{"id":"https://openalex.org/W2085463536","doi":"https://doi.org/10.1371/journal.pone.0111245","title":"Stochastic Tracking of Infection in a CF Lung","display_name":"Stochastic Tracking of Infection in a CF Lung","publication_year":2014,"publication_date":"2014-10-31","ids":{"openalex":"https://openalex.org/W2085463536","doi":"https://doi.org/10.1371/journal.pone.0111245","mag":"2085463536","pmid":"https://pubmed.ncbi.nlm.nih.gov/25360611","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/4216002"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pone.0111245","doi":"https://doi.org/10.1371/journal.pone.0111245","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0111245","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0111245&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS ONE","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0111245&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101464589","display_name":"Sara Zarei","orcid":"https://orcid.org/0009-0004-2037-6299","observed_orcids":["https://orcid.org/0009-0004-2037-6299","https://orcid.org/0000-0001-6217-9147"]},"institutions":[{"id":"https://openalex.org/I26538001","display_name":"San Diego State University","ror":"https://ror.org/0264fdx42","country_code":"US","type":"education","lineage":["https://openalex.org/I26538001"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sara Zarei","raw_affiliation_strings":["Computational Science Research Center, San Diego State University, San Diego, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Science Research Center, San Diego State University, San Diego, California, United States of America","institution_ids":["https://openalex.org/I26538001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028190651","display_name":"Ali Mirtar","orcid":"https://orcid.org/0000-0002-4298-5894","observed_orcids":["https://orcid.org/0000-0002-4298-5894"]},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ali Mirtar","raw_affiliation_strings":["Electrical and Computer Eng. Dep/University of California San Diego, San Diego, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical and Computer Eng. Dep/University of California San Diego, San Diego, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026525836","display_name":"Forest L. Rohwer","orcid":"https://orcid.org/0000-0003-1548-5429","observed_orcids":["https://orcid.org/0000-0003-1548-5429"]},"institutions":[{"id":"https://openalex.org/I26538001","display_name":"San Diego State University","ror":"https://ror.org/0264fdx42","country_code":"US","type":"education","lineage":["https://openalex.org/I26538001"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Forest Rohwer","raw_affiliation_strings":["Department of Biology, San Diego State University, San Diego, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, San Diego State University, San Diego, California, United States of America","institution_ids":["https://openalex.org/I26538001"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084207421","display_name":"Peter Salamon","orcid":"https://orcid.org/0000-0002-6274-406X","observed_orcids":["https://orcid.org/0000-0002-6274-406X"]},"institutions":[{"id":"https://openalex.org/I26538001","display_name":"San Diego State University","ror":"https://ror.org/0264fdx42","country_code":"US","type":"education","lineage":["https://openalex.org/I26538001"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter Salamon","raw_affiliation_strings":["Department of Mathematics and Statistics, San Diego State University, San Diego, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, San Diego State University, San Diego, California, United States of America","institution_ids":["https://openalex.org/I26538001"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5101464589"],"corresponding_institution_ids":["https://openalex.org/I26538001"],"apc_list":{"value":2382,"currency":"USD","value_usd":2382},"apc_paid":{"value":2382,"currency":"USD","value_usd":2382},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.18245163,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"9","issue":"10","first_page":"e111245","last_page":"e111245"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10665","display_name":"Cystic Fibrosis Research Advances","score":0.8920999765396118,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10665","display_name":"Cystic Fibrosis Research Advances","score":0.8920999765396118,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10522","display_name":"Medical Imaging Techniques and Applications","score":0.026000000536441803,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.019200000911951065,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cystic-fibrosis","display_name":"cystic fibrosis","score":0.9869999885559082},{"id":"https://openalex.org/keywords/metropolis-hastings-algorithm","display_name":"Metropolis-Hastings algorithm","score":0.8799999952316284},{"id":"https://openalex.org/keywords/image-enhancement","display_name":"image enhancement","score":0.6200000047683716},{"id":"https://openalex.org/keywords/interpolation","display_name":"interpolation","score":0.46700000762939453},{"id":"https://openalex.org/keywords/spirometry","display_name":"spirometry","score":0.6800000071525574},{"id":"https://openalex.org/keywords/chronic-obstructive-pulmonary-disease","display_name":"chronic obstructive pulmonary disease","score":0.9179999828338623}],"concepts":[{"id":"https://openalex.org/C143409427","wikidata":"https://www.wikidata.org/wiki/Q161238","display_name":"Magnetic resonance imaging","level":2,"score":0.5781558156013489},{"id":"https://openalex.org/C2776938444","wikidata":"https://www.wikidata.org/wiki/Q178194","display_name":"Cystic fibrosis","level":2,"score":0.55433189868927},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5076993703842163},{"id":"https://openalex.org/C2777714996","wikidata":"https://www.wikidata.org/wiki/Q7886","display_name":"Lung","level":2,"score":0.5063461065292358},{"id":"https://openalex.org/C2779379686","wikidata":"https://www.wikidata.org/wiki/Q32778","display_name":"Bronchiectasis","level":3,"score":0.48464614152908325},{"id":"https://openalex.org/C2776780178","wikidata":"https://www.wikidata.org/wiki/Q199804","display_name":"COPD","level":2,"score":0.45736393332481384},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3991580009460449},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3753240704536438},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.35181087255477905},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3277115821838379},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.12886857986450195}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003550","descriptor_name":"Cystic Fibrosis","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D003550","descriptor_name":"Cystic Fibrosis","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D003550","descriptor_name":"Cystic Fibrosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008168","descriptor_name":"Lung","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014057","descriptor_name":"Tomography, X-Ray Computed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055745","descriptor_name":"Bronchioles","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pone.0111245","doi":"https://doi.org/10.1371/journal.pone.0111245","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0111245","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0111245&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS ONE","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:3189720","doi":null,"is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC4216002","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:4216002","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4216002","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS One","raw_type":"Text"},{"id":"pmid:25360611","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25360611","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PloS one","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.784.4783","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.784.4783","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/8e/af/pone.0111245.PMC4216002.pdf","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:165fb7b368c646efad6ca94a66938b58","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/165fb7b368c646efad6ca94a66938b58","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS ONE, Vol 9, Iss 10, p e111245 (2014)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pone.0111245","doi":"https://doi.org/10.1371/journal.pone.0111245","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0111245","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0111245&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS ONE","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.9789000153541565}],"study_designs":[],"awards":[{"id":"https://openalex.org/G3543518614","display_name":null,"funder_award_id":"56586B","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7819699700","display_name":null,"funder_award_id":"56586B","funder_id":"https://openalex.org/F4320332505","funder_display_name":"U.S. Public Health Service"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332505","display_name":"U.S. Public Health Service","ror":"https://ror.org/05xf94514"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2085463536.pdf","grobid_xml":"https://content.openalex.org/works/W2085463536.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W43753625","https://openalex.org/W189129979","https://openalex.org/W191192140","https://openalex.org/W571706939","https://openalex.org/W2003149418","https://openalex.org/W2035436323","https://openalex.org/W2047758322","https://openalex.org/W2048319348","https://openalex.org/W2057841587","https://openalex.org/W2072676969","https://openalex.org/W2075135226","https://openalex.org/W2076624713","https://openalex.org/W2109454767","https://openalex.org/W2113681054","https://openalex.org/W2116180558","https://openalex.org/W2132506987","https://openalex.org/W2143945555","https://openalex.org/W2146918217","https://openalex.org/W2153766545","https://openalex.org/W2164295095","https://openalex.org/W2166430528","https://openalex.org/W2255499108"],"related_works":["https://openalex.org/W1979706462","https://openalex.org/W2016362442","https://openalex.org/W1986684558","https://openalex.org/W3083931463","https://openalex.org/W2596500221","https://openalex.org/W1986009326","https://openalex.org/W2616400094","https://openalex.org/W2528642677","https://openalex.org/W2087691971","https://openalex.org/W2417433289"],"abstract_inverted_index":{"Magnetic":[0],"Resonance":[1],"Imaging":[2],"(MRI)":[3],"and":[4,53],"Computed":[5],"Tomography":[6],"(CT)":[7],"scan":[8,52],"are":[9],"the":[10,34,38,83,92,97,109,120,123,133,161,165],"two":[11],"ubiquitous":[12],"imaging":[13,44,111],"sources":[14],"that":[15,107],"physicians":[16],"use":[17],"to":[18,63,171],"diagnose":[19],"patients":[20,184],"with":[21,140,150,157,185],"Cystic":[22],"Fibrosis":[23],"(CF)":[24],"or":[25,187],"any":[26],"other":[27],"Chronic":[28],"Obstructive":[29],"Pulmonary":[30],"Disease":[31],"(COPD).":[32],"Unfortunately":[33],"cost":[35],"constraints":[36],"limit":[37],"frequent":[39],"usage":[40],"of":[41,58,85,96,122,132,135,163],"these":[42],"medical":[43],"procedures.":[45],"In":[46,100],"addition,":[47],"even":[48],"though":[49],"both":[50],"CT":[51,76],"MRI":[54,74],"provide":[55,78],"mesoscopic":[56],"details":[57],"a":[59,67,88,130,151],"lung,":[60],"in":[61,87,148,178,183],"order":[62],"obtain":[64],"microscopic":[65],"information":[66,81,118,142],"very":[68],"high":[69],"resolution":[70],"is":[71,127],"required.":[72],"Neither":[73],"nor":[75],"scans":[77],"micro":[79,116],"level":[80,117],"about":[82],"location":[84,121],"infection":[86],"binary":[89,93],"tree":[90,94],"structure":[91,95],"human":[98],"lung.":[99],"this":[101],"paper":[102],"we":[103],"present":[104],"an":[105,144],"algorithm":[106,147,166],"enhances":[108],"current":[110],"results":[112],"by":[113],"providing":[114],"estimated":[115],"concerning":[119],"infection.":[124],"The":[125],"estimate":[126,172],"based":[128],"on":[129],"calculation":[131],"distribution":[134],"possible":[136],"mucus":[137],"blockages":[138],"consistent":[139],"available":[141],"using":[143],"offline":[145],"Metropolis-Hastings":[146],"combination":[149],"real-time":[152],"interpolation":[153],"scheme.":[154],"When":[155],"supplemented":[156],"growth":[158],"rates":[159],"for":[160],"pockets":[162],"mucus,":[164],"can":[167],"also":[168],"be":[169],"used":[170],"how":[173],"lung":[174],"functionality":[175],"as":[176],"manifested":[177],"spirometric":[179],"tests":[180],"will":[181],"change":[182],"CF":[186],"COPD.":[188]},"counts_by_year":[],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2016-06-24T00:00:00"}
