{"id":"https://openalex.org/W2017759529","doi":"https://doi.org/10.1534/g3.112.002048","title":"Incidence of Genome Structure, DNA Asymmetry, and Cell Physiology on T-DNA Integration in Chromosomes of the Phytopathogenic Fungus Leptosphaeria maculans","display_name":"Incidence of Genome Structure, DNA Asymmetry, and Cell Physiology on T-DNA Integration in Chromosomes of the Phytopathogenic Fungus Leptosphaeria maculans","publication_year":2012,"publication_date":"2012-08-01","ids":{"openalex":"https://openalex.org/W2017759529","doi":"https://doi.org/10.1534/g3.112.002048","mag":"2017759529","pmid":"https://pubmed.ncbi.nlm.nih.gov/22908038","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/3411245"},"language":"en","primary_location":{"id":"doi:10.1534/g3.112.002048","doi":"https://doi.org/10.1534/g3.112.002048","is_oa":true,"landing_page_url":"https://doi.org/10.1534/g3.112.002048","pdf_url":"https://academic.oup.com/g3journal/article-pdf/2/8/891/37069714/g3journal0891.pdf","source":{"id":"https://openalex.org/S109822313","display_name":"G3 Genes Genomes Genetics","issn_l":"2160-1836","issn":["2160-1836"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310319844","host_organization_name":"Genetics Society of America","host_organization_lineage":["https://openalex.org/P4310319844"],"host_organization_lineage_names":["Genetics Society of America"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"G3 Genes|Genomes|Genetics","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/g3journal/article-pdf/2/8/891/37069714/g3journal0891.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002660449","display_name":"Salim Bourras","orcid":"https://orcid.org/0000-0003-0855-5433","observed_orcids":["https://orcid.org/0000-0003-0855-5433"]},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210134313","display_name":"Biologie et gestion des champignons phytopathog\u00e8nes","ror":"https://ror.org/049q30t56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I4210088668","https://openalex.org/I4210134313"]},{"id":"https://openalex.org/I4387154544","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/01x3gbx83","country_code":"FR","type":"funder","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4387154544"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Salim Bourras","raw_affiliation_strings":["Institut National de la Recherche Agronomique (INRA), Research Unit 1290 BIOGER, F-78850 Thiverval-Grignon, France, and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut National de la Recherche Agronomique (INRA), Research Unit 1290 BIOGER, F-78850 Thiverval-Grignon, France, and","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210134313","https://openalex.org/I4387154544"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111643271","display_name":"Michel Meyer","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210134313","display_name":"Biologie et gestion des champignons phytopathog\u00e8nes","ror":"https://ror.org/049q30t56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I4210088668","https://openalex.org/I4210134313"]},{"id":"https://openalex.org/I4387154544","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/01x3gbx83","country_code":"FR","type":"funder","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4387154544"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Michel Meyer","raw_affiliation_strings":["Institut National de la Recherche Agronomique (INRA), Research Unit 1290 BIOGER, F-78850 Thiverval-Grignon, France, and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut National de la Recherche Agronomique (INRA), Research Unit 1290 BIOGER, F-78850 Thiverval-Grignon, France, and","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210134313","https://openalex.org/I4387154544"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060520688","display_name":"Jonathan Grandaubert","orcid":"https://orcid.org/0000-0001-7235-0550","observed_orcids":["https://orcid.org/0000-0001-7235-0550"]},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210134313","display_name":"Biologie et gestion des champignons phytopathog\u00e8nes","ror":"https://ror.org/049q30t56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I4210088668","https://openalex.org/I4210134313"]},{"id":"https://openalex.org/I4387154544","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/01x3gbx83","country_code":"FR","type":"funder","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4387154544"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jonathan Grandaubert","raw_affiliation_strings":["Institut National de la Recherche Agronomique (INRA), Research Unit 1290 BIOGER, F-78850 Thiverval-Grignon, France, and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut National de la Recherche Agronomique (INRA), Research Unit 1290 BIOGER, F-78850 Thiverval-Grignon, France, and","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210134313","https://openalex.org/I4387154544"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080800744","display_name":"Nicolas Lapalu","orcid":"https://orcid.org/0000-0002-9773-4611","observed_orcids":["https://orcid.org/0000-0002-9773-4611"]},"institutions":[{"id":"https://openalex.org/I4210134313","display_name":"Biologie et gestion des champignons phytopathog\u00e8nes","ror":"https://ror.org/049q30t56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I4210088668","https://openalex.org/I4210134313"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Nicolas Lapalu","raw_affiliation_strings":["INRA, Research Unit 1290 BIOGER, F-78026 Versailles Cedex, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRA, Research Unit 1290 BIOGER, F-78026 Versailles Cedex, France","institution_ids":["https://openalex.org/I4210134313"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079741355","display_name":"Isabelle Fudal","orcid":"https://orcid.org/0000-0002-9105-9432","observed_orcids":["https://orcid.org/0000-0002-9105-9432"]},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210134313","display_name":"Biologie et gestion des champignons phytopathog\u00e8nes","ror":"https://ror.org/049q30t56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I4210088668","https://openalex.org/I4210134313"]},{"id":"https://openalex.org/I4387154544","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/01x3gbx83","country_code":"FR","type":"funder","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4387154544"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Isabelle Fudal","raw_affiliation_strings":["Institut National de la Recherche Agronomique (INRA), Research Unit 1290 BIOGER, F-78850 Thiverval-Grignon, France, and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut National de la Recherche Agronomique (INRA), Research Unit 1290 BIOGER, F-78850 Thiverval-Grignon, France, and","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210134313","https://openalex.org/I4387154544"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080841337","display_name":"Juliette Linglin","orcid":"https://orcid.org/0009-0007-5891-1316","observed_orcids":["https://orcid.org/0009-0007-5891-1316"]},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210134313","display_name":"Biologie et gestion des champignons phytopathog\u00e8nes","ror":"https://ror.org/049q30t56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I4210088668","https://openalex.org/I4210134313"]},{"id":"https://openalex.org/I4387154544","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/01x3gbx83","country_code":"FR","type":"funder","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4387154544"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Juliette Linglin","raw_affiliation_strings":["Institut National de la Recherche Agronomique (INRA), Research Unit 1290 BIOGER, F-78850 Thiverval-Grignon, France, and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut National de la Recherche Agronomique (INRA), Research Unit 1290 BIOGER, F-78850 Thiverval-Grignon, France, and","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210134313","https://openalex.org/I4387154544"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087086583","display_name":"B\u00e9n\u00e9dicte Ollivier","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210134313","display_name":"Biologie et gestion des champignons phytopathog\u00e8nes","ror":"https://ror.org/049q30t56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I4210088668","https://openalex.org/I4210134313"]},{"id":"https://openalex.org/I4387154544","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/01x3gbx83","country_code":"FR","type":"funder","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4387154544"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Benedicte Ollivier","raw_affiliation_strings":["Institut National de la Recherche Agronomique (INRA), Research Unit 1290 BIOGER, F-78850 Thiverval-Grignon, France, and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut National de la Recherche Agronomique (INRA), Research Unit 1290 BIOGER, F-78850 Thiverval-Grignon, France, and","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210134313","https://openalex.org/I4387154544"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109179710","display_name":"Fran\u00e7oise Blaise","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210134313","display_name":"Biologie et gestion des champignons phytopathog\u00e8nes","ror":"https://ror.org/049q30t56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I4210088668","https://openalex.org/I4210134313"]},{"id":"https://openalex.org/I4387154544","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/01x3gbx83","country_code":"FR","type":"funder","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4387154544"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fran\u00e7oise Blaise","raw_affiliation_strings":["Institut National de la Recherche Agronomique (INRA), Research Unit 1290 BIOGER, F-78850 Thiverval-Grignon, France, and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut National de la Recherche Agronomique (INRA), Research Unit 1290 BIOGER, F-78850 Thiverval-Grignon, France, and","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210134313","https://openalex.org/I4387154544"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013078077","display_name":"Marie\u2010H\u00e9l\u00e8ne Balesdent","orcid":"https://orcid.org/0000-0001-5523-9180","observed_orcids":["https://orcid.org/0000-0001-5523-9180"]},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210134313","display_name":"Biologie et gestion des champignons phytopathog\u00e8nes","ror":"https://ror.org/049q30t56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I4210088668","https://openalex.org/I4210134313"]},{"id":"https://openalex.org/I4387154544","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/01x3gbx83","country_code":"FR","type":"funder","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4387154544"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marie-H\u00e9l\u00e8ne Balesdent","raw_affiliation_strings":["Institut National de la Recherche Agronomique (INRA), Research Unit 1290 BIOGER, F-78850 Thiverval-Grignon, France, and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut National de la Recherche Agronomique (INRA), Research Unit 1290 BIOGER, F-78850 Thiverval-Grignon, France, and","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210134313","https://openalex.org/I4387154544"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012907964","display_name":"Thierry Rouxel","orcid":"https://orcid.org/0000-0001-9563-1793","observed_orcids":["https://orcid.org/0000-0001-9563-1793"]},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210134313","display_name":"Biologie et gestion des champignons phytopathog\u00e8nes","ror":"https://ror.org/049q30t56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I4210088668","https://openalex.org/I4210134313"]},{"id":"https://openalex.org/I4387154544","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/01x3gbx83","country_code":"FR","type":"funder","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4387154544"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Thierry Rouxel","raw_affiliation_strings":["Institut National de la Recherche Agronomique (INRA), Research Unit 1290 BIOGER, F-78850 Thiverval-Grignon, France, and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut National de la Recherche Agronomique (INRA), Research Unit 1290 BIOGER, F-78850 Thiverval-Grignon, France, and","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210134313","https://openalex.org/I4387154544"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5012907964"],"corresponding_institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210134313","https://openalex.org/I4387154544"],"apc_list":{"value":2709,"currency":"USD","value_usd":2709},"apc_paid":{"value":2709,"currency":"USD","value_usd":2709},"fwci":0.7349,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.65062369,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":97},"biblio":{"volume":"2","issue":"8","first_page":"891","last_page":"904"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.6532999873161316,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.6532999873161316,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12828","display_name":"Plant Genetic and Mutation Studies","score":0.17309999465942383,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.0502999983727932,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/leptosphaeria-maculans","display_name":"Leptosphaeria maculans","score":0.9480000138282776},{"id":"https://openalex.org/keywords/t-dna-integration","display_name":"T-DNA integration","score":0.9860000014305115},{"id":"https://openalex.org/keywords/agrobacterium-mediated-transformation","display_name":"Agrobacterium-mediated transformation","score":0.9769999980926514},{"id":"https://openalex.org/keywords/transposable-elements","display_name":"transposable elements","score":0.6620000004768372},{"id":"https://openalex.org/keywords/microhomology","display_name":"microhomology","score":0.753000020980835},{"id":"https://openalex.org/keywords/homologous-recombination","display_name":"homologous recombination","score":0.8799999952316284},{"id":"https://openalex.org/keywords/microhomology-mediated-end-joining","display_name":"microhomology-mediated end joining","score":0.9810000061988831},{"id":"https://openalex.org/keywords/promoter-targeting","display_name":"promoter targeting","score":0.7590000033378601},{"id":"https://openalex.org/keywords/genome-annotation","display_name":"genome annotation","score":0.36899998784065247},{"id":"https://openalex.org/keywords/pathogenicity-determinants","display_name":"pathogenicity determinants","score":0.7400000095367432}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.845617413520813},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6821783185005188},{"id":"https://openalex.org/C2779297677","wikidata":"https://www.wikidata.org/wiki/Q6528396","display_name":"Leptosphaeria maculans","level":3,"score":0.6753082871437073},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6005130410194397},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5642103552818298},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4651516377925873},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.41203704476356506}],"mesh":[{"descriptor_ui":"D001203","descriptor_name":"Ascomycota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1534/g3.112.002048","doi":"https://doi.org/10.1534/g3.112.002048","is_oa":true,"landing_page_url":"https://doi.org/10.1534/g3.112.002048","pdf_url":"https://academic.oup.com/g3journal/article-pdf/2/8/891/37069714/g3journal0891.pdf","source":{"id":"https://openalex.org/S109822313","display_name":"G3 Genes Genomes Genetics","issn_l":"2160-1836","issn":["2160-1836"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310319844","host_organization_name":"Genetics Society of America","host_organization_lineage":["https://openalex.org/P4310319844"],"host_organization_lineage_names":["Genetics Society of America"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"G3 Genes|Genomes|Genetics","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2424635","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3411245","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3411245","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3411245","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"G3 (Bethesda)","raw_type":"Text"},{"id":"pmid:22908038","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22908038","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"G3 (Bethesda, Md.)","raw_type":"Journal Article"},{"id":"pmh:oai:www.zora.uzh.ch:75758","doi":null,"is_oa":true,"landing_page_url":"https://www.zora.uzh.ch/id/eprint/75758/1/bourras.pdf","pdf_url":"https://www.zora.uzh.ch/id/eprint/75758/1/bourras.pdf","source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Bourras, S; Meyer, M; Grandaubert, J; Lapalu, N; Fudal, I; Linglin, J; Ollivier, B; Blaise, F; Balesdent, M-H; Rouxel, T (2012). Incidence of Genome Structure, DNA Asymmetry, and Cell Physiology on T-DNA Integration in Chromosomes of the Phytopathogenic Fungus Leptosphaeria maculans. G3 : Genes, Genomes, Genetics, 2(8):891-904.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-01000638v1","doi":null,"is_oa":true,"landing_page_url":"https://hal.science/hal-01000638/document","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4405252976","host_organization_name":"Centre pour la Communication Scientifique Directe","host_organization_lineage":["https://openalex.org/I4405252976"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"G3, 2012, 2 (8), pp.891-904. &#x27E8;10.1534/g3.112.002048&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:www.zora.uzh.ch:20.500.14742/90171","doi":null,"is_oa":true,"landing_page_url":"https://www.zora.uzh.ch/handle/20.500.14742/90171","pdf_url":null,"source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bourras, S., Meyer, M., Grandaubert, J., Lapalu, N., Fudal, I., Linglin, J., Ollivier, B., Blaise, F., Balesdent, M.-H., & Rouxel, T. (2012). Incidence of Genome Structure, DNA Asymmetry, and Cell Physiology on T-DNA Integration in Chromosomes of the Phytopathogenic Fungus Leptosphaeria maculans. G3\u202f: Genes, Genomes, Genetics, 2, 891\u2013904. https://doi.org/10.1534/g3.112.002048","raw_type":"Journal Article"},{"id":"doi:10.5167/uzh-75758","doi":"https://doi.org/10.5167/uzh-75758","is_oa":true,"landing_page_url":"https://doi.org/10.5167/uzh-75758","pdf_url":null,"source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.1534/g3.112.002048","doi":"https://doi.org/10.1534/g3.112.002048","is_oa":true,"landing_page_url":"https://doi.org/10.1534/g3.112.002048","pdf_url":"https://academic.oup.com/g3journal/article-pdf/2/8/891/37069714/g3journal0891.pdf","source":{"id":"https://openalex.org/S109822313","display_name":"G3 Genes Genomes Genetics","issn_l":"2160-1836","issn":["2160-1836"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310319844","host_organization_name":"Genetics Society of America","host_organization_lineage":["https://openalex.org/P4310319844"],"host_organization_lineage_names":["Genetics Society of America"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"G3 Genes|Genomes|Genetics","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2017759529.pdf","grobid_xml":"https://content.openalex.org/works/W2017759529.grobid-xml"},"referenced_works_count":71,"referenced_works":["https://openalex.org/W326971003","https://openalex.org/W1494075612","https://openalex.org/W1499400826","https://openalex.org/W1840978491","https://openalex.org/W1965267489","https://openalex.org/W1969600436","https://openalex.org/W1973646952","https://openalex.org/W1974116356","https://openalex.org/W1976059977","https://openalex.org/W1978239142","https://openalex.org/W1980602152","https://openalex.org/W1982465572","https://openalex.org/W1985111078","https://openalex.org/W1987332588","https://openalex.org/W1988306770","https://openalex.org/W1994416524","https://openalex.org/W1996936761","https://openalex.org/W1999966058","https://openalex.org/W2003455667","https://openalex.org/W2005536357","https://openalex.org/W2009826663","https://openalex.org/W2011239998","https://openalex.org/W2023805910","https://openalex.org/W2030932054","https://openalex.org/W2031784295","https://openalex.org/W2036652624","https://openalex.org/W2052602128","https://openalex.org/W2059258195","https://openalex.org/W2060767532","https://openalex.org/W2061646041","https://openalex.org/W2064911222","https://openalex.org/W2066889359","https://openalex.org/W2068119185","https://openalex.org/W2071845873","https://openalex.org/W2075460042","https://openalex.org/W2088052450","https://openalex.org/W2090293826","https://openalex.org/W2091414528","https://openalex.org/W2092855609","https://openalex.org/W2096479004","https://openalex.org/W2098115340","https://openalex.org/W2098447141","https://openalex.org/W2098526502","https://openalex.org/W2100882223","https://openalex.org/W2103755831","https://openalex.org/W2104719224","https://openalex.org/W2105054943","https://openalex.org/W2113634873","https://openalex.org/W2118468800","https://openalex.org/W2120033506","https://openalex.org/W2120886934","https://openalex.org/W2128535352","https://openalex.org/W2132920733","https://openalex.org/W2134153749","https://openalex.org/W2137357070","https://openalex.org/W2137714421","https://openalex.org/W2139624975","https://openalex.org/W2140786447","https://openalex.org/W2140948740","https://openalex.org/W2153283265","https://openalex.org/W2157358322","https://openalex.org/W2161479301","https://openalex.org/W2162128231","https://openalex.org/W2162759662","https://openalex.org/W2163129487","https://openalex.org/W2163776751","https://openalex.org/W2164261080","https://openalex.org/W2169805130","https://openalex.org/W2170698318","https://openalex.org/W2171468101","https://openalex.org/W7098017469"],"related_works":["https://openalex.org/W2139624975","https://openalex.org/W2003005341","https://openalex.org/W7143318315","https://openalex.org/W3033174299","https://openalex.org/W4296568218","https://openalex.org/W2075460042","https://openalex.org/W2042899053","https://openalex.org/W2141158189","https://openalex.org/W4281934502","https://openalex.org/W178704404"],"abstract_inverted_index":{"The":[0,158,212],"ever-increasing":[1],"generation":[2],"of":[3,18,27,38,45,47,78,87,97,109,125,134,148,177,200,214],"sequence":[4,224],"data":[5],"is":[6,64],"accompanied":[7],"by":[8,235],"unsatisfactory":[9],"functional":[10,36],"annotation,":[11],"and":[12,20,57,115,121,132,142,167,189,219],"complex":[13],"genomes,":[14],"such":[15],"as":[16],"those":[17],"plants":[19],"filamentous":[21],"fungi,":[22],"show":[23],"a":[24,178],"large":[25],"number":[26],"genes":[28,150],"with":[29,55,173,193,204,228],"no":[30],"predicted":[31],"or":[32,40],"known":[33],"function.":[34],"For":[35],"annotation":[37,147],"unknown":[39],"hypothetical":[41],"genes,":[42],"the":[43,88,95,129,137,143,154,174,194,198,208,220,240],"production":[44],"collections":[46],"mutants":[48],"using":[49,153],"Agrobacterium":[50],"tumefaciens-mediated":[51],"transformation":[52],"(ATMT)":[53],"associated":[54],"genotyping":[56],"phenotyping":[58],"has":[59],"gained":[60],"wide":[61],"acceptance.":[62],"ATMT":[63],"also":[65,226],"widely":[66],"used":[67],"to":[68,93,231],"identify":[69],"pathogenicity":[70],"determinants":[71],"in":[72,83,100,119],"pathogenic":[73],"fungi.":[74],"A":[75,107],"systematic":[76],"analysis":[77],"T-DNA":[79,98,111,138,159,181,195,201,221,229],"borders":[80],"was":[81,151,183,225],"performed":[82],"an":[84],"ATMT-mutagenized":[85],"collection":[86],"phytopathogenic":[89],"fungus":[90],"Leptosphaeria":[91],"maculans":[92],"evaluate":[94],"features":[96],"integration":[99,160,182,230],"its":[101],"particular":[102],"transposable":[103],"element-rich":[104],"compartmentalized":[105],"genome.":[106],"total":[108],"318":[110],"tags":[112],"were":[113],"recovered":[114],"analyzed":[116],"for":[117],"biases":[118],"chromosome":[120],"genic":[122],"compartments,":[123],"existence":[124,213],"CG/AT":[126],"skews":[127],"at":[128],"insertion":[130,202],"site,":[131],"occurrence":[133],"microhomologies":[135,215],"between":[136,216],"left":[139],"border":[140],"(LB)":[141],"target":[144],"sequence.":[145],"Functional":[146],"targeted":[149,162],"done":[152],"Gene":[155],"Ontology":[156],"annotation.":[157],"mainly":[161,190],"gene-rich,":[163],"transcriptionally":[164],"active":[165],"regions,":[166,188],"it":[168],"favored":[169],"biological":[170],"processes":[171],"consistent":[172,227],"physiological":[175],"status":[176],"germinating":[179],"spore.":[180],"strongly":[184],"biased":[185],"toward":[186],"regulatory":[187],"promoters.":[191],"Consistent":[192],"intranuclear-targeting":[196],"model,":[197],"density":[199],"correlated":[203],"CG":[205],"skew":[206],"near":[207],"transcription":[209],"initiation":[210],"site.":[211],"promoter":[217],"sequences":[218],"LB":[222],"flanking":[223],"host":[232],"DNA":[233],"mediated":[234],"homologous":[236],"recombination":[237],"based":[238],"on":[239],"microhomology-mediated":[241],"end-joining":[242],"pathway.":[243]},"counts_by_year":[{"year":2022,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2016-06-24T00:00:00"}
