{"id":"https://openalex.org/W2028096478","doi":"https://doi.org/10.1107/s0907444902020541","title":"Crystallization and preliminary X-ray analysis of a thermostable pectate lyase PL 47 fromBacillussp. TS 47","display_name":"Crystallization and preliminary X-ray analysis of a thermostable pectate lyase PL 47 fromBacillussp. TS 47","publication_year":2003,"publication_date":"2003-01-24","ids":{"openalex":"https://openalex.org/W2028096478","doi":"https://doi.org/10.1107/s0907444902020541","mag":"2028096478","pmid":"https://pubmed.ncbi.nlm.nih.gov/12554946"},"language":"en","primary_location":{"id":"doi:10.1107/s0907444902020541","doi":"https://doi.org/10.1107/s0907444902020541","is_oa":false,"landing_page_url":"https://doi.org/10.1107/s0907444902020541","pdf_url":null,"source":{"id":"https://openalex.org/S114502960","display_name":"Acta Crystallographica Section D Biological Crystallography","issn_l":"0907-4449","issn":["0907-4449","1399-0047"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Acta Crystallographica Section D Biological Crystallography","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041952856","display_name":"Tetsuko Nakaniwa","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I15807432","display_name":"Osaka Prefecture University","ror":"https://ror.org/02cf1je33","country_code":"JP","type":"education","lineage":["https://openalex.org/I15807432","https://openalex.org/I4387152983"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tetsuko Nakaniwa","raw_affiliation_strings":["Research Institute for Advanced Science and Technology, Osaka Prefecture University, Sakai, Osaka 599-8570, Japan. tetsuko@riast.osakafu-u.ac.jp","Research Institute for Advanced Science and Technology, Osaka Prefecture University, Sakai, Osaka 599\u20138570, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Institute for Advanced Science and Technology, Osaka Prefecture University, Sakai, Osaka 599-8570, Japan. tetsuko@riast.osakafu-u.ac.jp","institution_ids":["https://openalex.org/I15807432"]},{"raw_affiliation_string":"Research Institute for Advanced Science and Technology, Osaka Prefecture University, Sakai, Osaka 599\u20138570, Japan","institution_ids":["https://openalex.org/I15807432"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070495685","display_name":"Toshiji Tada","orcid":"https://orcid.org/0000-0002-5399-2571","observed_orcids":["https://orcid.org/0000-0002-5399-2571"]},"institutions":[{"id":"https://openalex.org/I15807432","display_name":"Osaka Prefecture University","ror":"https://ror.org/02cf1je33","country_code":"JP","type":"education","lineage":["https://openalex.org/I15807432","https://openalex.org/I4387152983"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Toshiji Tada","raw_affiliation_strings":["Research Institute for Advanced Science and Technology, Osaka Prefecture University, Sakai, Osaka 599-8570, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Institute for Advanced Science and Technology, Osaka Prefecture University, Sakai, Osaka 599-8570, Japan","institution_ids":["https://openalex.org/I15807432"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Keiko Ishii","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I15807432","display_name":"Osaka Prefecture University","ror":"https://ror.org/02cf1je33","country_code":"JP","type":"education","lineage":["https://openalex.org/I15807432","https://openalex.org/I4387152983"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Keiko Ishii","raw_affiliation_strings":["Research Institute for Advanced Science and Technology, Osaka Prefecture University, Sakai, Osaka 599-8570, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Institute for Advanced Science and Technology, Osaka Prefecture University, Sakai, Osaka 599-8570, Japan","institution_ids":["https://openalex.org/I15807432"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076400522","display_name":"Makoto Takao","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I916559398","display_name":"Kindai University","ror":"https://ror.org/05kt9ap64","country_code":"JP","type":"education","lineage":["https://openalex.org/I916559398"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Makoto Takao","raw_affiliation_strings":["Department of Food Science, Kinki University, Nakamachi, Nara 631-8505, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Food Science, Kinki University, Nakamachi, Nara 631-8505, Japan","institution_ids":["https://openalex.org/I916559398"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108405694","display_name":"Takuo Sakai","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I916559398","display_name":"Kindai University","ror":"https://ror.org/05kt9ap64","country_code":"JP","type":"education","lineage":["https://openalex.org/I916559398"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takuo Sakai","raw_affiliation_strings":["Department of Food Science, Kinki University, Nakamachi, Nara 631-8505, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Food Science, Kinki University, Nakamachi, Nara 631-8505, Japan","institution_ids":["https://openalex.org/I916559398"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110518229","display_name":"Keiichiro Nishimura","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I15807432","display_name":"Osaka Prefecture University","ror":"https://ror.org/02cf1je33","country_code":"JP","type":"education","lineage":["https://openalex.org/I15807432","https://openalex.org/I4387152983"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Keiichiro Nishimura","raw_affiliation_strings":["Research Institute for Advanced Science and Technology, Osaka Prefecture University, Sakai, Osaka 599-8570, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Institute for Advanced Science and Technology, Osaka Prefecture University, Sakai, Osaka 599-8570, Japan","institution_ids":["https://openalex.org/I15807432"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4740,"currency":"USD","value_usd":4740},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":93},"biblio":{"volume":"59","issue":"2","first_page":"341","last_page":"342"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9609000086784363,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9609000086784363,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10869","display_name":"Polysaccharides and Plant Cell Walls","score":0.03310000151395798,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11617","display_name":"Enzyme Production and Characterization","score":0.0032999999821186066,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pectate-lyase","display_name":"pectate lyase","score":0.8619999885559082},{"id":"https://openalex.org/keywords/thermostable-enzymes","display_name":"thermostable enzymes","score":0.9649999737739563},{"id":"https://openalex.org/keywords/protein-crystallization","display_name":"protein crystallization","score":0.8140000104904175},{"id":"https://openalex.org/keywords/hanging-drop-vapour-diffusion","display_name":"hanging-drop vapour-diffusion","score":0.8479999899864197},{"id":"https://openalex.org/keywords/molecular-replacement","display_name":"molecular replacement","score":0.8500000238418579}],"concepts":[{"id":"https://openalex.org/C2776681119","wikidata":"https://www.wikidata.org/wiki/Q24776974","display_name":"Pectate lyase","level":4,"score":0.9413965940475464},{"id":"https://openalex.org/C2777272437","wikidata":"https://www.wikidata.org/wiki/Q131238","display_name":"Bacillus subtilis","level":3,"score":0.7242305874824524},{"id":"https://openalex.org/C2776964284","wikidata":"https://www.wikidata.org/wiki/Q410083","display_name":"Polyethylene glycol","level":2,"score":0.6751723289489746},{"id":"https://openalex.org/C203036418","wikidata":"https://www.wikidata.org/wiki/Q284256","display_name":"Crystallization","level":2,"score":0.6704698801040649},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5804693102836609},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.5339438319206238},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.4382815361022949},{"id":"https://openalex.org/C54400483","wikidata":"https://www.wikidata.org/wiki/Q1793202","display_name":"PEG ratio","level":2,"score":0.4214444160461426},{"id":"https://openalex.org/C13965031","wikidata":"https://www.wikidata.org/wiki/Q243545","display_name":"Nuclear chemistry","level":1,"score":0.35039836168289185},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.2538050413131714},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2348128855228424},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.19604435563087463},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.14866280555725098},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12514597177505493},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C172854840","wikidata":"https://www.wikidata.org/wiki/Q419568","display_name":"Pectinase","level":3,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001407","descriptor_name":"Bacillus","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":true},{"descriptor_ui":"D003460","descriptor_name":"Crystallization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004795","descriptor_name":"Enzyme Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006358","descriptor_name":"Hot Temperature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011133","descriptor_name":"Polysaccharide-Lyases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011133","descriptor_name":"Polysaccharide-Lyases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D017356","descriptor_name":"Synchrotrons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1107/s0907444902020541","doi":"https://doi.org/10.1107/s0907444902020541","is_oa":false,"landing_page_url":"https://doi.org/10.1107/s0907444902020541","pdf_url":null,"source":{"id":"https://openalex.org/S114502960","display_name":"Acta Crystallographica Section D Biological Crystallography","issn_l":"0907-4449","issn":["0907-4449","1399-0047"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Acta Crystallographica Section D Biological Crystallography","raw_type":"journal-article"},{"id":"pmid:12554946","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12554946","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Acta crystallographica. Section D, Biological crystallography","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1961438086","https://openalex.org/W1967757020","https://openalex.org/W1977303228","https://openalex.org/W2013083986","https://openalex.org/W2014694459","https://openalex.org/W2045476844","https://openalex.org/W2060807817","https://openalex.org/W2079982261","https://openalex.org/W2080476827","https://openalex.org/W2152375291"],"related_works":["https://openalex.org/W2092377370","https://openalex.org/W2079982261","https://openalex.org/W1993436615","https://openalex.org/W2026472363","https://openalex.org/W2027489283","https://openalex.org/W2020763536","https://openalex.org/W2067803726","https://openalex.org/W1967757020","https://openalex.org/W7217098226","https://openalex.org/W2030440709"],"abstract_inverted_index":{"The":[0,33,58],"thermostable":[1],"pectate":[2,100],"lyase":[3,101],"PL":[4],"47":[5],"from":[6,76,102],"Bacillus":[7],"sp.":[8],"TS":[9],"47,":[10],"with":[11,42],"a":[12,45,77,106],"molecular":[13],"weight":[14],"of":[15,99],"50":[16],"kDa,":[17],"was":[18,80,94],"crystallized":[19],"by":[20],"the":[21,37,97],"hanging-drop":[22],"vapour-diffusion":[23],"method":[24],"using":[25,86,96],"2-propanol":[26],"and":[27],"polyethylene":[28],"glycol":[29],"4000":[30],"as":[31,105],"precipitants.":[32],"crystals":[34],"belong":[35],"to":[36,82],"trigonal":[38],"space":[39],"group":[40],"P3(1)21,":[41],"unit-cell":[43],"parameters":[44],"=":[46,48,51,55],"b":[47],"58.8,":[49],"c":[50],"229.7":[52],"A,":[53],"gamma":[54],"120":[56],"degrees.":[57],"calculated":[59],"V(M)":[60],"based":[61],"on":[62],"one":[63],"molecule":[64],"per":[65],"asymmetric":[66],"unit":[67],"is":[68],"2.30":[69],"A(3)":[70],"Da(-1).":[71],"A":[72,84,91],"native":[73],"data":[74],"set":[75],"frozen":[78],"crystal":[79],"collected":[81],"1.8":[83],"resolution":[85],"synchrotron":[87],"radiation":[88],"at":[89],"SPring-8.":[90],"molecular-replacement":[92],"solution":[93],"obtained":[95],"structure":[98],"B.":[103],"subtilis":[104],"model.":[107]},"counts_by_year":[{"year":2022,"cited_by_count":1}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2016-06-24T00:00:00"}
