{"id":"https://openalex.org/W2018576067","doi":"https://doi.org/10.1021/bi00441a013","title":"Characterization of a parallel stranded DNA hairpin","display_name":"Characterization of a parallel stranded DNA hairpin","publication_year":1989,"publication_date":"1989-07-25","ids":{"openalex":"https://openalex.org/W2018576067","doi":"https://doi.org/10.1021/bi00441a013","mag":"2018576067","pmid":"https://pubmed.ncbi.nlm.nih.gov/2789997"},"language":"en","primary_location":{"id":"doi:10.1021/bi00441a013","doi":"https://doi.org/10.1021/bi00441a013","is_oa":false,"landing_page_url":"https://doi.org/10.1021/bi00441a013","pdf_url":null,"source":{"id":"https://openalex.org/S104038378","display_name":"Biochemistry","issn_l":"0006-2960","issn":["0006-2960","1520-4995","1943-295X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biochemistry","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060359400","display_name":"Markus W. Germann","orcid":"https://orcid.org/0000-0002-1674-8166","observed_orcids":["https://orcid.org/0000-0002-1674-8166"]},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Markus W. Germann","raw_affiliation_strings":["Department of Medical Biochemistry, University of Calgary, Alberta, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Biochemistry, University of Calgary, Alberta, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042190192","display_name":"Hans J. Vogel","orcid":"https://orcid.org/0000-0003-2404-9485","observed_orcids":["https://orcid.org/0000-0003-2404-9485"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hans J. Vogel","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003980982","display_name":"Richard T. Pon","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Richard T. Pon","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5108491194","display_name":"Johan H. van de Sande","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Johan H. van de Sande","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4500,"currency":"USD","value_usd":4500},"apc_paid":null,"fwci":1.6763,"has_fulltext":false,"cited_by_count":30,"citation_normalized_percentile":{"value":0.84886487,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"28","issue":"15","first_page":"6220","last_page":"6228"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/parallel-stranded-dna","display_name":"parallel-stranded DNA","score":0.9070000052452087},{"id":"https://openalex.org/keywords/right-handed-helix","display_name":"right-handed helix","score":0.8190000057220459},{"id":"https://openalex.org/keywords/base-stacking","display_name":"base stacking","score":0.6119999885559082},{"id":"https://openalex.org/keywords/imino-proton-exchange","display_name":"imino proton exchange","score":0.7210000157356262},{"id":"https://openalex.org/keywords/sugar-puckering","display_name":"sugar puckering","score":0.7300000190734863},{"id":"https://openalex.org/keywords/anti-conformation","display_name":"anti conformation","score":0.6340000033378601},{"id":"https://openalex.org/keywords/31p-nmr-spectroscopy","display_name":"31P NMR","score":0.7549999952316284},{"id":"https://openalex.org/keywords/circular-dichroism","display_name":"circular dichroism","score":0.8889999985694885},{"id":"https://openalex.org/keywords/noesy","display_name":"NOESY","score":0.7229999899864197},{"id":"https://openalex.org/keywords/drug-binding","display_name":"drug binding","score":0.4269999861717224}],"concepts":[{"id":"https://openalex.org/C2778805511","wikidata":"https://www.wikidata.org/wiki/Q1713","display_name":"Citation","level":2,"score":0.7081329822540283},{"id":"https://openalex.org/C2778447006","wikidata":"https://www.wikidata.org/wiki/Q1156474","display_name":"Icon","level":2,"score":0.55726158618927},{"id":"https://openalex.org/C518677369","wikidata":"https://www.wikidata.org/wiki/Q202833","display_name":"Social media","level":2,"score":0.5562694072723389},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5401718616485596},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4446815848350525},{"id":"https://openalex.org/C161191863","wikidata":"https://www.wikidata.org/wiki/Q199655","display_name":"Library science","level":1,"score":0.3596322536468506},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3384568989276886},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002942","descriptor_name":"Circular Dichroism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009682","descriptor_name":"Magnetic Resonance Spectroscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009691","descriptor_name":"Nucleic Acid Denaturation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009838","descriptor_name":"Oligodeoxyribonucleotides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/bi00441a013","doi":"https://doi.org/10.1021/bi00441a013","is_oa":false,"landing_page_url":"https://doi.org/10.1021/bi00441a013","pdf_url":null,"source":{"id":"https://openalex.org/S104038378","display_name":"Biochemistry","issn_l":"0006-2960","issn":["0006-2960","1520-4995","1943-295X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biochemistry","raw_type":"journal-article"},{"id":"pmid:2789997","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/2789997","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biochemistry","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W5140127","https://openalex.org/W1965093302","https://openalex.org/W1966071066","https://openalex.org/W1966807901","https://openalex.org/W1968360065","https://openalex.org/W1969776708","https://openalex.org/W1975222435","https://openalex.org/W1982286837","https://openalex.org/W1991335527","https://openalex.org/W1998394472","https://openalex.org/W2009160121","https://openalex.org/W2015532590","https://openalex.org/W2017731406","https://openalex.org/W2023611498","https://openalex.org/W2025763765","https://openalex.org/W2026480123","https://openalex.org/W2032682401","https://openalex.org/W2037783365","https://openalex.org/W2045928164","https://openalex.org/W2055162070","https://openalex.org/W2057306946","https://openalex.org/W2062975626","https://openalex.org/W2064393761","https://openalex.org/W2072249969","https://openalex.org/W2073101268","https://openalex.org/W2082545109","https://openalex.org/W2086158633","https://openalex.org/W2089981004","https://openalex.org/W2093700493","https://openalex.org/W2096577501","https://openalex.org/W2138223784","https://openalex.org/W2164527185","https://openalex.org/W2320850779"],"related_works":["https://openalex.org/W2089981004","https://openalex.org/W2417280676","https://openalex.org/W1966071066","https://openalex.org/W3105859178","https://openalex.org/W2113974436","https://openalex.org/W135994984","https://openalex.org/W2038996298","https://openalex.org/W2015532590","https://openalex.org/W2064393761","https://openalex.org/W7070270822"],"abstract_inverted_index":{"Recently":[0],"we":[1,34,226],"have":[2,35],"shown":[3],"that":[4,115,127,143,173,205,215,228,240],"synthetic":[5],"DNA":[6,49],"containing":[7],"homooligomeric":[8],"A-T":[9],"base":[10,175,178],"pairs":[11],"can":[12],"form":[13],"a":[14,73,120],"parallel-stranded":[15,47],"intramolecular":[16],"hairpin":[17,50,57,79,203,210],"structure":[18,44,118,137],"[van":[19],"de":[20],"Sande":[21],"et":[22],"al.":[23],"(1988)":[24],"Science":[25],"(Washington,":[26],"D.C.)":[27],"241,":[28],"551-557].":[29],"In":[30],"the":[31,43,46,53,63,66,78,92,116,128,131,135,145,159,169,190,201,206,217,221,229,232,236,241,246],"present":[32],"study,":[33],"employed":[36],"NMR":[37,124,198],"and":[38,52,83,96,158,168,177,182,239],"optical":[39],"spectroscopy":[40],"to":[41],"investigate":[42],"of":[45,62,86,94,130,134,144,150,161,200,208,216,223,231],"(PS)":[48],"3'-d(T)8C4(A)8-3'":[51],"related":[54],"antiparallel":[55],"(APS)":[56],"5'-d(T)8C4(A)8-3'.":[58],"The":[59,148],"parallel":[60],"orientation":[61,230],"strands":[64],"in":[65,77,100,108,186,196,235,245],"PS":[67,95,117,136,202],"oligonucleotide":[68],"is":[69,138,211,234,244],"achieved":[70],"by":[71],"introducing":[72],"5'-5'":[74],"phosphodiester":[75,132],"linkage":[76],"loop.":[80],"Ultraviolet":[81],"spectroscopic":[82],"fluorescence":[84],"data":[85],"drug":[87],"binding":[88],"are":[89],"consistent":[90],"with":[91,110],"formation":[93],"APS":[97,146,218],"structures,":[98],"respectively,":[99],"these":[101],"two":[102],"hairpins.":[103,188],"Vacuum":[104],"circular":[105],"dichroism":[106],"measurements":[107,125],"combination":[109],"theoretical":[111],"CD":[112],"calculations":[113],"indicate":[114,126],"forms":[119],"right-handed":[121],"helix.":[122],"31P":[123],"conformation":[129],"backbone":[133],"not":[139],"drastically":[140],"different":[141],"from":[142],"control.":[147],"presence":[149],"slowly":[151],"exchanging":[152],"imino":[153,166],"protons":[154,167,171],"at":[155],"14":[156],"ppm":[157],"observation":[160],"nuclear":[162],"Overhauser":[163],"enhancement":[164],"between":[165,180],"AH-2":[170],"demonstrate":[172],"similar":[174],"pairing":[176],"stacking":[179],"T":[181],"A":[183],"residues":[184],"occur":[185],"both":[187],"However,":[189],"small":[191],"chemical":[192],"shift":[193],"dispersion":[194],"observed":[195],"proton":[197],"spectra":[199],"suggests":[204],"stem":[207],"this":[209],"more":[212],"regular":[213],"than":[214],"hairpin.":[219],"On":[220],"basis":[222],"NOESY":[224],"measurements,":[225],"find":[227],"bases":[233],"anti":[237],"region":[238],"sugar":[242],"puckering":[243],"2'-endo":[247],"range.(ABSTRACT":[248],"TRUNCATED":[249],"AT":[250],"250":[251],"WORDS)":[252]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2016-06-24T00:00:00"}
