{"id":"https://openalex.org/W2018149277","doi":"https://doi.org/10.1186/1471-2164-15-866","title":"An RNA-Seq based gene expression atlas of the common bean","display_name":"An RNA-Seq based gene expression atlas of the common bean","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2018149277","doi":"https://doi.org/10.1186/1471-2164-15-866","mag":"2018149277","pmid":"https://pubmed.ncbi.nlm.nih.gov/25283805","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/4195886"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2164-15-866","doi":"https://doi.org/10.1186/1471-2164-15-866","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2164-15-866","pdf_url":"https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/1471-2164-15-866","source":{"id":"https://openalex.org/S28614077","display_name":"BMC Genomics","issn_l":"1471-2164","issn":["1471-2164"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/1471-2164-15-866","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000452545","display_name":"Jamie A. O\u2019Rourke","orcid":"https://orcid.org/0000-0003-2403-8946","observed_orcids":["https://orcid.org/0000-0003-2403-8946"]},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]},{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jamie A O\u2019Rourke","raw_affiliation_strings":["Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA","Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, USA","USDA-ARS, Corn Insect Crop Genetics Research Unit, Iowa State University, Ames, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"USDA-ARS, Corn Insect Crop Genetics Research Unit, Iowa State University, Ames, USA","institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048964475","display_name":"L. I\u00f1iguez","orcid":"https://orcid.org/0000-0002-1470-9024","observed_orcids":["https://orcid.org/0000-0002-1470-9024"]},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Luis P Iniguez","raw_affiliation_strings":["Centro de Ciencias Genomicas, Universidad Nacional Autonoma de Mexico, 66210, Cuernavaca, Mor, Mexico","Centro de Ciencias Genomicas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cuernavaca, Mexico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Ciencias Genomicas, Universidad Nacional Autonoma de Mexico, 66210, Cuernavaca, Mor, Mexico","institution_ids":["https://openalex.org/I8961855"]},{"raw_affiliation_string":"Centro de Ciencias Genomicas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cuernavaca, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069529740","display_name":"Fengli Fu","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fengli Fu","raw_affiliation_strings":["Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA","Department of Agronomy and Plant Genetics, University of Minnesota, St.\u00a0Paul, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"Department of Agronomy and Plant Genetics, University of Minnesota, St.\u00a0Paul, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060113872","display_name":"Bruna Bucciarelli","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]},{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bruna Bucciarelli","raw_affiliation_strings":["Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA","USDA-Agricultural Research Service, Plant Science Research Unit, St. Paul, MN, 55108, USA","Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, USA","USDA-Agricultural Research Service, Plant Science Research Unit, St. Paul, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"USDA-Agricultural Research Service, Plant Science Research Unit, St. Paul, MN, 55108, USA","institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"raw_affiliation_string":"Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"USDA-Agricultural Research Service, Plant Science Research Unit, St. Paul, USA","institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103393277","display_name":"Susan S. Miller","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]},{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Susan S Miller","raw_affiliation_strings":["Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA","USDA-Agricultural Research Service, Plant Science Research Unit, St. Paul, MN, 55108, USA","Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, USA","USDA-Agricultural Research Service, Plant Science Research Unit, St. Paul, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"USDA-Agricultural Research Service, Plant Science Research Unit, St. Paul, MN, 55108, USA","institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"raw_affiliation_string":"Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"USDA-Agricultural Research Service, Plant Science Research Unit, St. Paul, USA","institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101826297","display_name":"Scott A. Jackson","orcid":"https://orcid.org/0000-0002-3172-1607","observed_orcids":["https://orcid.org/0000-0002-3172-1607"]},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott A Jackson","raw_affiliation_strings":["Center for Applied Genetic Technologies, University of Georgia, Athens, GA, 30602, USA","Center for Applied Genetic Technologies, University of Georgia, Athens, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Applied Genetic Technologies, University of Georgia, Athens, GA, 30602, USA","institution_ids":["https://openalex.org/I165733156"]},{"raw_affiliation_string":"Center for Applied Genetic Technologies, University of Georgia, Athens, USA","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016308555","display_name":"Philip E. McClean","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I57328836","display_name":"North Dakota State University","ror":"https://ror.org/05h1bnb22","country_code":"US","type":"education","lineage":["https://openalex.org/I57328836"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Philip E McClean","raw_affiliation_strings":["Department of Plant Sciences, North Dakota State University, Fargo, ND, 58105, USA","Department of Plant Sciences, North Dakota State University, Fargo, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Sciences, North Dakota State University, Fargo, ND, 58105, USA","institution_ids":["https://openalex.org/I57328836"]},{"raw_affiliation_string":"Department of Plant Sciences, North Dakota State University, Fargo, USA","institution_ids":["https://openalex.org/I57328836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101694488","display_name":"Jun Li","orcid":"https://orcid.org/0000-0002-1285-6514","observed_orcids":["https://orcid.org/0000-0002-1285-6514"]},"institutions":[{"id":"https://openalex.org/I4210126540","display_name":"Noble Research Institute","ror":"https://ror.org/02zta5505","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210126540"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jun Li","raw_affiliation_strings":["Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK, 73401, USA","Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK, 73401, USA","institution_ids":["https://openalex.org/I4210126540"]},{"raw_affiliation_string":"Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, USA","institution_ids":["https://openalex.org/I4210126540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103136502","display_name":"Xinbin Dai","orcid":"https://orcid.org/0000-0001-8886-9875","observed_orcids":["https://orcid.org/0000-0001-8886-9875"]},"institutions":[{"id":"https://openalex.org/I4210126540","display_name":"Noble Research Institute","ror":"https://ror.org/02zta5505","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210126540"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xinbin Dai","raw_affiliation_strings":["Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK, 73401, USA","Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK, 73401, USA","institution_ids":["https://openalex.org/I4210126540"]},{"raw_affiliation_string":"Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, USA","institution_ids":["https://openalex.org/I4210126540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025380264","display_name":"Patrick Xuechun Zhao","orcid":"https://orcid.org/0000-0002-3460-5564","observed_orcids":["https://orcid.org/0000-0002-3460-5564"]},"institutions":[{"id":"https://openalex.org/I4210126540","display_name":"Noble Research Institute","ror":"https://ror.org/02zta5505","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210126540"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Patrick X Zhao","raw_affiliation_strings":["Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK, 73401, USA","Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK, 73401, USA","institution_ids":["https://openalex.org/I4210126540"]},{"raw_affiliation_string":"Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, USA","institution_ids":["https://openalex.org/I4210126540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041498623","display_name":"Georgina Hern\u00e1ndez","orcid":"https://orcid.org/0000-0001-6214-311X","observed_orcids":["https://orcid.org/0000-0001-6214-311X"]},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Georgina Hernandez","raw_affiliation_strings":["Centro de Ciencias Genomicas, Universidad Nacional Autonoma de Mexico, 66210, Cuernavaca, Mor, Mexico","Centro de Ciencias Genomicas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cuernavaca, Mexico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Ciencias Genomicas, Universidad Nacional Autonoma de Mexico, 66210, Cuernavaca, Mor, Mexico","institution_ids":["https://openalex.org/I8961855"]},{"raw_affiliation_string":"Centro de Ciencias Genomicas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cuernavaca, Mexico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103360959","display_name":"Carroll P. Vance","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carroll P Vance","raw_affiliation_strings":["Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA","Department of Agronomy and Plant Genetics, University of Minnesota, St.\u00a0Paul, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"Department of Agronomy and Plant Genetics, University of Minnesota, St.\u00a0Paul, USA","institution_ids":["https://openalex.org/I130238516"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5000452545"],"corresponding_institution_ids":["https://openalex.org/I130238516","https://openalex.org/I1312222531","https://openalex.org/I173911158"],"apc_list":{"value":3090,"currency":"USD","value_usd":3090},"apc_paid":{"value":3090,"currency":"USD","value_usd":3090},"fwci":17.4318,"has_fulltext":true,"cited_by_count":171,"citation_normalized_percentile":{"value":0.99484091,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":100},"biblio":{"volume":"15","issue":"1","first_page":"866","last_page":"866"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12115","display_name":"Genetic and Environmental Crop Studies","score":0.7627000212669373,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12115","display_name":"Genetic and Environmental Crop Studies","score":0.7627000212669373,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11470","display_name":"Legume Nitrogen Fixing Symbiosis","score":0.08030000329017639,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.048900000751018524,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/common-bean","display_name":"Phaseolus vulgaris","score":0.9959999918937683},{"id":"https://openalex.org/keywords/gene-expression-atlas","display_name":"gene expression atlas","score":0.9819999933242798},{"id":"https://openalex.org/keywords/tissue-specific-expression","display_name":"tissue-specific gene expression","score":0.9459999799728394},{"id":"https://openalex.org/keywords/root-nodulation","display_name":"root nodulation","score":0.8299999833106995},{"id":"https://openalex.org/keywords/seed-development","display_name":"seed development","score":0.7860000133514404},{"id":"https://openalex.org/keywords/nitrogen-source","display_name":"nitrogen source","score":0.7950000166893005},{"id":"https://openalex.org/keywords/nitrogen-assimilation","display_name":"nitrogen assimilation","score":0.875},{"id":"https://openalex.org/keywords/differentially-expressed-genes","display_name":"differentially expressed genes","score":0.8849999904632568}],"concepts":[{"id":"https://openalex.org/C2776286235","wikidata":"https://www.wikidata.org/wiki/Q310438","display_name":"Phaseolus","level":2,"score":0.9450947642326355},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8401293754577637},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.755899965763092},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.7249525785446167},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.5854272842407227},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5580271482467651},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.546254575252533},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.5292961597442627},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5260950326919556},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43522509932518005},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.20808836817741394}],"mesh":[{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013025","descriptor_name":"Glycine max","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018507","descriptor_name":"Gene Expression Regulation, Developmental","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018517","descriptor_name":"Plant Roots","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D027805","descriptor_name":"Phaseolus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D027805","descriptor_name":"Phaseolus","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2164-15-866","doi":"https://doi.org/10.1186/1471-2164-15-866","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2164-15-866","pdf_url":"https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/1471-2164-15-866","source":{"id":"https://openalex.org/S28614077","display_name":"BMC Genomics","issn_l":"1471-2164","issn":["1471-2164"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4195886","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4195886","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"Text"},{"id":"pmid:25283805","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25283805","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC genomics","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1186/1471-2164-15-866","doi":"https://doi.org/10.1186/1471-2164-15-866","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2164-15-866","pdf_url":"https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/1471-2164-15-866","source":{"id":"https://openalex.org/S28614077","display_name":"BMC Genomics","issn_l":"1471-2164","issn":["1471-2164"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Genomics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.7142999768257141,"id":"https://metadata.un.org/sdg/2"}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309636","display_name":"University of Minnesota","ror":"https://ror.org/03grvy078"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2018149277.pdf","grobid_xml":"https://content.openalex.org/works/W2018149277.grobid-xml"},"referenced_works_count":100,"referenced_works":["https://openalex.org/W149126344","https://openalex.org/W1533767717","https://openalex.org/W1626869794","https://openalex.org/W1790398017","https://openalex.org/W1915646558","https://openalex.org/W1944820832","https://openalex.org/W1951299002","https://openalex.org/W1965089178","https://openalex.org/W1965820528","https://openalex.org/W1967508425","https://openalex.org/W1970762697","https://openalex.org/W1972146704","https://openalex.org/W1982779630","https://openalex.org/W1983166173","https://openalex.org/W1984708728","https://openalex.org/W1989780650","https://openalex.org/W1990960161","https://openalex.org/W1991989015","https://openalex.org/W1992932825","https://openalex.org/W1993846687","https://openalex.org/W1995609921","https://openalex.org/W2008525609","https://openalex.org/W2009419055","https://openalex.org/W2012260721","https://openalex.org/W2012986985","https://openalex.org/W2014156088","https://openalex.org/W2015059969","https://openalex.org/W2016370480","https://openalex.org/W2021044098","https://openalex.org/W2021123883","https://openalex.org/W2022514401","https://openalex.org/W2025119870","https://openalex.org/W2028278773","https://openalex.org/W2028833004","https://openalex.org/W2030612764","https://openalex.org/W2034206097","https://openalex.org/W2035298204","https://openalex.org/W2038749716","https://openalex.org/W2047144846","https://openalex.org/W2053758959","https://openalex.org/W2057945124","https://openalex.org/W2059105183","https://openalex.org/W2070516629","https://openalex.org/W2074363252","https://openalex.org/W2074665339","https://openalex.org/W2077650355","https://openalex.org/W2077809181","https://openalex.org/W2086491289","https://openalex.org/W2088673572","https://openalex.org/W2089008216","https://openalex.org/W2089660511","https://openalex.org/W2091358620","https://openalex.org/W2093387105","https://openalex.org/W2093851679","https://openalex.org/W2094490427","https://openalex.org/W2095272389","https://openalex.org/W2095594212","https://openalex.org/W2098234703","https://openalex.org/W2101218969","https://openalex.org/W2103498575","https://openalex.org/W2106629711","https://openalex.org/W2107925322","https://openalex.org/W2108522414","https://openalex.org/W2109389042","https://openalex.org/W2109764708","https://openalex.org/W2109931944","https://openalex.org/W2111022336","https://openalex.org/W2115487059","https://openalex.org/W2120287165","https://openalex.org/W2121095739","https://openalex.org/W2123836320","https://openalex.org/W2124985265","https://openalex.org/W2126707901","https://openalex.org/W2130357866","https://openalex.org/W2131698263","https://openalex.org/W2132063003","https://openalex.org/W2132970959","https://openalex.org/W2135541455","https://openalex.org/W2136325182","https://openalex.org/W2137261859","https://openalex.org/W2139838547","https://openalex.org/W2142478510","https://openalex.org/W2142906634","https://openalex.org/W2143510463","https://openalex.org/W2153497656","https://openalex.org/W2154431984","https://openalex.org/W2154462685","https://openalex.org/W2156017482","https://openalex.org/W2156032987","https://openalex.org/W2158656211","https://openalex.org/W2158918882","https://openalex.org/W2161106528","https://openalex.org/W2162077247","https://openalex.org/W2164698489","https://openalex.org/W2166199949","https://openalex.org/W2166967975","https://openalex.org/W2168428619","https://openalex.org/W2168728371","https://openalex.org/W2169929045","https://openalex.org/W2171781018"],"related_works":["https://openalex.org/W1993846687","https://openalex.org/W2131698263","https://openalex.org/W7120345446","https://openalex.org/W2009419055","https://openalex.org/W7100296390","https://openalex.org/W2777739132","https://openalex.org/W2909049113","https://openalex.org/W1021438642","https://openalex.org/W7130676427","https://openalex.org/W7098350970"],"abstract_inverted_index":{"BACKGROUND:":[0],"Common":[1],"bean":[2,58],"(Phaseolus":[3],"vulgaris)":[4],"is":[5],"grown":[6],"throughout":[7,112,295],"the":[8,15,38,89,113,151,191,218,240,250,288,296],"world":[9],"and":[10,104,126,142,167,278,285,293],"comprises":[11],"roughly":[12],"50%":[13],"of":[14,37,53,63,193,226,229,267,283,287],"grain":[16],"legumes":[17],"consumed":[18],"worldwide.":[19],"Despite":[20],"this,":[21],"genetic":[22],"resources":[23,76],"for":[24,77,232,252],"common":[25,48,57,264],"beans":[26],"have":[27,130,198],"been":[28],"lacking.":[29],"Next":[30],"generation":[31],"sequencing,":[32],"has":[33,270,279],"facilitated":[34],"our":[35,61,281],"investigation":[36],"gene":[39,54,64,82,90,223,228,254],"expression":[40,55,65,91,110,182,224,255],"profiles":[41,225],"associated":[42],"with":[43,84,136,181],"biologically":[44],"important":[45,102,273],"traits":[46],"in":[47,56,67,165,172,202,235,242,263,274],"bean.":[49,265],"An":[50],"increased":[51,280],"understanding":[52,62,282],"will":[59,258],"improve":[60],"patterns":[66,92,111,183],"other":[68],"legume":[69],"species.":[70],"RESULTS:":[71],"Combining":[72],"recently":[73],"developed":[74],"genomic":[75,261],"Phaseolus":[78,208],"vulgaris,":[79],"including":[80],"predicted":[81],"calls,":[83],"RNA-Seq":[85],"technology,":[86],"we":[87,197],"measured":[88],"from":[93,97,105],"24":[94],"samples":[95],"collected":[96],"seven":[98],"tissues":[99,149],"at":[100,150],"developmentally":[101],"stages":[103],"three":[106],"nitrogen":[107,127,289],"treatments.":[108],"Gene":[109,210],"plant":[114],"were":[115],"analyzed":[116],"to":[117,122,163,186],"better":[118],"understand":[119],"changes":[120,164],"due":[121,162],"nodulation,":[123],"seed":[124,276],"development,":[125,166],"utilization.":[128],"We":[129],"identified":[131,178,271],"11,010":[132],"genes":[133,156,169,180,233,272],"differentially":[134,157],"expressed":[135,158,170,234],"a":[137,143,160,173,203,243,253],"fold":[138],"change":[139],"\u2265":[140],"2":[141],"P-value":[144],"<":[145],"0.05":[146],"between":[147],"different":[148,236],"same":[152],"time":[153],"point,":[154],"15,752":[155],"within":[159],"tissue":[161],"2,315":[168],"only":[171],"single":[174],"tissue.":[175],"These":[176,247],"analyses":[177],"2,970":[179],"that":[184],"appear":[185],"be":[187],"directly":[188],"dependent":[189],"on":[190,291],"source":[192,290],"available":[194,205],"nitrogen.":[195],"Finally,":[196],"assembled":[199],"this":[200,268],"data":[201,248],"publicly":[204],"database,":[206],"The":[207],"vulgaris":[209],"Expression":[211],"Atlas":[212],"(Pv":[213],"GEA),":[214],"http://plantgrn.noble.org/PvGEA/":[215],".":[216],"Using":[217],"website,":[219],"researchers":[220],"can":[221],"query":[222],"their":[227],"interest,":[230],"search":[231],"tissues,":[237],"or":[238],"download":[239],"dataset":[241,269],"tabular":[244],"form.":[245],"CONCLUSIONS:":[246],"provide":[249],"basis":[251],"atlas,":[256],"which":[257],"facilitate":[259],"functional":[260],"studies":[262],"Analysis":[266],"regulating":[275],"composition":[277],"nodulation":[284],"impact":[286],"assimilation":[292],"distribution":[294],"plant.":[297]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":19},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":16},{"year":2018,"cited_by_count":16},{"year":2017,"cited_by_count":17},{"year":2016,"cited_by_count":17},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":1}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2016-06-24T00:00:00"}