{"id":"https://openalex.org/W2016508587","doi":"https://doi.org/10.1101/gr.3873705","title":"ATG deserts define a novel core promoter subclass","display_name":"ATG deserts define a novel core promoter subclass","publication_year":2005,"publication_date":"2005-08-18","ids":{"openalex":"https://openalex.org/W2016508587","doi":"https://doi.org/10.1101/gr.3873705","mag":"2016508587","pmid":"https://pubmed.ncbi.nlm.nih.gov/16109972"},"language":"en","primary_location":{"id":"doi:10.1101/gr.3873705","doi":"https://doi.org/10.1101/gr.3873705","is_oa":true,"landing_page_url":"https://doi.org/10.1101/gr.3873705","pdf_url":"https://genome.cshlp.org/content/15/9/1189.full.pdf","source":{"id":"https://openalex.org/S43092948","display_name":"Genome Research","issn_l":"1088-9051","issn":["1088-9051","1549-5469"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","doyens","jufo-3","ki-jl-2","medline","norway-2","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310315909","host_organization_name":"Cold Spring Harbor Laboratory Press","host_organization_lineage":["https://openalex.org/P4310315909"],"host_organization_lineage_names":["Cold Spring Harbor Laboratory Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Research","raw_type":"journal-article"},"volume":null,"type":"preprint","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://genome.cshlp.org/content/15/9/1189.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055646675","display_name":"Maxwell P. Lee","orcid":"https://orcid.org/0000-0003-3738-1292","observed_orcids":["https://orcid.org/0000-0003-3738-1292"]},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maxwell P. Lee","raw_affiliation_strings":["Laboratory of Population Genetics, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Population Genetics, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892, USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210140884"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057082791","display_name":"T. Kevin Howcroft","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kevin Howcroft","raw_affiliation_strings":["Division of Cancer Biology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Cancer Biology","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037990331","display_name":"Aparna Kotekar","orcid":"https://orcid.org/0000-0001-6884-2210","observed_orcids":["https://orcid.org/0000-0001-6884-2210"]},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aparna Kotekar","raw_affiliation_strings":["Experimental Immunology Branch and","National Institutes of Health"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Experimental Immunology Branch and","institution_ids":[]},{"raw_affiliation_string":"National Institutes of Health","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008522290","display_name":"Howard Hua Yang","orcid":"https://orcid.org/0000-0002-9291-631X","observed_orcids":["https://orcid.org/0000-0002-9291-631X"]},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Howard H. Yang","raw_affiliation_strings":["Laboratory of Population Genetics , National Cancer Institute , National Institutes of Health , Bethesda , Maryland 20892 , USA","National Institutes of Health"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Population Genetics , National Cancer Institute , National Institutes of Health , Bethesda , Maryland 20892 , USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210140884"]},{"raw_affiliation_string":"National Institutes of Health","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014704347","display_name":"Kenneth H. Buetow","orcid":"https://orcid.org/0000-0003-4439-0939","observed_orcids":["https://orcid.org/0000-0003-4439-0939"]},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kenneth H. Buetow","raw_affiliation_strings":["Laboratory of Population Genetics , National Cancer Institute , National Institutes of Health , Bethesda , Maryland 20892 , USA","National Institutes of Health"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Population Genetics , National Cancer Institute , National Institutes of Health , Bethesda , Maryland 20892 , USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210140884"]},{"raw_affiliation_string":"National Institutes of Health","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060151324","display_name":"Dinah S. Singer","orcid":"https://orcid.org/0000-0002-7369-3018","observed_orcids":["https://orcid.org/0000-0002-7369-3018"]},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dinah S. Singer","raw_affiliation_strings":["Experimental Immunology Branch and","National Institutes of Health"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Experimental Immunology Branch and","institution_ids":[]},{"raw_affiliation_string":"National Institutes of Health","institution_ids":["https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":30,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"15","issue":"9","first_page":"1189","last_page":"1197"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12820","display_name":"Chromatin Remodeling and Cancer","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/core-promoter","display_name":"core promoter","score":0.8960000276565552},{"id":"https://openalex.org/keywords/pd-1","display_name":"PD-1","score":0.8230000138282776},{"id":"https://openalex.org/keywords/mhc-class-i-genes","display_name":"MHC class I genes","score":0.7929999828338623},{"id":"https://openalex.org/keywords/transcription-start-site-selection","display_name":"transcription start site selection","score":0.8529999852180481},{"id":"https://openalex.org/keywords/cpg-islands","display_name":"CpG islands","score":0.8500000238418579}],"concepts":[{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.8235609531402588},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8032208681106567},{"id":"https://openalex.org/C140173407","wikidata":"https://www.wikidata.org/wiki/Q1138358","display_name":"CpG site","level":5,"score":0.6321171522140503},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6017240285873413},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.598736584186554},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5842341184616089},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.5813553333282471},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.497299462556839},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46169742941856384},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.46084901690483093},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4307917356491089},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.4211258590221405},{"id":"https://openalex.org/C21592294","wikidata":"https://www.wikidata.org/wiki/Q3238407","display_name":"Regulatory sequence","level":4,"score":0.4169695973396301},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.4137958884239197},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.18196231126785278},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.15364500880241394},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005805","descriptor_name":"Genes, MHC Class I","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005805","descriptor_name":"Genes, MHC Class I","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005805","descriptor_name":"Genes, MHC Class I","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006367","descriptor_name":"HeLa Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006367","descriptor_name":"HeLa Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006367","descriptor_name":"HeLa Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009838","descriptor_name":"Oligodeoxyribonucleotides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009838","descriptor_name":"Oligodeoxyribonucleotides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009838","descriptor_name":"Oligodeoxyribonucleotides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013552","descriptor_name":"Swine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013552","descriptor_name":"Swine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013552","descriptor_name":"Swine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1101/gr.3873705","doi":"https://doi.org/10.1101/gr.3873705","is_oa":true,"landing_page_url":"https://doi.org/10.1101/gr.3873705","pdf_url":"https://genome.cshlp.org/content/15/9/1189.full.pdf","source":{"id":"https://openalex.org/S43092948","display_name":"Genome Research","issn_l":"1088-9051","issn":["1088-9051","1549-5469"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","doyens","jufo-3","ki-jl-2","medline","norway-2","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310315909","host_organization_name":"Cold Spring Harbor Laboratory Press","host_organization_lineage":["https://openalex.org/P4310315909"],"host_organization_lineage_names":["Cold Spring Harbor Laboratory Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Research","raw_type":"journal-article"},{"id":"pmid:16109972","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16109972","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome research","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:1080584","doi":null,"is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1199533","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1199533","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1199533","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Genome Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1101/gr.3873705","doi":"https://doi.org/10.1101/gr.3873705","is_oa":true,"landing_page_url":"https://doi.org/10.1101/gr.3873705","pdf_url":"https://genome.cshlp.org/content/15/9/1189.full.pdf","source":{"id":"https://openalex.org/S43092948","display_name":"Genome Research","issn_l":"1088-9051","issn":["1088-9051","1549-5469"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","doyens","jufo-3","ki-jl-2","medline","norway-2","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310315909","host_organization_name":"Cold Spring Harbor Laboratory Press","host_organization_lineage":["https://openalex.org/P4310315909"],"host_organization_lineage_names":["Cold Spring Harbor Laboratory Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Research","raw_type":"journal-article"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[{"id":"https://metadata.un.org/sdg/14","score":0.8500000238418579,"display_name":"Life below water"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2016508587.pdf","grobid_xml":"https://content.openalex.org/works/W2016508587.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W47789525","https://openalex.org/W159473923","https://openalex.org/W201728055","https://openalex.org/W1417369482","https://openalex.org/W1605738254","https://openalex.org/W1623067816","https://openalex.org/W1634746048","https://openalex.org/W1816380050","https://openalex.org/W1852931409","https://openalex.org/W1968154034","https://openalex.org/W1975031001","https://openalex.org/W1998364073","https://openalex.org/W1998671864","https://openalex.org/W1999137852","https://openalex.org/W1999138582","https://openalex.org/W1999510229","https://openalex.org/W2000161170","https://openalex.org/W2006322387","https://openalex.org/W2016786878","https://openalex.org/W2017243155","https://openalex.org/W2020830418","https://openalex.org/W2031738197","https://openalex.org/W2037486567","https://openalex.org/W2040149948","https://openalex.org/W2045348184","https://openalex.org/W2050249780","https://openalex.org/W2054244366","https://openalex.org/W2062219202","https://openalex.org/W2065014938","https://openalex.org/W2070280762","https://openalex.org/W2074351361","https://openalex.org/W2079124813","https://openalex.org/W2079524506","https://openalex.org/W2081105258","https://openalex.org/W2083479872","https://openalex.org/W2084118479","https://openalex.org/W2084748297","https://openalex.org/W2092136133","https://openalex.org/W2094604037","https://openalex.org/W2096567462","https://openalex.org/W2097920884","https://openalex.org/W2098061126","https://openalex.org/W2101079676","https://openalex.org/W2101633713","https://openalex.org/W2107106791","https://openalex.org/W2117262917","https://openalex.org/W2124220434","https://openalex.org/W2129029591","https://openalex.org/W2134109217","https://openalex.org/W2135215848","https://openalex.org/W2142366629","https://openalex.org/W2142369777","https://openalex.org/W2148462952","https://openalex.org/W2148580359","https://openalex.org/W2150016122","https://openalex.org/W2153432157","https://openalex.org/W2154854793","https://openalex.org/W2157379699","https://openalex.org/W2163554913","https://openalex.org/W2326452144","https://openalex.org/W4213167074","https://openalex.org/W4242866406","https://openalex.org/W4246704556","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2078757082","https://openalex.org/W2033655940","https://openalex.org/W2006528877","https://openalex.org/W2763663556","https://openalex.org/W2146517458","https://openalex.org/W2362561464","https://openalex.org/W3211199720","https://openalex.org/W2889605195","https://openalex.org/W2127851640","https://openalex.org/W2972782405"],"abstract_inverted_index":{"The":[0],"MHC":[1],"class":[2],"I":[3],"gene,":[4],"PD1,":[5],"has":[6],"neither":[7],"functional":[8],"TATAA":[9],"nor":[10],"Initiator":[11],"(Inr)":[12],"elements":[13],"in":[14,29],"its":[15],"core":[16,36,102,154],"promoter":[17,37,103,123,155],"and":[18,58,62],"initiates":[19],"transcription":[20,42,45,96],"at":[21],"multiple,":[22],"dispersed":[23],"sites":[24],"over":[25],"an":[26,107],"extended":[27],"region":[28],"vitro.":[30],"Here,":[31],"we":[32,115],"define":[33,120],"a":[34,77,121,153,172],"novel":[35,122],"feature":[38],"that":[39,52,117,134,148],"supports":[40],"regulated":[41,57],"through":[43],"selective":[44],"start":[46,97],"site":[47],"(TSS)":[48],"usage.":[49],"We":[50,146],"demonstrate":[51],"TSS":[53,69,75,168],"selection":[54],"is":[55,104],"actively":[56],"context":[59],"dependent.":[60],"Basal":[61],"activated":[63],"transcriptions":[64],"initiate":[65],"from":[66,73],"largely":[67],"nonoverlapping":[68],"regions.":[70],"Transcripts":[71],"derived":[72],"multiple":[74,136,167],"encode":[76,171],"single":[78,173],"protein,":[79],"due":[80],"to":[81],"the":[82,94,100,140],"absence":[83],"of":[84,93,139,142],"any":[85],"ATG":[86,118,149],"triplets":[87],"within":[88,106],"approximately":[89],"430":[90],"bp":[91],"upstream":[92,160],"major":[95],"site.":[98],"Thus,":[99],"PD1":[101],"embedded":[105],"\"ATG":[108],"desert\".":[109],"Remarkably,":[110],"extending":[111],"this":[112],"analysis":[113],"genome-wide,":[114],"find":[116],"deserts":[119,150],"subclass.":[124],"They":[125],"occur":[126],"nonrandomly,":[127],"are":[128],"significantly":[129],"associated":[130],"with":[131],"non-TATAA":[132],"promoters":[133],"use":[135],"TSS,":[137],"independent":[138],"presence":[141],"CpG":[143],"islands":[144],"(CGI).":[145],"speculate":[147],"may":[151],"provide":[152],"platform":[156],"upon":[157],"which":[158],"complex":[159],"regulatory":[161],"signals":[162],"can":[163],"be":[164],"integrated,":[165],"targeting":[166],"whose":[169],"products":[170],"protein.":[174]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-10-14T16:39:01.820549","created_date":"2025-10-10T00:00:00"}
