{"id":"https://openalex.org/W2074567907","doi":"https://doi.org/10.1016/j.polymer.2003.10.091","title":"Three-dimensional threading approach to protein structure recognition","display_name":"Three-dimensional threading approach to protein structure recognition","publication_year":2003,"publication_date":"2003-12-05","ids":{"openalex":"https://openalex.org/W2074567907","doi":"https://doi.org/10.1016/j.polymer.2003.10.091","mag":"2074567907"},"language":"en","primary_location":{"id":"doi:10.1016/j.polymer.2003.10.091","doi":"https://doi.org/10.1016/j.polymer.2003.10.091","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.polymer.2003.10.091","pdf_url":null,"source":{"id":"https://openalex.org/S186054908","display_name":"Polymer","issn_l":"0032-3861","issn":["0032-3861","1873-2291"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","jufo-1","norway-1","poland-100","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Polymer","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062447125","display_name":"Haibo Cao","orcid":"https://orcid.org/0000-0003-2973-2363","observed_orcids":["https://orcid.org/0000-0003-2973-2363"]},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Haibo Cao","raw_affiliation_strings":["Department of Physics and Astronomy, Iowa State University, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy, Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082256797","display_name":"Yungok Ihm","orcid":"https://orcid.org/0000-0002-8070-0757","observed_orcids":["https://orcid.org/0000-0002-8070-0757"]},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yungok Ihm","raw_affiliation_strings":["Department of Physics and Astronomy, Iowa State University, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy, Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081762465","display_name":"Cai\u2010Zhuang Wang","orcid":"https://orcid.org/0000-0002-0269-4785","observed_orcids":["https://orcid.org/0000-0002-0269-4785"]},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]},{"id":"https://openalex.org/I2802789608","display_name":"Ames National Laboratory","ror":"https://ror.org/041m9xr71","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I173911158","https://openalex.org/I2802789608","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cai-Zhuang Wang","raw_affiliation_strings":["Ames Laboratory-U.S. DOE., Iowa State University, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ames Laboratory-U.S. DOE., Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158","https://openalex.org/I2802789608"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084941815","display_name":"James Robert Morris","orcid":"https://orcid.org/0000-0002-8464-9047","observed_orcids":["https://orcid.org/0000-0002-8464-9047"]},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]},{"id":"https://openalex.org/I2802789608","display_name":"Ames National Laboratory","ror":"https://ror.org/041m9xr71","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I173911158","https://openalex.org/I2802789608","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James R. Morris","raw_affiliation_strings":["Ames Laboratory-U.S. DOE., Iowa State University, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ames Laboratory-U.S. DOE., Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158","https://openalex.org/I2802789608"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Mehmet Su","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mehmet Su","raw_affiliation_strings":["Department of Physics and Astronomy, Iowa State University, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy, Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074103258","display_name":"Drena L Dobbs","orcid":"https://orcid.org/0000-0003-4404-9554","observed_orcids":["https://orcid.org/0000-0003-4404-9554"]},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Drena Dobbs","raw_affiliation_strings":["Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA","Department of Genetics, Development and Cell Biology, Iowa State University, Ames,#N#                  IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Department of Genetics, Development and Cell Biology, Iowa State University, Ames,#N#                  IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069234338","display_name":"Kai\u2010Ming Ho","orcid":"https://orcid.org/0000-0003-2703-0560","observed_orcids":["https://orcid.org/0000-0003-2703-0560"]},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kai-Ming Ho","raw_affiliation_strings":["Department of Physics and Astronomy, Iowa State University, Ames, IA 50011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics and Astronomy, Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5069234338"],"corresponding_institution_ids":["https://openalex.org/I173911158"],"apc_list":{"value":3980,"currency":"USD","value_usd":3980},"apc_paid":null,"fwci":0.4713,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.53005182,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":96},"biblio":{"volume":"45","issue":"2","first_page":"687","last_page":"697"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.004100000020116568,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.000699999975040555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-structure-recognition","display_name":"protein structure recognition","score":0.8090000152587891},{"id":"https://openalex.org/keywords/gapped-alignment","display_name":"gapped alignment","score":0.6169999837875366},{"id":"https://openalex.org/keywords/contact-matrix","display_name":"contact matrices","score":0.5090000033378601},{"id":"https://openalex.org/keywords/dominant-eigenvector","display_name":"dominant eigenvector","score":0.8690000176429749},{"id":"https://openalex.org/keywords/sequence-structure-alignment","display_name":"sequence-structure alignment","score":0.9520000219345093},{"id":"https://openalex.org/keywords/structural-homology","display_name":"structural homology","score":0.8859999775886536},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"protein structure prediction","score":0.6650000214576721}],"concepts":[{"id":"https://openalex.org/C200307862","wikidata":"https://www.wikidata.org/wiki/Q7797175","display_name":"Threading (protein sequence)","level":3,"score":0.9336906671524048},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5899692177772522},{"id":"https://openalex.org/C4668613","wikidata":"https://www.wikidata.org/wiki/Q4116110","display_name":"Structural alignment","level":5,"score":0.5831043720245361},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.5715071558952332},{"id":"https://openalex.org/C45475804","wikidata":"https://www.wikidata.org/wiki/Q6675846","display_name":"Loop modeling","level":4,"score":0.5567044019699097},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.5247659683227539},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5238012075424194},{"id":"https://openalex.org/C169627665","wikidata":"https://www.wikidata.org/wiki/Q5767913","display_name":"Homology modeling","level":3,"score":0.4868420958518982},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4805898666381836},{"id":"https://openalex.org/C158693339","wikidata":"https://www.wikidata.org/wiki/Q190524","display_name":"Eigenvalues and eigenvectors","level":2,"score":0.46056514978408813},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.44953495264053345},{"id":"https://openalex.org/C2779315201","wikidata":"https://www.wikidata.org/wiki/Q414601","display_name":"Sequence homology","level":4,"score":0.4365033507347107},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4028075039386749},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3302024304866791},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33011913299560547},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.25097930431365967},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13866031169891357},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11664563417434692},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.10704740881919861},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.06459656357765198},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1016/j.polymer.2003.10.091","doi":"https://doi.org/10.1016/j.polymer.2003.10.091","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.polymer.2003.10.091","pdf_url":null,"source":{"id":"https://openalex.org/S186054908","display_name":"Polymer","issn_l":"0032-3861","issn":["0032-3861","1873-2291"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","jufo-1","norway-1","poland-100","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Polymer","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W33851185","https://openalex.org/W157808733","https://openalex.org/W1493873683","https://openalex.org/W1547596077","https://openalex.org/W1594583051","https://openalex.org/W1975017420","https://openalex.org/W1977896564","https://openalex.org/W1978496948","https://openalex.org/W1979754565","https://openalex.org/W1983758346","https://openalex.org/W1984527736","https://openalex.org/W1999669514","https://openalex.org/W2003204624","https://openalex.org/W2009745580","https://openalex.org/W2011495938","https://openalex.org/W2016411902","https://openalex.org/W2021350329","https://openalex.org/W2027323314","https://openalex.org/W2033496784","https://openalex.org/W2040594319","https://openalex.org/W2040823078","https://openalex.org/W2041966417","https://openalex.org/W2045777307","https://openalex.org/W2047974333","https://openalex.org/W2053289371","https://openalex.org/W2054849588","https://openalex.org/W2056211756","https://openalex.org/W2065117679","https://openalex.org/W2074231493","https://openalex.org/W2074732152","https://openalex.org/W2085277871","https://openalex.org/W2087064593","https://openalex.org/W2098387581","https://openalex.org/W2104192260","https://openalex.org/W2104533281","https://openalex.org/W2126377763","https://openalex.org/W2133072662","https://openalex.org/W2136739161","https://openalex.org/W2139279375","https://openalex.org/W2144483796","https://openalex.org/W2145358391","https://openalex.org/W2147039336","https://openalex.org/W2158714788","https://openalex.org/W2162980843","https://openalex.org/W2171546617","https://openalex.org/W2171755502","https://openalex.org/W4231445346","https://openalex.org/W4246356731","https://openalex.org/W6601640858"],"related_works":["https://openalex.org/W2139279375","https://openalex.org/W2064336918","https://openalex.org/W2160879227","https://openalex.org/W2063058848","https://openalex.org/W1517280616","https://openalex.org/W4235658974","https://openalex.org/W2032737594","https://openalex.org/W7100788065","https://openalex.org/W1813816512","https://openalex.org/W7095995076"],"abstract_inverted_index":null,"counts_by_year":[{"year":2018,"cited_by_count":2}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}