{"id":"https://openalex.org/W2084285144","doi":"https://doi.org/10.1093/nar/13.24.8927","title":"Base pairing involving deoxyinosine: implications for probe design","display_name":"Base pairing involving deoxyinosine: implications for probe design","publication_year":1985,"publication_date":"1985-01-01","ids":{"openalex":"https://openalex.org/W2084285144","doi":"https://doi.org/10.1093/nar/13.24.8927","mag":"2084285144","pmid":"https://pubmed.ncbi.nlm.nih.gov/4080553","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/318962"},"language":"en","primary_location":{"id":"doi:10.1093/nar/13.24.8927","doi":"https://doi.org/10.1093/nar/13.24.8927","is_oa":false,"landing_page_url":"https://doi.org/10.1093/nar/13.24.8927","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/318962","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113534369","display_name":"Francis H. Martin","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1320553840","display_name":"Amgen (United States)","ror":"https://ror.org/03g03ge92","country_code":"US","type":"company","lineage":["https://openalex.org/I1320553840"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Francis H. Martin","raw_affiliation_strings":["Amgen 1900 Oak Terrace Lane, Thousand Oaks, CA 91320, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Amgen 1900 Oak Terrace Lane, Thousand Oaks, CA 91320, USA","institution_ids":["https://openalex.org/I1320553840"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106546914","display_name":"Miguel M. Castro","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1320553840","display_name":"Amgen (United States)","ror":"https://ror.org/03g03ge92","country_code":"US","type":"company","lineage":["https://openalex.org/I1320553840"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Miguel M. Castro","raw_affiliation_strings":["Amgen 1900 Oak Terrace Lane, Thousand Oaks, CA 91320, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Amgen 1900 Oak Terrace Lane, Thousand Oaks, CA 91320, USA","institution_ids":["https://openalex.org/I1320553840"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072597347","display_name":"Fareed Aboul\u2010ela","orcid":"https://orcid.org/0000-0002-0027-260X","observed_orcids":["https://orcid.org/0000-0002-0027-260X"]},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fareed Aboul-ela","raw_affiliation_strings":["Department of Chemistry and Laboratory of Chemical Biodynamics, University of California Berkeley, CA 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Laboratory of Chemical Biodynamics, University of California Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111538822","display_name":"Ignacio Tinoco","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ignacio Tinoco","raw_affiliation_strings":["Department of Chemistry and Laboratory of Chemical Biodynamics, University of California Berkeley, CA 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Laboratory of Chemical Biodynamics, University of California Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I95457486"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3992,"currency":"USD","value_usd":3992},"apc_paid":null,"fwci":3.9773,"has_fulltext":false,"cited_by_count":338,"citation_normalized_percentile":{"value":0.94842767,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":99},"biblio":{"volume":"13","issue":"24","first_page":"8927","last_page":"8938"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/deoxyinosine","display_name":"deoxyinosine","score":0.9990000128746033},{"id":"https://openalex.org/keywords/base-pairing","display_name":"base pairing","score":0.828000009059906},{"id":"https://openalex.org/keywords/thermal-stability","display_name":"thermal stability","score":0.7580000162124634},{"id":"https://openalex.org/keywords/probe-design","display_name":"probe design","score":0.8330000042915344}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9189865589141846},{"id":"https://openalex.org/C14103023","wikidata":"https://www.wikidata.org/wiki/Q11681459","display_name":"Pairing","level":3,"score":0.7110733985900879},{"id":"https://openalex.org/C42058472","wikidata":"https://www.wikidata.org/wiki/Q810214","display_name":"Base (topology)","level":2,"score":0.45760488510131836},{"id":"https://openalex.org/C185581394","wikidata":"https://www.wikidata.org/wiki/Q145911","display_name":"Base pair","level":3,"score":0.45024868845939636},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38939231634140015},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.36118364334106445},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.23757058382034302},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11704796552658081},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.08159852027893066},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C54101563","wikidata":"https://www.wikidata.org/wiki/Q124131","display_name":"Superconductivity","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007288","descriptor_name":"Inosine","qualifier_ui":"Q000031","qualifier_name":"analogs & derivatives","is_major_topic":true},{"descriptor_ui":"D009838","descriptor_name":"Oligodeoxyribonucleotides","qualifier_ui":"Q000138","qualifier_name":"chemical synthesis","is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/13.24.8927","doi":"https://doi.org/10.1093/nar/13.24.8927","is_oa":false,"landing_page_url":"https://doi.org/10.1093/nar/13.24.8927","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:318962","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/318962","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmid:4080553","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/4080553","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.606.4561","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.606.4561","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.biosyn.com/Images/ArticleImages/Base pairing involving deoxyinosine.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.833.8646","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.833.8646","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/13/24/8927.full.pdf","raw_type":"text"},{"id":"pmh:oai:open-archive.highwire.org:nar:13/24/8927","doi":null,"is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/13/24/8927","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"mag:2183772548","doi":null,"is_oa":false,"landing_page_url":"https://www.biosyn.com/Images/ArticleImages/Base%20pairing%20involving%20deoxyinosine.pdf","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:318962","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/318962","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G3676917958","display_name":null,"funder_award_id":"GM10840","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1491106180","https://openalex.org/W1545471300","https://openalex.org/W1591128854","https://openalex.org/W1966845579","https://openalex.org/W1986686615","https://openalex.org/W2000762194","https://openalex.org/W2004862139","https://openalex.org/W2010879854","https://openalex.org/W2021116729","https://openalex.org/W2027059027","https://openalex.org/W2027507785","https://openalex.org/W2027516745","https://openalex.org/W2032413102","https://openalex.org/W2042932259","https://openalex.org/W2052264592","https://openalex.org/W2053009004","https://openalex.org/W2064580019","https://openalex.org/W2064761585","https://openalex.org/W2074677328","https://openalex.org/W2087816060","https://openalex.org/W2098614613","https://openalex.org/W4250052852"],"related_works":["https://openalex.org/W7097092435","https://openalex.org/W1968582472","https://openalex.org/W7098638455","https://openalex.org/W16264087","https://openalex.org/W7099601192","https://openalex.org/W2132855104","https://openalex.org/W1985432605","https://openalex.org/W2006880736","https://openalex.org/W3086893155","https://openalex.org/W1988923901"],"abstract_inverted_index":{"The":[0,25],"thermal":[1],"stability":[2,98],"of":[3,13,38,41,46,61,119,124,142,168,173],"oligodeoxyribonucleotide":[4],"duplexes":[5,26],"containing":[6,27],"deoxyinosine":[7,152],"(I)":[8],"residues":[9],"matched":[10],"with":[11,44,148],"each":[12,151],"the":[14,69,107,122,163],"four":[15],"normal":[16],"DNA":[17,174],"bases":[18],"were":[19,32,53,82,99],"determined":[20],"by":[21,34],"optical":[22,62],"melting":[23,63],"techniques.":[24],"at":[28],"least":[29],"one":[30,45],"I":[31],"obtained":[33],"mixing":[35],"equimolar":[36],"amounts":[37],"an":[39,75],"oligonucleotide":[40,175],"sequence":[42,47,120,165],"dCA3XA3G":[43],"dCT3YT3G":[48],"where":[49],"X":[50],"and":[51],"Y":[52],"A,":[54],"C,":[55],"G,":[56],"T,":[57],"or":[58],"I.":[59],"Comparison":[60],"curves":[64],"yielded":[65],"relative":[66],"stabilities":[67,125],"for":[68,171],"I-containing":[70],"standard":[71],"base":[72,153],"pairs":[73,81,90,145],"in":[74,91,162],"otherwise":[76,150],"identical":[77],"base-pair":[78],"sequence.":[79],"I:C":[80,127],"found":[83],"to":[84,135],"be":[85],"less":[86,146,156],"stable":[87,112,157],"than":[88,113,129,132,158],"A:T":[89],"these":[92,169],"duplexes.":[93],"Large":[94],"neighboring-base":[95],"effects":[96,121],"upon":[97],"observed.":[100],"For":[101],"example,":[102],"when":[103,114],"(X,Y)":[104,115],"=":[105,116],"(I,A),":[106],"duplex":[108],"is":[109,155],"eight-fold":[110],"more":[111],"(A,I).":[117],"Independent":[118],"order":[123,138],"is:":[126],"greater":[128,131],"I:A":[130],"I:T":[133],"congruent":[134],"I:G.":[136],"This":[137],"differs":[139],"from":[140],"that":[141],"deoxyguanosine":[143,160],"which":[144],"strongly":[147],"dA;":[149],"pair":[154],"its":[159],"counterpart":[161],"same":[164],"environment.":[166],"Implications":[167],"results":[170],"design":[172],"probes":[176],"are":[177],"discussed.":[178]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":12},{"year":2012,"cited_by_count":3}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}
