{"id":"https://openalex.org/W2063216907","doi":"https://doi.org/10.4161/trns.2.1.14228","title":"New discoveries linking transcription to DNA repair and damage tolerance pathways","display_name":"New discoveries linking transcription to DNA repair and damage tolerance pathways","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2063216907","doi":"https://doi.org/10.4161/trns.2.1.14228","mag":"2063216907","pmid":"https://pubmed.ncbi.nlm.nih.gov/21326909","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/3023646"},"language":"en","primary_location":{"id":"doi:10.4161/trns.2.1.14228","doi":"https://doi.org/10.4161/trns.2.1.14228","is_oa":true,"landing_page_url":"https://doi.org/10.4161/trns.2.1.14228","pdf_url":null,"source":{"id":"https://openalex.org/S4210168212","display_name":"Transcription","issn_l":"2154-1264","issn":["2154-1264","2154-1272"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","jufo-1","medline","norway-1","poland-40","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547","https://openalex.org/P4310320449"],"host_organization_lineage_names":["Taylor & Francis","Informa"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Transcription","raw_type":"journal-article"},"volume":null,"type":"review","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.4161/trns.2.1.14228","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048589988","display_name":"Susan Cohen","orcid":"https://orcid.org/0000-0003-1783-0011","observed_orcids":["https://orcid.org/0000-0003-1783-0011","https://orcid.org/0000-0003-3487-1990"]},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Susan E. Cohen","raw_affiliation_strings":["Department of Biology, Massachusetts Institute of Technology, Cambridge, USA","Cambridge, MA USA","Department of Biology","Massachusetts Institute of Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Massachusetts Institute of Technology, Cambridge, USA","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Cambridge, MA USA","institution_ids":[]},{"raw_affiliation_string":"Department of Biology","institution_ids":[]},{"raw_affiliation_string":"Massachusetts Institute of Technology","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112719442","display_name":"Graham Charles Walker","orcid":"https://orcid.org/0000-0001-7243-8261","observed_orcids":["https://orcid.org/0000-0001-7243-8261"]},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Graham C. Walker","raw_affiliation_strings":["Department of Biology; Massachusetts Institute of Technology; Cambridge, Massachusetts USA","Cambridge, Massachusetts USA","Department of Biology","Massachusetts Institute of Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology; Massachusetts Institute of Technology; Cambridge, Massachusetts USA","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Cambridge, Massachusetts USA","institution_ids":[]},{"raw_affiliation_string":"Department of Biology","institution_ids":[]},{"raw_affiliation_string":"Massachusetts Institute of Technology","institution_ids":["https://openalex.org/I63966007"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5112719442"],"corresponding_institution_ids":["https://openalex.org/I63966007"],"apc_list":null,"apc_paid":null,"fwci":0.2309,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.17590322,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"2","issue":"1","first_page":"37","last_page":"40"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10123","display_name":"DNA Repair Mechanisms","score":0.9564999938011169,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10123","display_name":"DNA Repair Mechanisms","score":0.9564999938011169,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.040800001472234726,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.0010999999940395355,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nusa","display_name":"NusA","score":0.9950000047683716},{"id":"https://openalex.org/keywords/transcription-elongation","display_name":"transcription elongation","score":0.9259999990463257},{"id":"https://openalex.org/keywords/dna-repair","display_name":"DNA repair","score":0.8379999995231628},{"id":"https://openalex.org/keywords/damage-tolerance","display_name":"damage tolerance","score":0.9610000252723694},{"id":"https://openalex.org/keywords/transcription-termination","display_name":"transcription termination","score":0.8939999938011169},{"id":"https://openalex.org/keywords/antitermination","display_name":"antitermination","score":0.9800000190734863},{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.8730000257492065}],"concepts":[{"id":"https://openalex.org/C42943712","wikidata":"https://www.wikidata.org/wiki/Q583802","display_name":"Antitermination","level":5,"score":0.7310447096824646},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.6130193471908569},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5435436367988586},{"id":"https://openalex.org/C134935766","wikidata":"https://www.wikidata.org/wiki/Q210538","display_name":"DNA repair","level":3,"score":0.5317299365997314},{"id":"https://openalex.org/C143425029","wikidata":"https://www.wikidata.org/wiki/Q5205747","display_name":"DNA damage","level":3,"score":0.5298701524734497},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.5179956555366516},{"id":"https://openalex.org/C64350747","wikidata":"https://www.wikidata.org/wiki/Q15334993","display_name":"RNA polymerase II","level":5,"score":0.45229825377464294},{"id":"https://openalex.org/C199728103","wikidata":"https://www.wikidata.org/wiki/Q959053","display_name":"Transcription bubble","level":5,"score":0.4518321752548218},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.45158132910728455},{"id":"https://openalex.org/C2776449523","wikidata":"https://www.wikidata.org/wiki/Q272631","display_name":"RNA polymerase","level":4,"score":0.43832871317863464},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.4355742037296295},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4231809973716736},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.3223814070224762},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.15826666355133057},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14674684405326843},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.09567990899085999},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D004249","descriptor_name":"DNA Damage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004260","descriptor_name":"DNA Repair","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010445","descriptor_name":"Peptide Elongation Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010445","descriptor_name":"Peptide Elongation Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010445","descriptor_name":"Peptide Elongation Factors","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D012321","descriptor_name":"DNA-Directed RNA Polymerases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D035602","descriptor_name":"Transcriptional Elongation Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.4161/trns.2.1.14228","doi":"https://doi.org/10.4161/trns.2.1.14228","is_oa":true,"landing_page_url":"https://doi.org/10.4161/trns.2.1.14228","pdf_url":null,"source":{"id":"https://openalex.org/S4210168212","display_name":"Transcription","issn_l":"2154-1264","issn":["2154-1264","2154-1272"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","jufo-1","medline","norway-1","poland-40","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547","https://openalex.org/P4310320449"],"host_organization_lineage_names":["Taylor & Francis","Informa"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Transcription","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3023646","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3023646","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Transcription","raw_type":"Text"},{"id":"pmid:21326909","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21326909","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Transcription","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.4161/trns.2.1.14228","doi":"https://doi.org/10.4161/trns.2.1.14228","is_oa":true,"landing_page_url":"https://doi.org/10.4161/trns.2.1.14228","pdf_url":null,"source":{"id":"https://openalex.org/S4210168212","display_name":"Transcription","issn_l":"2154-1264","issn":["2154-1264","2154-1272"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","jufo-1","medline","norway-1","poland-40","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547","https://openalex.org/P4310320449"],"host_organization_lineage_names":["Taylor & Francis","Informa"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Transcription","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G3909382221","display_name":"MIT Center for Environmental Health Sciences","funder_award_id":"P30ES002109","funder_id":"https://openalex.org/F4320337361","funder_display_name":"National Institute of Environmental Health Sciences"},{"id":"https://openalex.org/G8022458919","display_name":"Mutagenesis and Repair of DNA","funder_award_id":"R01CA021615","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320306095","display_name":"American Cancer Society","ror":"https://ror.org/02e463172"},{"id":"https://openalex.org/F4320322014","display_name":"Ministry of Food and Drug Safety","ror":"https://ror.org/01f7dp456"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337361","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W192412398","https://openalex.org/W1491876634","https://openalex.org/W1515304043","https://openalex.org/W1573311539","https://openalex.org/W1573998958","https://openalex.org/W1967851661","https://openalex.org/W1971687743","https://openalex.org/W1973517823","https://openalex.org/W1977843995","https://openalex.org/W1984353960","https://openalex.org/W1984459901","https://openalex.org/W1987958662","https://openalex.org/W1996884728","https://openalex.org/W2000826427","https://openalex.org/W2000905326","https://openalex.org/W2003778374","https://openalex.org/W2005129633","https://openalex.org/W2006568501","https://openalex.org/W2016430241","https://openalex.org/W2019009046","https://openalex.org/W2023596735","https://openalex.org/W2032358899","https://openalex.org/W2038800061","https://openalex.org/W2046174296","https://openalex.org/W2049353359","https://openalex.org/W2054425128","https://openalex.org/W2056325178","https://openalex.org/W2057276918","https://openalex.org/W2057691240","https://openalex.org/W2064268735","https://openalex.org/W2070426133","https://openalex.org/W2075318985","https://openalex.org/W2078717569","https://openalex.org/W2083806934","https://openalex.org/W2084788778","https://openalex.org/W2091960966","https://openalex.org/W2102334286","https://openalex.org/W2121407329","https://openalex.org/W2139216037","https://openalex.org/W2141403674","https://openalex.org/W2142513910","https://openalex.org/W2148736158","https://openalex.org/W2150677022","https://openalex.org/W2153139649","https://openalex.org/W2159916488","https://openalex.org/W2162832688","https://openalex.org/W2168044649"],"related_works":["https://openalex.org/W2091960966","https://openalex.org/W6983836514","https://openalex.org/W2162832688","https://openalex.org/W7218000761","https://openalex.org/W2325016771","https://openalex.org/W2141403674","https://openalex.org/W2610884259","https://openalex.org/W192412398","https://openalex.org/W1886592267","https://openalex.org/W2075006581"],"abstract_inverted_index":{"In":[0],"Escherichia":[1],"coli,":[2],"the":[3,32],"transcription":[4,19,45],"elongation":[5],"factor":[6],"NusA":[7,30],"is":[8],"associated":[9],"with":[10],"all":[11],"elongating":[12],"RNA":[13],"polymerases":[14],"where":[15],"it":[16],"functions":[17],"in":[18,31],"termination":[20],"and":[21,37],"antitermination.":[22],"Here,":[23],"we":[24],"review":[25],"our":[26],"recent":[27],"results":[28],"implicating":[29],"recruitment":[33],"of":[34,43],"DNA":[35],"repair":[36],"damage":[38],"tolerance":[39],"mechanisms":[40],"to":[41],"sites":[42],"stalled":[44],"complexes.":[46]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-11-06T12:05:46.655746","created_date":"2016-06-24T00:00:00"}
