{"id":"https://openalex.org/W2081875665","doi":"https://doi.org/10.1186/1475-2875-13-102","title":"Estimation of malaria haplotype and genotype frequencies: a statistical approach to overcome the challenge associated with multiclonal infections","display_name":"Estimation of malaria haplotype and genotype frequencies: a statistical approach to overcome the challenge associated with multiclonal infections","publication_year":2014,"publication_date":"2014-03-17","ids":{"openalex":"https://openalex.org/W2081875665","doi":"https://doi.org/10.1186/1475-2875-13-102","mag":"2081875665","pmid":"https://pubmed.ncbi.nlm.nih.gov/24636676","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/4004158"},"language":"en","primary_location":{"id":"doi:10.1186/1475-2875-13-102","doi":"https://doi.org/10.1186/1475-2875-13-102","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1475-2875-13-102","pdf_url":"https://malariajournal.biomedcentral.com/counter/pdf/10.1186/1475-2875-13-102","source":{"id":"https://openalex.org/S93003929","display_name":"Malaria Journal","issn_l":"1475-2875","issn":["1475-2875"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Malaria Journal","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://malariajournal.biomedcentral.com/counter/pdf/10.1186/1475-2875-13-102","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014416332","display_name":"Aimee R. Taylor","orcid":"https://orcid.org/0000-0002-2337-8992","observed_orcids":["https://orcid.org/0000-0002-2337-8992"]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Aimee R Taylor","raw_affiliation_strings":["WorldWide Antimalarial Resistance Network (WWARN), Oxford, UK. aimee.taylor@wwarn.org","WorldWide Antimalarial Resistance Network (WWARN), Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"WorldWide Antimalarial Resistance Network (WWARN), Oxford, UK. aimee.taylor@wwarn.org","institution_ids":[]},{"raw_affiliation_string":"WorldWide Antimalarial Resistance Network (WWARN), Oxford, UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062407259","display_name":"Jennifer A. Flegg","orcid":"https://orcid.org/0000-0002-8809-726X","observed_orcids":["https://orcid.org/0000-0002-8809-726X"]},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jennifer A Flegg","raw_affiliation_strings":["Centre for Tropical Medicine, Nuffield Department of Clinical Medicine, University of Oxford, Oxford, UK","WorldWide Antimalarial Resistance Network (WWARN), Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Tropical Medicine, Nuffield Department of Clinical Medicine, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"WorldWide Antimalarial Resistance Network (WWARN), Oxford, UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051310567","display_name":"Samuel L. Nsobya","orcid":"https://orcid.org/0000-0003-4986-8823","observed_orcids":["https://orcid.org/0000-0003-4986-8823"]},"institutions":[{"id":"https://openalex.org/I72227227","display_name":"Makerere University","ror":"https://ror.org/03dmz0111","country_code":"UG","type":"education","lineage":["https://openalex.org/I72227227"]}],"countries":["UG"],"is_corresponding":false,"raw_author_name":"Samuel L Nsobya","raw_affiliation_strings":["Department of Medicine, Makerere University, Kampala, Uganda"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, Makerere University, Kampala, Uganda","institution_ids":["https://openalex.org/I72227227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031756748","display_name":"Adoke Yeka","orcid":"https://orcid.org/0000-0002-2899-1470","observed_orcids":["https://orcid.org/0000-0002-2899-1470"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Adoke Yeka","raw_affiliation_strings":["Uganda Malaria Surveillance Project, Kampala, Uganda"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Uganda Malaria Surveillance Project, Kampala, Uganda","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083823135","display_name":"Moses Robert Kamya","orcid":"https://orcid.org/0000-0001-9106-4234","observed_orcids":["https://orcid.org/0000-0001-9106-4234"]},"institutions":[{"id":"https://openalex.org/I72227227","display_name":"Makerere University","ror":"https://ror.org/03dmz0111","country_code":"UG","type":"education","lineage":["https://openalex.org/I72227227"]}],"countries":["UG"],"is_corresponding":false,"raw_author_name":"Moses R Kamya","raw_affiliation_strings":["Department of Medicine, Makerere University, Kampala, Uganda"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, Makerere University, Kampala, Uganda","institution_ids":["https://openalex.org/I72227227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077631479","display_name":"Philip Jon Rosenthal","orcid":"https://orcid.org/0000-0002-7953-7622","observed_orcids":["https://orcid.org/0000-0002-7953-7622","https://orcid.org/0000-0001-7840-5401"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Philip J Rosenthal","raw_affiliation_strings":["Department of Medicine, University of California, San Francisco, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, University of California, San Francisco, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033897984","display_name":"Grant Dorsey","orcid":"https://orcid.org/0000-0003-0740-0317","observed_orcids":["https://orcid.org/0000-0003-0740-0317"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Grant Dorsey","raw_affiliation_strings":["Department of Medicine, University of California, San Francisco, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, University of California, San Francisco, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051904927","display_name":"Carol Hopkins Sibley","orcid":"https://orcid.org/0000-0001-5828-4729","observed_orcids":["https://orcid.org/0000-0001-5828-4729"]},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carol H Sibley","raw_affiliation_strings":["Department of Genome Sciences, University of Washington, Seattle, WA, USA","WorldWide Antimalarial Resistance Network (WWARN), Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genome Sciences, University of Washington, Seattle, WA, USA","institution_ids":["https://openalex.org/I201448701"]},{"raw_affiliation_string":"WorldWide Antimalarial Resistance Network (WWARN), Oxford, UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002458341","display_name":"Philippe Jean Guerin","orcid":"https://orcid.org/0000-0002-6008-2963","observed_orcids":["https://orcid.org/0000-0002-6008-2963"]},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Philippe J Guerin","raw_affiliation_strings":["Centre for Tropical Medicine, Nuffield Department of Clinical Medicine, University of Oxford, Oxford, UK","WorldWide Antimalarial Resistance Network (WWARN), Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Tropical Medicine, Nuffield Department of Clinical Medicine, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"WorldWide Antimalarial Resistance Network (WWARN), Oxford, UK","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100649922","display_name":"Chris C. Holmes","orcid":"https://orcid.org/0000-0002-6667-4943","observed_orcids":["https://orcid.org/0000-0002-6667-4943"]},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Chris C Holmes","raw_affiliation_strings":["Department of Statistics, University of Oxford, Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5014416332"],"corresponding_institution_ids":[],"apc_list":{"value":2890,"currency":"USD","value_usd":2890},"apc_paid":{"value":2890,"currency":"USD","value_usd":2890},"fwci":3.6023,"has_fulltext":true,"cited_by_count":30,"citation_normalized_percentile":{"value":0.92648212,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"13","issue":"1","first_page":"102","last_page":"102"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10091","display_name":"Malaria Research and Control","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10091","display_name":"Malaria Research and Control","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/antimalarial-drug-resistance","display_name":"antimalarial drug resistance","score":0.8180000185966492},{"id":"https://openalex.org/keywords/plasmodium-falciparum","display_name":"Plasmodium falciparum","score":0.9919999837875366},{"id":"https://openalex.org/keywords/haplotype-frequency-estimation","display_name":"haplotype frequency estimation","score":0.8629999756813049},{"id":"https://openalex.org/keywords/multiclonal-infections","display_name":"multiclonal infections","score":0.824999988079071},{"id":"https://openalex.org/keywords/multiplicity-of-infection","display_name":"multiplicity of infection","score":0.9129999876022339},{"id":"https://openalex.org/keywords/bayesian-model","display_name":"Bayesian model","score":0.7639999985694885},{"id":"https://openalex.org/keywords/sulfadoxine-pyrimethamine-resistance","display_name":"sulfadoxine-pyrimethamine resistance","score":0.9480000138282776},{"id":"https://openalex.org/keywords/missing-data-imputation","display_name":"missing data imputation","score":0.7369999885559082},{"id":"https://openalex.org/keywords/artemisinin-resistance","display_name":"artemisinin resistance","score":0.7149999737739563}],"concepts":[{"id":"https://openalex.org/C2778048844","wikidata":"https://www.wikidata.org/wiki/Q12156","display_name":"Malaria","level":2,"score":0.7626295685768127},{"id":"https://openalex.org/C2778371730","wikidata":"https://www.wikidata.org/wiki/Q311383","display_name":"Plasmodium falciparum","level":3,"score":0.7006642818450928},{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.6734861731529236},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.6025059223175049},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5630685091018677},{"id":"https://openalex.org/C37463918","wikidata":"https://www.wikidata.org/wiki/Q387981","display_name":"Allele frequency","level":4,"score":0.5573776364326477},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5422978401184082},{"id":"https://openalex.org/C175239580","wikidata":"https://www.wikidata.org/wiki/Q656595","display_name":"Genotype frequency","level":5,"score":0.4318546652793884},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3807000517845154},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.34080392122268677},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2539374530315399},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.11342501640319824},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09669128060340881}],"mesh":[{"descriptor_ui":"D004351","descriptor_name":"Drug Resistance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010963","descriptor_name":"Plasmodium falciparum","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010963","descriptor_name":"Plasmodium falciparum","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D010963","descriptor_name":"Plasmodium falciparum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010963","descriptor_name":"Plasmodium falciparum","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D014454","descriptor_name":"Uganda","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015995","descriptor_name":"Prevalence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016778","descriptor_name":"Malaria, Falciparum","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D016778","descriptor_name":"Malaria, Falciparum","qualifier_ui":"Q000469","qualifier_name":"parasitology","is_major_topic":true}],"locations_count":9,"locations":[{"id":"doi:10.1186/1475-2875-13-102","doi":"https://doi.org/10.1186/1475-2875-13-102","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1475-2875-13-102","pdf_url":"https://malariajournal.biomedcentral.com/counter/pdf/10.1186/1475-2875-13-102","source":{"id":"https://openalex.org/S93003929","display_name":"Malaria Journal","issn_l":"1475-2875","issn":["1475-2875"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Malaria Journal","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2979916","doi":null,"is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC4004158","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:4004158","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4004158","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Malar J","raw_type":"Text"},{"id":"pmid:24636676","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24636676","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Malaria journal","raw_type":"Evaluation Study"},{"id":"pmh:oai:jupiter.its.unimelb.edu.au:11343/261601","doi":null,"is_oa":true,"landing_page_url":"https://hdl.handle.net/11343/261601","pdf_url":"http://hdl.handle.net/11343/261601","source":{"id":"https://openalex.org/S4377196259","display_name":"Minerva Access (University of Melbourne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I165779595","host_organization_name":"The University of Melbourne","host_organization_lineage":["https://openalex.org/I165779595"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt06r2r86z","doi":null,"is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/06r2r86z","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:qt06r2r86z","doi":null,"is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/06r2r86z","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Rosenthal, Philip; Taylor, AR; Flegg, JA; Nsobya, SL; Yeka, A; Kamya, MR; \u00c2\u00a0et al.(2014). Estimation of malaria haplotype and genotype frequencies: A statistical approach to overcome the challenge associated with multiclonal infections. UC San Francisco: Retrieved from: http://www.escholarship.org/uc/item/06r2r86z","raw_type":"article"},{"id":"doi:10.60692/gaxp5-fxs21","doi":"https://doi.org/10.60692/gaxp5-fxs21","is_oa":true,"landing_page_url":"https://doi.org/10.60692/gaxp5-fxs21","pdf_url":null,"source":{"id":"https://openalex.org/S7407051682","display_name":"Greater South Information System","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.60692/mbbz4-e7w55","doi":"https://doi.org/10.60692/mbbz4-e7w55","is_oa":true,"landing_page_url":"https://doi.org/10.60692/mbbz4-e7w55","pdf_url":null,"source":{"id":"https://openalex.org/S7407051682","display_name":"Greater South Information System","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1186/1475-2875-13-102","doi":"https://doi.org/10.1186/1475-2875-13-102","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1475-2875-13-102","pdf_url":"https://malariajournal.biomedcentral.com/counter/pdf/10.1186/1475-2875-13-102","source":{"id":"https://openalex.org/S93003929","display_name":"Malaria Journal","issn_l":"1475-2875","issn":["1475-2875"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Malaria Journal","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.9391000270843506,"display_name":"Good health and well-being"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G7004411822","display_name":"Understanding the genetic basis of common human diseases: core funding for the Wellcome Trust Centre for Human Genetics.","funder_award_id":"090532","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G7192663222","display_name":null,"funder_award_id":"985220","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G9000897436","display_name":"Program for Resistance, Immunology, Surveillance & Modeling of Malaria in Uganda (PRISM) Renewal","funder_award_id":"U19AI089674","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320320290","display_name":"University of Oxford","ror":"https://ror.org/052gg0110"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2081875665.pdf","grobid_xml":"https://content.openalex.org/works/W2081875665.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1528708126","https://openalex.org/W1964931574","https://openalex.org/W1983063429","https://openalex.org/W1984669077","https://openalex.org/W2009258477","https://openalex.org/W2019358007","https://openalex.org/W2020465799","https://openalex.org/W2027028586","https://openalex.org/W2038522569","https://openalex.org/W2045656233","https://openalex.org/W2046780074","https://openalex.org/W2074147832","https://openalex.org/W2079451231","https://openalex.org/W2081729133","https://openalex.org/W2088791835","https://openalex.org/W2099198335","https://openalex.org/W2105309374","https://openalex.org/W2117293769","https://openalex.org/W2118726600","https://openalex.org/W2123470783","https://openalex.org/W2124634096","https://openalex.org/W2130150593","https://openalex.org/W2132093894","https://openalex.org/W2135926190","https://openalex.org/W2141125668","https://openalex.org/W2142282487","https://openalex.org/W2145808088","https://openalex.org/W2155925360","https://openalex.org/W2161311583","https://openalex.org/W2168521097","https://openalex.org/W2172184176","https://openalex.org/W2218230993","https://openalex.org/W2582743722","https://openalex.org/W2917195474"],"related_works":["https://openalex.org/W2906570338","https://openalex.org/W2065792002","https://openalex.org/W4297009335","https://openalex.org/W2130150593","https://openalex.org/W2105309374","https://openalex.org/W7099807616","https://openalex.org/W2142282487","https://openalex.org/W7220247797","https://openalex.org/W2117293769","https://openalex.org/W4408486279"],"abstract_inverted_index":{"BACKGROUND:":[0],"Reliable":[1],"measures":[2],"of":[3,31,37,42,61,65,78,92,96,109,166,185,233,292,295,336,342],"anti-malarial":[4,337],"resistance":[5,186,300,343],"are":[6,27,128],"crucial":[7],"for":[8,29,103,194,333],"malaria":[9,68,308],"control.":[10],"Resistance":[11],"is":[12,57,114],"typically":[13],"a":[14,20,38,51,58,104,159,250,330],"complex":[15],"trait:":[16],"multiple":[17,72],"mutations":[18],"in":[19,45,149,176,236,244],"single":[21],"parasite":[22,43,47,73],"(a":[23],"haplotype":[24,54],"or":[25,55,107],"genotype)":[26,56],"necessary":[28],"elaboration":[30],"the":[32,46,150,167,204,212,227,234,241,245,258,261,267,270,293],"resistant":[33],"phenotype.":[34],"The":[35,178,199,285,310,326],"frequency":[36,294],"genetic":[39,142,205,296],"motif":[40,143,206],"(proportion":[41,95],"clones":[44],"population":[48],"that":[49,100,122,203,208,263],"carry":[50],"given":[52,105],"allele,":[53],"useful":[59],"measure":[60],"resistance.":[62],"In":[63],"areas":[64],"high":[66],"endemicity,":[67],"patients":[69],"generally":[70],"harbour":[71],"clones;":[74],"they":[75],"have":[76,123],"multiplicities":[77],"infection":[79],"(MOIs)":[80],"greater":[81],"than":[82,219],"one.":[83],"However,":[84],"most":[85],"standard":[86],"experimental":[87],"procedures":[88],"only":[89],"allow":[90],"measurement":[91],"marker":[93,118],"prevalence":[94,119,146,181,304],"patient":[97,246,255],"blood":[98,256],"samples":[99],"test":[101],"positive":[102],"mutation":[106],"combination":[108],"mutations),":[110],"not":[111,230,313],"frequency.":[112],"It":[113],"misleading":[115],"to":[116,138,187,301,344],"compare":[117],"between":[120],"sites":[121,175],"different":[124],"mean":[125],"MOIs;":[126],"frequencies":[127,144,207,274],"required":[129],"instead.":[130],"METHODS:":[131],"A":[132],"Bayesian":[133],"statistical":[134],"model":[135,154,168,213,228,259,268,286,311,327],"was":[136,163,169],"developed":[137],"estimate":[139,193],"Plasmodium":[140],"falciparum":[141],"from":[145,173,307,323],"data":[147,182,262,305,322],"collected":[148,306],"field.":[151],"To":[152],"assess":[153],"performance":[155],"and":[156,189,217,269,277,318,347],"computational":[157],"speed,":[158],"detailed":[160],"simulation":[161,200],"study":[162,196,201],"implemented.":[164],"Application":[165],"tested":[170],"using":[171,211,303],"datasets":[172,179],"five":[174,324],"Uganda.":[177],"included":[180,252],"on":[183,223],"markers":[184,335,341],"sulphadoxine-pyrimethamine":[188],"an":[190],"average":[191,242],"MOI":[192,235,243,316],"each":[195,237],"site.":[197],"RESULTS:":[198],"revealed":[202],"were":[209,214,264,275,282],"estimated":[210,276],"more":[215],"accurate":[216],"precise":[218],"conventional":[220],"estimates":[221],"based":[222],"direct":[224],"counting.":[225],"Importantly,":[226],"did":[229],"require":[231,314],"measurements":[232,317],"patient;":[238],"it":[239],"used":[240],"population.":[247],"Furthermore,":[248],"if":[249],"dataset":[251],"partially":[253],"genotyped":[254],"samples,":[257],"imputed":[260],"missing.":[265],"Using":[266],"Ugandan":[271],"data,":[272],"genotype":[273],"four":[278],"biologically":[279],"relevant":[280],"genotypes":[281],"identified.":[283],"CONCLUSIONS:":[284],"allows":[287],"fast,":[288],"accurate,":[289],"reliable":[290],"estimation":[291],"motifs":[297],"associated":[298],"with":[299],"anti-malarials":[302],"patients.":[309],"does":[312],"per-patient":[315],"can":[319],"easily":[320],"analyse":[321],"markers.":[325],"will":[328],"be":[329],"valuable":[331],"tool":[332],"monitoring":[334],"drug":[338],"resistance,":[339],"including":[340],"artemisinin":[345],"derivatives":[346],"partner":[348],"drugs.":[349]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":4}],"updated_date":"2026-11-03T10:50:19.383937","created_date":"2016-06-24T00:00:00"}
