{"id":"https://openalex.org/W2041662533","doi":"https://doi.org/10.1016/j.gene.2013.08.022","title":"Extreme nearly neutral evolution in mitochondrial genomes of laboratory mouse strains","display_name":"Extreme nearly neutral evolution in mitochondrial genomes of laboratory mouse strains","publication_year":2013,"publication_date":"2013-08-16","ids":{"openalex":"https://openalex.org/W2041662533","doi":"https://doi.org/10.1016/j.gene.2013.08.022","mag":"2041662533","pmid":"https://pubmed.ncbi.nlm.nih.gov/23954256"},"language":"en","primary_location":{"id":"doi:10.1016/j.gene.2013.08.022","doi":"https://doi.org/10.1016/j.gene.2013.08.022","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.gene.2013.08.022","pdf_url":null,"source":{"id":"https://openalex.org/S75702506","display_name":"Gene","issn_l":"0378-1119","issn":["0378-1119","1879-0038"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-d","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Gene","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066835812","display_name":"Takahiro Yonezawa","orcid":"https://orcid.org/0000-0002-0012-1887","observed_orcids":["https://orcid.org/0000-0002-0012-1887"]},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210134673","display_name":"The Institute of Statistical Mathematics","ror":"https://ror.org/03jcejr58","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210134673","https://openalex.org/I4210158934"]}],"countries":["CN","JP"],"is_corresponding":true,"raw_author_name":"Takahiro Yonezawa","raw_affiliation_strings":["School of Life Sciences, Fudan Univeristy, HanDan Rd. 220, Shanghai, 200433, China; Institute of the Statistical Mathematics, Midori-cho 10-3, Tachikawa, Tokyo, 190-8562, Japan. Electronic address: cyclotis@gmail.com","Institute of the Statistical Mathematics, Midori-cho 10-3, Tachikawa, Tokyo, 190-8562, Japan","School of Life Sciences, Fudan Univeristy, HanDan Rd. 220, Shanghai, 200433, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences, Fudan Univeristy, HanDan Rd. 220, Shanghai, 200433, China; Institute of the Statistical Mathematics, Midori-cho 10-3, Tachikawa, Tokyo, 190-8562, Japan. Electronic address: cyclotis@gmail.com","institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4210134673"]},{"raw_affiliation_string":"Institute of the Statistical Mathematics, Midori-cho 10-3, Tachikawa, Tokyo, 190-8562, Japan","institution_ids":["https://openalex.org/I4210134673"]},{"raw_affiliation_string":"School of Life Sciences, Fudan Univeristy, HanDan Rd. 220, Shanghai, 200433, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113914255","display_name":"Masami Hasegawa","orcid":"https://orcid.org/0009-0007-5772-7293","observed_orcids":["https://orcid.org/0009-0007-5772-7293"]},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210134673","display_name":"The Institute of Statistical Mathematics","ror":"https://ror.org/03jcejr58","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210134673","https://openalex.org/I4210158934"]}],"countries":["CN","JP"],"is_corresponding":false,"raw_author_name":"Masami Hasegawa","raw_affiliation_strings":["School of Life Sciences, Fudan Univeristy, HanDan Rd. 220, Shanghai, 200433, China; Institute of the Statistical Mathematics, Midori-cho 10-3, Tachikawa, Tokyo, 190-8562, Japan","Institute of the Statistical Mathematics, Midori-cho 10-3, Tachikawa, Tokyo, 190-8562, Japan","School of Life Sciences, Fudan Univeristy, HanDan Rd. 220, Shanghai, 200433, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences, Fudan Univeristy, HanDan Rd. 220, Shanghai, 200433, China; Institute of the Statistical Mathematics, Midori-cho 10-3, Tachikawa, Tokyo, 190-8562, Japan","institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4210134673"]},{"raw_affiliation_string":"Institute of the Statistical Mathematics, Midori-cho 10-3, Tachikawa, Tokyo, 190-8562, Japan","institution_ids":["https://openalex.org/I4210134673"]},{"raw_affiliation_string":"School of Life Sciences, Fudan Univeristy, HanDan Rd. 220, Shanghai, 200433, China","institution_ids":["https://openalex.org/I24943067"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5066835812"],"corresponding_institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4210134673"],"apc_list":{"value":3300,"currency":"USD","value_usd":3300},"apc_paid":null,"fwci":0.329,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.58657595,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":93},"biblio":{"volume":"534","issue":"2","first_page":"444","last_page":"448"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9272000193595886,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9272000193595886,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.026499999687075615,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.01720000058412552,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mitochondrial-genome","display_name":"mitochondrial genome","score":0.8109999895095825},{"id":"https://openalex.org/keywords/mouse-strains","display_name":"mouse strains","score":0.8539999723434448},{"id":"https://openalex.org/keywords/inbreeding","display_name":"inbreeding","score":0.7279999852180481},{"id":"https://openalex.org/keywords/domestication","display_name":"domestication","score":0.6050000190734863},{"id":"https://openalex.org/keywords/codon-position","display_name":"codon position","score":0.5669999718666077},{"id":"https://openalex.org/keywords/ribosomal-rna","display_name":"ribosomal RNA","score":0.6850000023841858},{"id":"https://openalex.org/keywords/control-region","display_name":"control region","score":0.9620000123977661},{"id":"https://openalex.org/keywords/slightly-deleterious-mutations","display_name":"slightly deleterious mutations","score":0.8220000267028809}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9164236783981323},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6873127818107605},{"id":"https://openalex.org/C2777949028","wikidata":"https://www.wikidata.org/wiki/Q25303868","display_name":"Rate of evolution","level":4,"score":0.6072319746017456},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5663391947746277},{"id":"https://openalex.org/C24586158","wikidata":"https://www.wikidata.org/wiki/Q27075","display_name":"Mitochondrial DNA","level":3,"score":0.5277705192565918},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.5154834389686584},{"id":"https://openalex.org/C7386963","wikidata":"https://www.wikidata.org/wiki/Q3954859","display_name":"Negative selection","level":4,"score":0.507764458656311},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.47301557660102844},{"id":"https://openalex.org/C87253356","wikidata":"https://www.wikidata.org/wiki/Q1106472","display_name":"Codon usage bias","level":4,"score":0.46836531162261963},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4029667377471924},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.3912103772163391}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012335","descriptor_name":"RNA, Ribosomal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012641","descriptor_name":"Selection, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019943","descriptor_name":"Amino Acid Substitution","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054629","descriptor_name":"Genome, Mitochondrial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.gene.2013.08.022","doi":"https://doi.org/10.1016/j.gene.2013.08.022","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.gene.2013.08.022","pdf_url":null,"source":{"id":"https://openalex.org/S75702506","display_name":"Gene","issn_l":"0378-1119","issn":["0378-1119","1879-0038"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-d","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Gene","raw_type":"journal-article"},{"id":"pmid:23954256","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23954256","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Gene","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G4331982147","display_name":"Problems in Estimating Divergence Times","funder_award_id":"25440219","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4965107928","display_name":null,"funder_award_id":"C25440219","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G7112812503","display_name":null,"funder_award_id":"C22570099","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W791550880","https://openalex.org/W1507241016","https://openalex.org/W1525464385","https://openalex.org/W1973101413","https://openalex.org/W1994535204","https://openalex.org/W2045983150","https://openalex.org/W2046551774","https://openalex.org/W2060115431","https://openalex.org/W2096420865","https://openalex.org/W2110335151","https://openalex.org/W2116111392","https://openalex.org/W2120979135","https://openalex.org/W2125852604","https://openalex.org/W2127847431","https://openalex.org/W2149240697","https://openalex.org/W2149941323","https://openalex.org/W2150080785","https://openalex.org/W2150933014","https://openalex.org/W2160918824","https://openalex.org/W2169533756","https://openalex.org/W2307037901","https://openalex.org/W2314370640","https://openalex.org/W7096506579"],"related_works":["https://openalex.org/W2019872526","https://openalex.org/W2057626485","https://openalex.org/W2064602201","https://openalex.org/W6929811775","https://openalex.org/W1973285776","https://openalex.org/W2125852604","https://openalex.org/W7097168005","https://openalex.org/W2097301372","https://openalex.org/W1985170765","https://openalex.org/W2016869821"],"abstract_inverted_index":null,"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}