{"id":"https://openalex.org/W2043714862","doi":"https://doi.org/10.1371/journal.pone.0000484","title":"Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies","display_name":"Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies","publication_year":2007,"publication_date":"2007-05-30","ids":{"openalex":"https://openalex.org/W2043714862","doi":"https://doi.org/10.1371/journal.pone.0000484","mag":"2043714862","pmid":"https://pubmed.ncbi.nlm.nih.gov/17534434","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/1871613"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pone.0000484","doi":"https://doi.org/10.1371/journal.pone.0000484","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0000484","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0000484&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS ONE","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0000484&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111892825","display_name":"Andreas Sundquist","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Andreas Sundquist","raw_affiliation_strings":["Department of Computer Science, Stanford University, Stanford, California, United States of America. asundqui@cs.stanford.edu","Department of Computer Science, Stanford University, Stanford, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stanford University, Stanford, California, United States of America. asundqui@cs.stanford.edu","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Computer Science, Stanford University, Stanford, California, United States of America","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081602366","display_name":"Mostafa Ronaghi","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mostafa Ronaghi","raw_affiliation_strings":["Stanford Genome Technology Center, Stanford, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford Genome Technology Center, Stanford, California, United States of America","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078007096","display_name":"Haixu Tang","orcid":"https://orcid.org/0000-0001-8963-8155","observed_orcids":["https://orcid.org/0000-0001-8963-8155"]},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I592451","display_name":"Indiana University","ror":"https://ror.org/01kg8sb98","country_code":"US","type":"education","lineage":["https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Haixu Tang","raw_affiliation_strings":["School of Informatics, Indiana University, Bloomington, Indiana, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics, Indiana University, Bloomington, Indiana, United States of America","institution_ids":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027480961","display_name":"Pavel A. Pevzner","orcid":"https://orcid.org/0000-0002-0418-165X","observed_orcids":["https://orcid.org/0000-0002-0418-165X"]},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pavel Pevzner","raw_affiliation_strings":["Department of Computer Science and Engineering, University of California, San Diego, La Jolla, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of California, San Diego, La Jolla, California, United States of America","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108224144","display_name":"Serafim Batzoglou","orcid":"https://orcid.org/0009-0009-1513-8452","observed_orcids":["https://orcid.org/0009-0009-1513-8452"]},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Serafim Batzoglou","raw_affiliation_strings":["Department of Computer Science, Stanford University, Stanford, California, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stanford University, Stanford, California, United States of America","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5111892825"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":{"value":2382,"currency":"USD","value_usd":2382},"apc_paid":{"value":2382,"currency":"USD","value_usd":2382},"fwci":8.2691,"has_fulltext":true,"cited_by_count":135,"citation_normalized_percentile":{"value":0.98863529,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":99},"biblio":{"volume":"2","issue":"5","first_page":"e484","last_page":"e484"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/2614","display_name":"Theoretical Computer Science"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/de-novo-genome-assembly","display_name":"de novo genome assembly","score":0.8939999938011169},{"id":"https://openalex.org/keywords/short-read-sequencing","display_name":"short-read sequencing","score":0.9559999704360962},{"id":"https://openalex.org/keywords/local-assemblies","display_name":"local assemblies","score":0.421999990940094},{"id":"https://openalex.org/keywords/repetitive-genomes","display_name":"repetitive genomes","score":0.5139999985694885},{"id":"https://openalex.org/keywords/mammalian-genomes","display_name":"mammalian genomes","score":0.5950000286102295},{"id":"https://openalex.org/keywords/human-genome","display_name":"human genome","score":0.5680000185966492},{"id":"https://openalex.org/keywords/drosophila-melanogaster","display_name":"Drosophila melanogaster","score":0.953000009059906},{"id":"https://openalex.org/keywords/sequencing-cost-reduction","display_name":"sequencing cost reduction","score":0.4300000071525574}],"concepts":[{"id":"https://openalex.org/C113425843","wikidata":"https://www.wikidata.org/wiki/Q5953213","display_name":"Hybrid genome assembly","level":5,"score":0.8585270047187805},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.7890467643737793},{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.6828685402870178},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.632375955581665},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.5993319153785706},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5431075096130371},{"id":"https://openalex.org/C81089528","wikidata":"https://www.wikidata.org/wiki/Q5134986","display_name":"clone (Java method)","level":3,"score":0.5321335792541504},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.509606122970581},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.49977707862854004},{"id":"https://openalex.org/C192800701","wikidata":"https://www.wikidata.org/wiki/Q6784807","display_name":"Massive parallel sequencing","level":4,"score":0.4731142222881317},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.44418802857398987},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.43836697936058044},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.40863901376724243},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3325898051261902},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14437276124954224},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pone.0000484","doi":"https://doi.org/10.1371/journal.pone.0000484","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0000484","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0000484&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS ONE","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1871613","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1871613","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS One","raw_type":"Text"},{"id":"pmid:17534434","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17534434","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PloS one","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.106.4601","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.106.4601","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://proteomics.bioprojects.org/pavel/papers/whole_genome.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.276.2514","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.276.2514","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/96/89/PLoS_ONE_2007_May_30_2(5)_e484.tar.gz","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:ab80936f3c4a4460ae28e8fceb6878b0","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/ab80936f3c4a4460ae28e8fceb6878b0","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS ONE, Vol 2, Iss 5, p e484 (2007)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pone.0000484","doi":"https://doi.org/10.1371/journal.pone.0000484","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0000484","pdf_url":"https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0000484&type=printable","source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS ONE","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G2934024386","display_name":"Development of 10 Gb Pyrosequencer","funder_award_id":"R01HG003571","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2043714862.pdf","grobid_xml":"https://content.openalex.org/works/W2043714862.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1525091092","https://openalex.org/W1541767983","https://openalex.org/W1608297032","https://openalex.org/W1635391495","https://openalex.org/W1971403296","https://openalex.org/W1981445345","https://openalex.org/W1983159842","https://openalex.org/W1984021931","https://openalex.org/W1990601349","https://openalex.org/W1994057432","https://openalex.org/W1998579923","https://openalex.org/W2005187240","https://openalex.org/W2023152910","https://openalex.org/W2027518075","https://openalex.org/W2032379826","https://openalex.org/W2042026038","https://openalex.org/W2047803783","https://openalex.org/W2053593722","https://openalex.org/W2054468433","https://openalex.org/W2093843227","https://openalex.org/W2097040991","https://openalex.org/W2115331920","https://openalex.org/W2117753040","https://openalex.org/W2125349979","https://openalex.org/W2127230663","https://openalex.org/W2128114769","https://openalex.org/W2131293761","https://openalex.org/W2136651963","https://openalex.org/W2138270253","https://openalex.org/W2144662851","https://openalex.org/W2151464048","https://openalex.org/W2155845142","https://openalex.org/W2165460636","https://openalex.org/W2168909179","https://openalex.org/W2170187602","https://openalex.org/W2171531867","https://openalex.org/W4230501579","https://openalex.org/W4254791011","https://openalex.org/W7099227288"],"related_works":["https://openalex.org/W2161546116","https://openalex.org/W1977744696","https://openalex.org/W1579534339","https://openalex.org/W7097370589","https://openalex.org/W70030202","https://openalex.org/W2951967514","https://openalex.org/W7096397089","https://openalex.org/W1539571741","https://openalex.org/W2612684011","https://openalex.org/W2001246517"],"abstract_inverted_index":{"While":[0],"recently":[1],"developed":[2],"short-read":[3,52,271],"sequencing":[4,10,26,34,44,60,261],"technologies":[5,272],"may":[6],"dramatically":[7],"reduce":[8],"the":[9,15,23,31,72,87,95,131,156,168,172,227,243,246],"cost":[11],"and":[12,46,81,92,112,133,161,197,202,204,213,226,241],"eventually":[13],"achieve":[14],"$1000":[16],"goal":[17],"for":[18],"re-sequencing,":[19],"their":[20],"limitations":[21],"prevent":[22],"de":[24,259],"novo":[25,260],"of":[27,144,155,158,210,245,249,262],"eukaryotic":[28],"genomes":[29,120,264],"with":[30,61,107,207,269],"standard":[32],"shotgun":[33],"protocol.":[35],"We":[36,54,100,187],"present":[37],"SHRAP":[38],"(SHort":[39],"Read":[40],"Assembly":[41],"Protocol),":[42],"a":[43,56,68,78,108,149,214],"protocol":[45],"assembly":[47,124,137,169,240],"methodology":[48,125],"that":[49,102,256],"utilizes":[50],"high-throughput":[51],"technologies.":[53],"describe":[55],"variation":[57],"on":[58,117,128,223],"hierarchical":[59],"two":[62],"crucial":[63],"differences:":[64],"(1)":[65,141],"we":[66,83,253],"select":[67],"clone":[69,150],"library":[70],"from":[71,86,94,184,194],"genome":[73,88],"randomly":[74],"rather":[75],"than":[76,148],"as":[77],"tiling":[79],"path":[80],"(2)":[82,152],"sample":[84],"clones":[85,96,132],"at":[89,97],"high":[90],"coverage":[91],"reads":[93,182,193],"low":[98],"coverage.":[99],"assume":[101],"200":[103],"bp":[104],"read":[105,136],"lengths":[106],"1%":[109],"error":[110],"rate":[111,216],"inexpensive":[113,258],"random":[114],"fragment":[115,239],"cloning":[116],"whole":[118],"mammalian":[119,263],"is":[121,126],"feasible.":[122],"Our":[123],"based":[127],"first":[129,173],"ordering":[130],"subsequently":[134],"performing":[135],"in":[138,178],"three":[139],"stages:":[140],"local":[142],"assemblies":[143,154,206],"regions":[145],"significantly":[146],"smaller":[147],"size,":[151],"clone-sized":[153],"results":[157],"stage":[159],"1,":[160,200],"(3)":[162],"chromosome-sized":[163],"assemblies.":[164,221],"By":[165],"aggressively":[166],"localizing":[167,238],"problem":[170],"during":[171],"stage,":[174],"our":[175,189,231,250,274],"method":[176,233],"succeeds":[177],"assembling":[179],"short,":[180],"unpaired":[181],"sampled":[183],"repetitive":[185],"genomes.":[186],"tested":[188],"assembler":[190],"using":[191,273],"simulated":[192],"D.":[195,224],"melanogaster":[196,225],"human":[198,229],"chromosomes":[199],"11,":[201],"21,":[203],"produced":[205],"large":[208],"sets":[209],"contiguous":[211],"sequence":[212],"misassembly":[215],"comparable":[217],"to":[218],"other":[219],"draft":[220],"Tested":[222],"entire":[228],"genome,":[230],"clone-ordering":[232],"produces":[234],"accurate":[235],"maps,":[236],"thereby":[237],"enabling":[242],"parallelization":[244],"subsequent":[247],"steps":[248],"pipeline.":[251],"Thus,":[252],"have":[254],"demonstrated":[255],"truly":[257],"will":[265],"soon":[266],"be":[267],"possible":[268],"high-throughput,":[270],"methodology.":[275]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":8}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2016-06-24T00:00:00"}
