{"id":"https://openalex.org/W2052011617","doi":"https://doi.org/10.1128/microbiolspec.cm-0012-12","title":"Towards an Ecosystem Approach to Cheese Microbiology","display_name":"Towards an Ecosystem Approach to Cheese Microbiology","publication_year":2013,"publication_date":"2013-10-31","ids":{"openalex":"https://openalex.org/W2052011617","doi":"https://doi.org/10.1128/microbiolspec.cm-0012-12","mag":"2052011617","pmid":"https://pubmed.ncbi.nlm.nih.gov/26184819"},"language":"en","primary_location":{"id":"doi:10.1128/microbiolspec.cm-0012-12","doi":"https://doi.org/10.1128/microbiolspec.cm-0012-12","is_oa":false,"landing_page_url":"https://doi.org/10.1128/microbiolspec.cm-0012-12","pdf_url":null,"source":{"id":"https://openalex.org/S2764766708","display_name":"Microbiology Spectrum","issn_l":"2165-0497","issn":["2165-0497"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology Spectrum","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007999872","display_name":"Benjamin E. Wolfe","orcid":"https://orcid.org/0000-0002-0194-9336","observed_orcids":["https://orcid.org/0000-0002-0194-9336"]},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210155419","display_name":"Center for Systems Biology","ror":"https://ror.org/05r3dyn47","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210155419","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin E. Wolfe","raw_affiliation_strings":["FAS Center for Systems Biology, Harvard University, Cambridge, MA 02138"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"FAS Center for Systems Biology, Harvard University, Cambridge, MA 02138","institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4210155419"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088939514","display_name":"Rachel J. Dutton","orcid":"https://orcid.org/0000-0002-2944-2182","observed_orcids":["https://orcid.org/0000-0002-2944-2182"]},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210155419","display_name":"Center for Systems Biology","ror":"https://ror.org/05r3dyn47","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210155419","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rachel J. Dutton","raw_affiliation_strings":["FAS Center for Systems Biology, Harvard University, Cambridge, MA 02138"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"FAS Center for Systems Biology, Harvard University, Cambridge, MA 02138","institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4210155419"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2500,"currency":"USD","value_usd":2500},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.11349104,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"1","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.271699994802475,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.271699994802475,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.1889999955892563,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.08839999884366989,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cheese-microbiology","display_name":"cheese microbiology","score":0.968999981880188},{"id":"https://openalex.org/keywords/microbial-ecosystems","display_name":"microbial ecosystems","score":0.5820000171661377},{"id":"https://openalex.org/keywords/microbial-interactions","display_name":"microbial interactions","score":0.5239999890327454},{"id":"https://openalex.org/keywords/systems-biology","display_name":"systems biology","score":0.5860000252723694},{"id":"https://openalex.org/keywords/next-generation-sequencing","display_name":"next-generation sequencing","score":0.8899999856948853},{"id":"https://openalex.org/keywords/microbial-community-evolution","display_name":"microbial community evolution","score":0.6600000262260437}],"concepts":[{"id":"https://openalex.org/C110872660","wikidata":"https://www.wikidata.org/wiki/Q37813","display_name":"Ecosystem","level":2,"score":0.775337815284729},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5035557150840759},{"id":"https://openalex.org/C58941895","wikidata":"https://www.wikidata.org/wiki/Q295865","display_name":"Ecosystem services","level":3,"score":0.4667779505252838},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4645393192768097},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.4420855641365051},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3482711911201477},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33667153120040894},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.32690906524658203},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.18435189127922058},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1128/microbiolspec.cm-0012-12","doi":"https://doi.org/10.1128/microbiolspec.cm-0012-12","is_oa":false,"landing_page_url":"https://doi.org/10.1128/microbiolspec.cm-0012-12","pdf_url":null,"source":{"id":"https://openalex.org/S2764766708","display_name":"Microbiology Spectrum","issn_l":"2165-0497","issn":["2165-0497"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology Spectrum","raw_type":"journal-article"},{"id":"pmid:26184819","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26184819","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology spectrum","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W1505202322","https://openalex.org/W1974646274","https://openalex.org/W1975651596","https://openalex.org/W1978647329","https://openalex.org/W1985544238","https://openalex.org/W1991700666","https://openalex.org/W1994885597","https://openalex.org/W2004933643","https://openalex.org/W2005964648","https://openalex.org/W2007680944","https://openalex.org/W2009377721","https://openalex.org/W2011428499","https://openalex.org/W2015334134","https://openalex.org/W2018995298","https://openalex.org/W2032604387","https://openalex.org/W2041365136","https://openalex.org/W2042411773","https://openalex.org/W2049094395","https://openalex.org/W2051915802","https://openalex.org/W2056932987","https://openalex.org/W2059674129","https://openalex.org/W2064959073","https://openalex.org/W2080283023","https://openalex.org/W2085162310","https://openalex.org/W2087610532","https://openalex.org/W2091232725","https://openalex.org/W2099121906","https://openalex.org/W2100195325","https://openalex.org/W2102278073","https://openalex.org/W2113601822","https://openalex.org/W2114548104","https://openalex.org/W2118166877","https://openalex.org/W2124637227","https://openalex.org/W2125383400","https://openalex.org/W2131376026","https://openalex.org/W2131567479","https://openalex.org/W2134801485","https://openalex.org/W2139469924","https://openalex.org/W2142735254","https://openalex.org/W2143285777","https://openalex.org/W2145002913","https://openalex.org/W2145336165","https://openalex.org/W2147378425","https://openalex.org/W2154736508","https://openalex.org/W2154936985","https://openalex.org/W2158797036","https://openalex.org/W2167062509","https://openalex.org/W2171214502","https://openalex.org/W2171309014","https://openalex.org/W2171411897","https://openalex.org/W3165420072","https://openalex.org/W4246645615"],"related_works":["https://openalex.org/W4391630081","https://openalex.org/W4300377615","https://openalex.org/W54818826","https://openalex.org/W4296943668","https://openalex.org/W1994864690","https://openalex.org/W7065079935","https://openalex.org/W4293186449","https://openalex.org/W2225476155","https://openalex.org/W2997453475","https://openalex.org/W4298135119"],"abstract_inverted_index":{"Cheese":[0],"is":[1],"an":[2,124,218],"ideal":[3],"environment":[4,37],"to":[5,32,62,79,84,144,150,165,178,196,205,216,232,250],"serve":[6],"as":[7,88,126,128,241],"a":[8,230,242,248],"model":[9,189,243],"for":[10,53],"the":[11,20,36,41,58,110,114,118,129,170,185,197,206,214,223,255],"behavior":[12],"of":[13,43,55,60,70,104,123,132,199,208,225,260],"microbes":[14,200],"in":[15,35,40,169,180,201],"complex":[16],"communities":[17,48,236],"and":[18,29,116,147,159,175,258],"at":[19],"same":[21],"time":[22,176],"allow":[23],"detailed":[24],"genetic":[25],"analysis.":[26],"Linking":[27],"organisms,":[28],"their":[30,33,148],"genes,":[31],"role":[34,198],"becomes":[38],"possible":[39,143,164],"case":[42],"cheese":[44,46,209,231,234,240],"since":[45],"microbial":[47,210,227,235,244,261],"have":[49,74,213],"been":[50],"\"in":[51],"culture\"":[52],"thousands":[54],"years,":[56],"with":[57,102],"knowledge":[59],"how":[61,167],"grow":[63],"these":[64,154],"organisms":[65],"passed":[66],"down":[67],"by":[68],"generations":[69],"cheesemakers.":[71],"Recent":[72],"reviews":[73],"described":[75],"several":[76],"emerging":[77],"approaches":[78,92,155],"link":[80,145],"molecular":[81,130],"systems":[82],"biology":[83,220],"ecosystem-scale":[85],"processes,":[86],"known":[87],"ecosystems":[89,181,219],"biology.":[90],"These":[91],"integrate":[93],"massive":[94],"datasets":[95,108],"now":[96],"available":[97],"through":[98],"high-throughput":[99],"sequencing":[100],"technologies":[101],"measurements":[103],"ecosystem":[105,125,151,202,245],"properties.":[106,152],"High-throughput":[107],"uncover":[109],"\"parts":[111],"list\"":[112],"(e.g.,":[113],"species":[115,146,186],"all":[117],"genes":[119],"within":[120,134,188,229],"each":[121],"species)":[122],"well":[127],"basis":[131],"interactions":[133,149],"this":[135],"parts":[136,171],"list.":[137],"Novel":[138],"computational":[139],"frameworks":[140],"make":[141],"it":[142,163],"Applying":[153],"across":[156,237],"multiple":[157],"temporal":[158],"spatial":[160],"scales":[161],"makes":[162],"understand":[166],"changes":[168,179],"lists":[172],"over":[173],"space":[174],"lead":[177],"processes.":[182],"By":[183],"manipulating":[184],"present":[187],"systems,":[190],"we":[191,212],"can":[192,246],"test":[193],"hypotheses":[194],"related":[195],"function.":[203],"Due":[204],"tractability":[207],"communities,":[211],"opportunity":[215],"use":[217],"approach":[221],"from":[222],"scale":[224],"individual":[226],"cells":[228],"replicated":[233],"continents.":[238],"Using":[239],"provide":[247],"way":[249],"answer":[251],"important":[252],"questions":[253],"concerning":[254],"form,":[256],"function,":[257],"evolution":[259],"communities.":[262]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2}],"updated_date":"2026-10-16T09:59:22.235173","created_date":"2016-06-24T00:00:00"}