Ithaca, NY, USA","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4210092791"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2864,"currency":"GBP","value_usd":3777},"apc_paid":null,"fwci":1.0954,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.74472978,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"86","issue":"2","first_page":"295","last_page":"301"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10943","display_name":"Escherichia coli research studies","score":0.8564000129699707,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10943","display_name":"Escherichia coli research studies","score":0.8564000129699707,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.1429000049829483,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13849","display_name":"Enterobacteriaceae and Cronobacter Research","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rpos","display_name":"RpoS","score":0.9330000281333923},{"id":"https://openalex.org/keywords/escherichia-coli-o157-h7","display_name":"Escherichia coli O157:H7","score":0.9779999852180481},{"id":"https://openalex.org/keywords/acid-tolerance","display_name":"acid resistance","score":0.8069999814033508},{"id":"https://openalex.org/keywords/serotype-differentiation","display_name":"serotype differentiation","score":0.5609999895095825},{"id":"https://openalex.org/keywords/gram-negative-bacteria","display_name":"Gram-negative bacteria","score":0.7310000061988831}],"concepts":[{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.9127866625785828},{"id":"https://openalex.org/C2777712861","wikidata":"https://www.wikidata.org/wiki/Q7375543","display_name":"rpoS","level":5,"score":0.8748924732208252},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7951574325561523},{"id":"https://openalex.org/C2778910516","wikidata":"https://www.wikidata.org/wiki/Q380136","display_name":"Enterobacteriaceae","level":4,"score":0.7104833722114563},{"id":"https://openalex.org/C10389963","wikidata":"https://www.wikidata.org/wiki/Q848328","display_name":"Serotype","level":2,"score":0.6228256821632385},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.6220910549163818},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.6058850884437561},{"id":"https://openalex.org/C84148353","wikidata":"https://www.wikidata.org/wiki/Q863908","display_name":"Nucleic acid sequence","level":3,"score":0.4852047264575958},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.4601377546787262},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.4449314475059509},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4253523051738739},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21343916654586792},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.057523638010025024},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004783","descriptor_name":"Environmental Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D004927","descriptor_name":"Escherichia coli Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006863","descriptor_name":"Hydrogen-Ion Concentration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008461","descriptor_name":"Meat Products","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012703","descriptor_name":"Serotyping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012808","descriptor_name":"Sigma Factor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019453","descriptor_name":"Escherichia coli O157","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D019453","descriptor_name":"Escherichia coli O157","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019453","descriptor_name":"Escherichia coli O157","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1046/j.1365-2672.1999.00664.x","doi":"https://doi.org/10.1046/j.1365-2672.1999.00664.x","is_oa":false,"landing_page_url":"https://doi.org/10.1046/j.1365-2672.1999.00664.x","pdf_url":null,"source":{"id":"https://openalex.org/S39794811","display_name":"Journal of Applied Microbiology","issn_l":"1364-5072","issn":["1364-5072","1365-2672"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Applied Microbiology","raw_type":"journal-article"},{"id":"pmid:10063629","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/10063629","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of applied microbiology","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.428600013256073,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W588812189","https://openalex.org/W643035040","https://openalex.org/W1556215826","https://openalex.org/W1560298788","https://openalex.org/W1607671641","https://openalex.org/W1723696742","https://openalex.org/W1848602779","https://openalex.org/W1902575090","https://openalex.org/W1916929424","https://openalex.org/W1919248975","https://openalex.org/W1938344531","https://openalex.org/W1971042288","https://openalex.org/W1989599765","https://openalex.org/W1992983854","https://openalex.org/W2011036361","https://openalex.org/W2035115557","https://openalex.org/W2035849178","https://openalex.org/W2036935628","https://openalex.org/W2066580801","https://openalex.org/W2074302978","https://openalex.org/W2087175715","https://openalex.org/W2106555580","https://openalex.org/W2113426497","https://openalex.org/W2114448039","https://openalex.org/W2115024759","https://openalex.org/W2116339680","https://openalex.org/W2119456166","https://openalex.org/W2124786260","https://openalex.org/W2158398453","https://openalex.org/W2171858573"],"related_works":["https://openalex.org/W2095802537","https://openalex.org/W2141689686","https://openalex.org/W2119456166","https://openalex.org/W2061706147","https://openalex.org/W2070584565","https://openalex.org/W1966412723","https://openalex.org/W2143093385","https://openalex.org/W7120854161","https://openalex.org/W7126935101","https://openalex.org/W2138725893"],"abstract_inverted_index":{"The":[0,106],"rpoS":[1,113],"nucleotide":[2,153],"and":[3,34,49,53],"predicted":[4],"amino":[5,42,55],"acid":[6,43,56],"sequences":[7,84],"from":[8,18,89,98,161],"three":[9,19,52],"Escherichia":[10],"coli":[11,22,30,81,118,146,164],"O157:H7":[12,27,147],"isolates":[13,36,148],"were":[14,85,123],"compared":[15,86],"with":[16,61,87,127],"those":[17,88],"other":[20,76,162],"E.":[21,29,80,117,145,163],"isolates,":[23],"including":[24],"the":[25,62,67,79,103,110],"likely":[26],"progenitor,":[28],"O55:H7.":[31],"These":[32],"clinical":[33],"environmental":[35],"all":[37,121,144],"had":[38,51,150],"identical":[39],"sigma":[40,70,82,93],"S":[41,71,83,94],"sequences,":[44],"while":[45],"laboratory":[46],"strains":[47,122,160],"K12":[48],"DH1":[50],"one":[54],"alterations,":[57],"respectively,":[58],"in":[59],"comparison":[60],"majority":[63],"sequence.":[64],"To":[65],"extend":[66],"analysis":[68],"of":[69,112],"sequence":[72,95],"conservation":[73],"to":[74,100,136],"include":[75],"Gram-negative":[77,91],"bacteria,":[78],"diverse":[90],"organisms;":[92],"identities":[96],"ranged":[97],"50.2":[99],"99.7%":[101],"among":[102,115],"available":[104],"sequences.":[105],"results":[107],"further":[108],"confirm":[109],"existence":[111],"alleles":[114],"different":[116],"strains,":[119],"although":[120],"classified":[124],"as":[125],"acid-resistant":[126],"survival":[128],"rates":[129],">":[130],"10%":[131],"after":[132],"2":[133],"h":[134],"exposure":[135],"pH":[137],"2.5.":[138],"It":[139],"was":[140],"also":[141],"found":[142],"that":[143],"tested":[149],"a":[151],"unique":[152],"at":[154],"position":[155],"543,":[156],"thus":[157],"differentiating":[158],"these":[159],"serotypes.":[165]},"counts_by_year":[{"year":2016,"cited_by_count":1}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}
