{"id":"https://openalex.org/W2020343713","doi":"https://doi.org/10.1186/1471-2105-9-103","title":"Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics","display_name":"Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics","publication_year":2008,"publication_date":"2008-02-19","ids":{"openalex":"https://openalex.org/W2020343713","doi":"https://doi.org/10.1186/1471-2105-9-103","mag":"2020343713","pmid":"https://pubmed.ncbi.nlm.nih.gov/18282301","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/2270260"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-9-103","doi":"https://doi.org/10.1186/1471-2105-9-103","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-103","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-103","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","ccf-c","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-2","oarl","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-103","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086602697","display_name":"Indra Neil Sarkar","orcid":"https://orcid.org/0000-0003-2054-7356","observed_orcids":["https://orcid.org/0000-0003-2054-7356"]},"institutions":[{"id":"https://openalex.org/I1338920048","display_name":"Marine Biological Laboratory","ror":"https://ror.org/046dg4z72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1338920048"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Indra Neil Sarkar","raw_affiliation_strings":["MBLWHOI Library, Marine Biological Laboratory, Woods Hole, MA, USA. sarkar@mbl.edu","MBLWHOI Library, Marine Biological Laboratory, Woods Hole, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MBLWHOI Library, Marine Biological Laboratory, Woods Hole, MA, USA. sarkar@mbl.edu","institution_ids":["https://openalex.org/I1338920048"]},{"raw_affiliation_string":"MBLWHOI Library, Marine Biological Laboratory, Woods Hole, USA","institution_ids":["https://openalex.org/I1338920048"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026239660","display_name":"Mary G. Egan","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I166088655","display_name":"Montclair State University","ror":"https://ror.org/01nxc2t48","country_code":"US","type":"education","lineage":["https://openalex.org/I166088655"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mary G Egan","raw_affiliation_strings":["Department of Biology and Molecular Biology, Montclair State University, Montclair, NJ, USA","Montclair State University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology and Molecular Biology, Montclair State University, Montclair, NJ, USA","institution_ids":["https://openalex.org/I166088655"]},{"raw_affiliation_string":"Montclair State University","institution_ids":["https://openalex.org/I166088655"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025597505","display_name":"Gloria M. Coruzzi","orcid":"https://orcid.org/0000-0003-2608-2166","observed_orcids":["https://orcid.org/0000-0003-2608-2166"]},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gloria Coruzzi","raw_affiliation_strings":["Department of Biology, New York University, New York, NY, USA","Department of Biology, New York University, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, New York University, New York, NY, USA","institution_ids":["https://openalex.org/I57206974"]},{"raw_affiliation_string":"Department of Biology, New York University, New York, USA","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011649812","display_name":"Ernest K. Lee","orcid":"https://orcid.org/0000-0002-0974-7763","observed_orcids":["https://orcid.org/0000-0002-0974-7763"]},"institutions":[{"id":"https://openalex.org/I1338124936","display_name":"American Museum of Natural History","ror":"https://ror.org/03thb3e06","country_code":"US","type":"archive","lineage":["https://openalex.org/I1338124936"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ernest K Lee","raw_affiliation_strings":["Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, NY, USA","American Museum of Natural History"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, NY, USA","institution_ids":["https://openalex.org/I1338124936"]},{"raw_affiliation_string":"American Museum of Natural History","institution_ids":["https://openalex.org/I1338124936"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014686457","display_name":"R\u00f3b DeSalle","orcid":"https://orcid.org/0000-0002-6490-7109","observed_orcids":["https://orcid.org/0000-0002-6490-7109"]},"institutions":[{"id":"https://openalex.org/I1338124936","display_name":"American Museum of Natural History","ror":"https://ror.org/03thb3e06","country_code":"US","type":"archive","lineage":["https://openalex.org/I1338124936"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rob DeSalle","raw_affiliation_strings":["Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, NY, USA","American Museum of Natural History"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, NY, USA","institution_ids":["https://openalex.org/I1338124936"]},{"raw_affiliation_string":"American Museum of Natural History","institution_ids":["https://openalex.org/I1338124936"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5086602697"],"corresponding_institution_ids":["https://openalex.org/I1338920048"],"apc_list":{"value":2990,"currency":"USD","value_usd":2990},"apc_paid":{"value":2990,"currency":"USD","value_usd":2990},"fwci":1.918,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.84774713,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"9","issue":"1","first_page":"103","last_page":"103"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11879","display_name":"Protist diversity and phylogeny","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/asap","display_name":"ASAP","score":0.6169999837875366},{"id":"https://openalex.org/keywords/phylogenomics","display_name":"phylogenomics","score":0.8970000147819519},{"id":"https://openalex.org/keywords/automated-data-curation","display_name":"automated data curation","score":0.7289999723434448},{"id":"https://openalex.org/keywords/phylogenetic-hypothesis-testing","display_name":"phylogenetic hypothesis testing","score":0.8529999852180481},{"id":"https://openalex.org/keywords/species-interactions","display_name":"species interactions","score":0.7850000262260437}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7854781746864319},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.6752601861953735},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.6703786253929138},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6535207033157349},{"id":"https://openalex.org/C124388736","wikidata":"https://www.wikidata.org/wiki/Q3247497","display_name":"Tree of life (biology)","level":4,"score":0.6205886006355286},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.589625895023346},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5554846525192261},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5473341345787048},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.48494723439216614},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.47369953989982605},{"id":"https://openalex.org/C70343354","wikidata":"https://www.wikidata.org/wiki/Q3381973","display_name":"Phylogenomics","level":5,"score":0.44171181321144104},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.441037654876709},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3718137741088867},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36668452620506287},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.24162903428077698},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2233661413192749},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.09658220410346985},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.08188718557357788},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-9-103","doi":"https://doi.org/10.1186/1471-2105-9-103","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-103","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-103","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","ccf-c","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-2","oarl","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2270260","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2270260","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmid:18282301","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18282301","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:darchive.mblwhoilibrary.org:1912/2125","doi":null,"is_oa":true,"landing_page_url":"http://darchive.mblwhoilibrary.org/bitstreams/fc83c3ef-8cb4-54af-88f7-6b0e713509a7/download","pdf_url":null,"source":{"id":"https://openalex.org/S4306400781","display_name":"Open Access Server of the Woods Hole Scientific Community (Woods Hole Scientific Community)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:982c8a8c20b34765a10fffe099d322c8","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/982c8a8c20b34765a10fffe099d322c8","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 9, Iss 1, p 103 (2008)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-9-103","doi":"https://doi.org/10.1186/1471-2105-9-103","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-9-103","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-9-103","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","ccf-c","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-2","oarl","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G5565698707","display_name":"Genomics of Comparative Seed Evolution.","funder_award_id":"0421604","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306135","display_name":"Ellison Medical Foundation","ror":"https://ror.org/01pqy3846"},{"id":"https://openalex.org/F4320337398","display_name":"Division of Biological Infrastructure","ror":"https://ror.org/04qn9mx93"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2020343713.pdf","grobid_xml":"https://content.openalex.org/works/W2020343713.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1967464318","https://openalex.org/W1992877258","https://openalex.org/W2068225247","https://openalex.org/W2097588807","https://openalex.org/W2111445984","https://openalex.org/W2114606763","https://openalex.org/W2114617541","https://openalex.org/W2117695991","https://openalex.org/W2126763909","https://openalex.org/W2132926880","https://openalex.org/W2148931528","https://openalex.org/W2161823479"],"related_works":["https://openalex.org/W2139436782","https://openalex.org/W7098970744","https://openalex.org/W3092664098","https://openalex.org/W4311849722","https://openalex.org/W3008892108","https://openalex.org/W4401306601","https://openalex.org/W4389726854","https://openalex.org/W2022230612","https://openalex.org/W2159518151","https://openalex.org/W2345490230"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1],"availability":[2],"of":[3,12,21,38,41,44,53,69,98,104,111],"sequences":[4],"from":[5],"whole":[6],"genomes":[7],"to":[8,17,87,94,116,121],"reconstruct":[9],"the":[10,15,19,36,42,47,65,73,96,102],"tree":[11,43],"life":[13,45],"has":[14],"potential":[16],"enable":[18,114],"development":[20],"phylogenomic":[22,124],"hypotheses":[23,125],"in":[24,35,72],"ways":[25],"that":[26],"have":[27,77],"not":[28],"been":[29],"before":[30],"possible.":[31],"A":[32],"significant":[33],"bottleneck":[34],"analysis":[37],"genomic-scale":[39],"views":[40],"is":[46],"time":[48],"required":[49],"for":[50],"manual":[51],"curation":[52],"genomic":[54,74],"data":[55,71],"into":[56],"multi-gene":[57],"phylogenetic":[58,107],"matrices.":[59],"RESULTS:":[60],"To":[61],"keep":[62],"pace":[63],"with":[64],"exponentially":[66],"growing":[67],"volume":[68],"molecular":[70],"era,":[75],"we":[76],"developed":[78],"an":[79],"automated":[80],"technique,":[81],"ASAP":[82,112],"(Automated":[83],"Simultaneous":[84],"Analysis":[85],"Phylogenetics),":[86],"assemble":[88],"these":[89],"multigene/multi":[90],"species":[91,118],"matrices":[92],"and":[93,120],"evaluate":[95],"significance":[97],"individual":[99],"genes":[100],"within":[101],"context":[103],"a":[105],"given":[106],"hypothesis.":[108],"CONCLUSION:":[109],"Applications":[110],"may":[113],"scientists":[115],"re-evaluate":[117],"relationships":[119],"develop":[122],"new":[123],"based":[126],"on":[127],"genome-scale":[128],"data.":[129]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2016-06-24T00:00:00"}
