{"id":"https://openalex.org/W2016584600","doi":"https://doi.org/10.1111/j.1751-1097.1996.tb03106.x","title":"Structure\u2010Based Calculations of the Optical Spectra of the LH2 Bacteriochlorophyll\u2010Protein Complex from Rhodopseudomonas acidophila","display_name":"Structure\u2010Based Calculations of the Optical Spectra of the LH2 Bacteriochlorophyll\u2010Protein Complex from Rhodopseudomonas acidophila","publication_year":1996,"publication_date":"1996-09-01","ids":{"openalex":"https://openalex.org/W2016584600","doi":"https://doi.org/10.1111/j.1751-1097.1996.tb03106.x","mag":"2016584600"},"language":"en","primary_location":{"id":"doi:10.1111/j.1751-1097.1996.tb03106.x","doi":"https://doi.org/10.1111/j.1751-1097.1996.tb03106.x","is_oa":false,"landing_page_url":"https://doi.org/10.1111/j.1751-1097.1996.tb03106.x","pdf_url":null,"source":{"id":"https://openalex.org/S61245073","display_name":"Photochemistry and Photobiology","issn_l":"0031-8655","issn":["0031-8655","1751-1097"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Photochemistry and Photobiology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109129594","display_name":"Kenneth Sauer","orcid":"https://orcid.org/0000-0003-3257-0916","observed_orcids":["https://orcid.org/0000-0003-3257-0916"]},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kenneth Sauer","raw_affiliation_strings":["Department of Chemistry and Structural Biology Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Structural Biology Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, CA, USA","institution_ids":["https://openalex.org/I148283060","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065747850","display_name":"Richard John Cogdell","orcid":"https://orcid.org/0000-0003-2119-6607","observed_orcids":["https://orcid.org/0000-0003-2119-6607"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Richard J. Cogdell","raw_affiliation_strings":["Division of Biochemistry and Molecular Biology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biochemistry and Molecular Biology","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044465276","display_name":"Stephen M. Prince","orcid":"https://orcid.org/0000-0003-0929-0254","observed_orcids":["https://orcid.org/0000-0003-0929-0254"]},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Steve M. Prince","raw_affiliation_strings":["Department of Chemistry, University of Glasgow, Glasgow, UK","Dept. of Chemistry, University of Glasgow, Glasgow, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, University of Glasgow, Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"Dept. of Chemistry, University of Glasgow, Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109106491","display_name":"Andy A. Freer","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andy Freer","raw_affiliation_strings":["Department of Chemistry, University of Glasgow, Glasgow, UK","Dept. of Chemistry, University of Glasgow, Glasgow, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, University of Glasgow, Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"Dept. of Chemistry, University of Glasgow, Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111812385","display_name":"Neil W. Isaacs","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Neil W. Isaacs","raw_affiliation_strings":["Department of Chemistry, University of Glasgow, Glasgow, UK","Dept. of Chemistry, University of Glasgow, Glasgow, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, University of Glasgow, Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"Dept. of Chemistry, University of Glasgow, Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058739189","display_name":"Hugo Scheer","orcid":"https://orcid.org/0000-0001-8239-7133","observed_orcids":["https://orcid.org/0000-0001-8239-7133"]},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hugo Scheer","raw_affiliation_strings":["Botanisches Institut, Universita\u0308t Mu\u0308nchen, Miinchen, Germany","Botanisches Institut, Universit\u00e4t M\u00fcnchen, Miinchen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Botanisches Institut, Universita\u0308t Mu\u0308nchen, Miinchen, Germany","institution_ids":["https://openalex.org/I8204097"]},{"raw_affiliation_string":"Botanisches Institut, Universit\u00e4t M\u00fcnchen, Miinchen, Germany","institution_ids":["https://openalex.org/I8204097"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5109129594"],"corresponding_institution_ids":["https://openalex.org/I148283060","https://openalex.org/I95457486"],"apc_list":{"value":4330,"currency":"USD","value_usd":4330},"apc_paid":null,"fwci":19.4492,"has_fulltext":false,"cited_by_count":296,"citation_normalized_percentile":{"value":0.99788021,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":99},"biblio":{"volume":"64","issue":"3","first_page":"564","last_page":"576"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11177","display_name":"Spectroscopy and Quantum Chemical Studies","score":0.885699987411499,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11177","display_name":"Spectroscopy and Quantum Chemical Studies","score":0.885699987411499,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.049300000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10903","display_name":"Porphyrin and Phthalocyanine Chemistry","score":0.02500000037252903,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lh2-complex","display_name":"LH2 complex","score":0.7369999885559082},{"id":"https://openalex.org/keywords/rhodopseudomonas-acidophila","display_name":"Rhodopseudomonas acidophila","score":0.9909999966621399},{"id":"https://openalex.org/keywords/excitonic-coupling","display_name":"excitonic coupling","score":0.8389999866485596},{"id":"https://openalex.org/keywords/near-infrared-absorption","display_name":"near-infrared absorption","score":0.7379999756813049},{"id":"https://openalex.org/keywords/circular-dichroism","display_name":"circular dichroism","score":0.9459999799728394},{"id":"https://openalex.org/keywords/polarization","display_name":"polarization","score":0.7789999842643738},{"id":"https://openalex.org/keywords/point-charge-model","display_name":"point charge model","score":0.5370000004768372},{"id":"https://openalex.org/keywords/site-energy","display_name":"site energy","score":0.6119999885559082},{"id":"https://openalex.org/keywords/photosynthetic-antenna","display_name":"photosynthetic antenna","score":0.48399999737739563}],"concepts":[{"id":"https://openalex.org/C2780784151","wikidata":"https://www.wikidata.org/wiki/Q1992180","display_name":"Bacteriochlorophyll","level":3,"score":0.7528526782989502},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.6517419815063477},{"id":"https://openalex.org/C2779162199","wikidata":"https://www.wikidata.org/wiki/Q1335274","display_name":"Purple bacteria","level":4,"score":0.5978979468345642},{"id":"https://openalex.org/C192468462","wikidata":"https://www.wikidata.org/wiki/Q533543","display_name":"Chromophore","level":2,"score":0.518927812576294},{"id":"https://openalex.org/C41999313","wikidata":"https://www.wikidata.org/wiki/Q489328","display_name":"Molecular physics","level":1,"score":0.47234976291656494},{"id":"https://openalex.org/C198990423","wikidata":"https://www.wikidata.org/wiki/Q331882","display_name":"Transition dipole moment","level":3,"score":0.4324479401111603},{"id":"https://openalex.org/C188231169","wikidata":"https://www.wikidata.org/wiki/Q418676","display_name":"Photosynthetic reaction centre","level":3,"score":0.35079944133758545},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.24487066268920898},{"id":"https://openalex.org/C75473681","wikidata":"https://www.wikidata.org/wiki/Q188651","display_name":"Photochemistry","level":1,"score":0.17578235268592834},{"id":"https://openalex.org/C183688256","wikidata":"https://www.wikidata.org/wiki/Q11982","display_name":"Photosynthesis","level":2,"score":0.06745252013206482},{"id":"https://openalex.org/C123669783","wikidata":"https://www.wikidata.org/wiki/Q902898","display_name":"Electron transfer","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1111/j.1751-1097.1996.tb03106.x","doi":"https://doi.org/10.1111/j.1751-1097.1996.tb03106.x","is_oa":false,"landing_page_url":"https://doi.org/10.1111/j.1751-1097.1996.tb03106.x","pdf_url":null,"source":{"id":"https://openalex.org/S61245073","display_name":"Photochemistry and Photobiology","issn_l":"0031-8655","issn":["0031-8655","1751-1097"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Photochemistry and Photobiology","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W126001814","https://openalex.org/W1532634227","https://openalex.org/W1845549877","https://openalex.org/W1848660617","https://openalex.org/W1974353251","https://openalex.org/W1977183594","https://openalex.org/W1978855371","https://openalex.org/W1989107097","https://openalex.org/W1990764731","https://openalex.org/W1996027529","https://openalex.org/W2004419769","https://openalex.org/W2011060480","https://openalex.org/W2012334254","https://openalex.org/W2013433046","https://openalex.org/W2017627877","https://openalex.org/W2017665393","https://openalex.org/W2020354534","https://openalex.org/W2023813727","https://openalex.org/W2026747734","https://openalex.org/W2028231353","https://openalex.org/W2043380999","https://openalex.org/W2044321989","https://openalex.org/W2045664105","https://openalex.org/W2057622624","https://openalex.org/W2063964945","https://openalex.org/W2075097667","https://openalex.org/W2085710620","https://openalex.org/W2089867307","https://openalex.org/W2094857761","https://openalex.org/W2105407693","https://openalex.org/W2165402928","https://openalex.org/W2169791789","https://openalex.org/W2343891719","https://openalex.org/W2963020067"],"related_works":["https://openalex.org/W1993914107","https://openalex.org/W7101243968","https://openalex.org/W1986485730","https://openalex.org/W202834211","https://openalex.org/W2025018033","https://openalex.org/W2060828076","https://openalex.org/W2143075141","https://openalex.org/W1000179827","https://openalex.org/W2541132050","https://openalex.org/W7096782285"],"abstract_inverted_index":{"Abstract\u2014":[0],"The":[1,66],"molecular":[2],"structure":[3],"of":[4,28,41,49,68,74,77,95,103,127,136,148,165,182,211,226],"the":[5,14,24,29,35,42,52,61,69,72,75,90,104,109,118,133,137,162,166,180,197,208,227,244],"light\u2010harvesting":[6],"complex":[7,12],"2":[8],"(LH2)":[9],"bacteriochlorophyll\u2010protein":[10],"antenna":[11],"from":[13,243],"purple":[15],"non\u2010sulfur":[16],"photosynthetic":[17],"bacterium":[18],"Rhodopseudomonas":[19],"acidophila,":[20],"strain":[21],"10050":[22],"provides":[23],"positions":[25],"and":[26,89,139,157,236],"orientations":[27],"27":[30],"bacteriochlorophyll":[31],"(BChl)":[32],"molecules":[33],"in":[34,51,108,122,169,216,233],"complex.":[36,130],"Our":[37],"structure\u2010based":[38],"model":[39],"calculations":[40,70,245],"distinctive":[43],"optical":[44],"properties":[45],"(absorption,":[46],"CD,":[47],"polarization)":[48],"LH2":[50],"near\u2010infrared":[53],"region":[54],"use":[55],"a":[56,143],"point\u2010monopole":[57],"approximation":[58],"to":[59,82,100,114,117],"represent":[60],"BChl":[62,81,99,168],"Qy":[63,163],"transition":[64],"moment.":[65],"results":[67],"support":[71],"assignment":[73],"ring":[76,94],"18":[78,212],"closely":[79],"coupled":[80,98],"B850":[83,140,183,213],"(BChl":[84],"absorbing":[85],"at":[86,201],"850":[87],"nm)":[88],"larger":[91],"diameter,":[92],"parallel":[93],"9":[96],"weakly":[97],"B800.":[101],"All":[102],"significantly":[105],"allowed":[106],"transitions":[107,164],"near":[110],"infrared":[111],"are":[112],"calculated":[113],"be":[115],"perpendicular":[116],"C9":[119],"symmetry":[120],"axis,":[121],"agreement":[123],"with":[124,185,196],"polarization":[125],"studies":[126],"this":[128],"membrane\u2010associated":[129],"To":[131],"match":[132],"absorption":[134,199,235],"maxima":[135],"B800":[138],"components":[141],"using":[142],"relative":[144],"permittivity":[145],"(dielectric":[146],"constant)":[147],"2.1,":[149],"we":[150],"assign":[151],"different":[152],"site":[153],"energies":[154,188],"(12":[155],"500":[156],"12260":[158],"cm\u22121,":[159],"respectively)":[160],"for":[161,207],"respective":[167],"their":[170],"protein":[171],"binding":[172],"sites.":[173],"Excitonic":[174],"coupling":[175],"is":[176,221],"particularly":[177],"strong":[178,205],"among":[179],"set":[181,210],"chromophores,":[184,214],"pairwise":[186],"interaction":[187],"nearly":[189],"300":[190],"cm":[191],"between":[192],"nearest":[193],"neighbors,":[194],"comparable":[195],"experimental":[198,247],"bandwidths":[200],"room":[202],"temperature.":[203],"These":[204,241],"interactions,":[206],"full":[209],"result":[215,232],"an":[217],"excitonic":[218,229],"manifold":[219],"that":[220],"1200":[222],"cm\u22121":[223],"wide.":[224],"Some":[225],"upper":[228],"states":[230],"should":[231],"weak":[234],"perhaps":[237],"stronger":[238],"CD":[239],"features.":[240],"predictions":[242],"await":[246],"verification.":[248]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":1}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2016-06-24T00:00:00"}
