{"id":"https://openalex.org/W2016239594","doi":"https://doi.org/10.1016/j.cimid.2009.09.005","title":"Phylogenetic analysis of recent classical swine fever virus (CSFV) isolates from Assam, India","display_name":"Phylogenetic analysis of recent classical swine fever virus (CSFV) isolates from Assam, India","publication_year":2009,"publication_date":"2009-11-08","ids":{"openalex":"https://openalex.org/W2016239594","doi":"https://doi.org/10.1016/j.cimid.2009.09.005","mag":"2016239594","pmid":"https://pubmed.ncbi.nlm.nih.gov/19896713"},"language":"en","primary_location":{"id":"doi:10.1016/j.cimid.2009.09.005","doi":"https://doi.org/10.1016/j.cimid.2009.09.005","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.cimid.2009.09.005","pdf_url":null,"source":{"id":"https://openalex.org/S55958362","display_name":"Comparative Immunology Microbiology and Infectious Diseases","issn_l":"0147-9571","issn":["0147-9571","1878-1667"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Comparative Immunology, Microbiology and Infectious Diseases","raw_type":"journal-article"},"parent_works":[],"lineage":["https://openalex.org/W2016239594"],"child_works_count":0,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108365389","display_name":"Dilip Kumar Sarma","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I35839044","display_name":"Assam Agricultural University","ror":"https://ror.org/05836pk12","country_code":"IN","type":"education","lineage":["https://openalex.org/I35839044"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Dilip Kumar Sarma","raw_affiliation_strings":["Assam Agricultural University, Khanapara, Guwahati, Assam, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Assam Agricultural University, Khanapara, Guwahati, Assam, India","institution_ids":["https://openalex.org/I35839044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066207602","display_name":"Niranjan Mishra","orcid":"https://orcid.org/0000-0001-7231-0583","observed_orcids":["https://orcid.org/0000-0001-7231-0583"]},"institutions":[{"id":"https://openalex.org/I185790649","display_name":"Indian Veterinary Research Institute","ror":"https://ror.org/02jcfzc36","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I185790649"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Niranjan Mishra","raw_affiliation_strings":["High Security Animal Disease Laboratory, Indian Veterinary Research Institute, Anand Nagar, Bhopal 462021, Madhya Pradesh, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"High Security Animal Disease Laboratory, Indian Veterinary Research Institute, Anand Nagar, Bhopal 462021, Madhya Pradesh, India","institution_ids":["https://openalex.org/I185790649"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001047578","display_name":"\u0160tefan Vil\u010dek","orcid":"https://orcid.org/0000-0002-4658-561X","observed_orcids":["https://orcid.org/0000-0002-4658-561X","https://orcid.org/0000-0001-6995-5452"]},"institutions":[{"id":"https://openalex.org/I3132579651","display_name":"University of Veterinary Medicine in Ko\u0161ice","ror":"https://ror.org/05btaka91","country_code":"SK","type":"education","lineage":["https://openalex.org/I3132579651"]}],"countries":["SK"],"is_corresponding":false,"raw_author_name":"Stefan Vilcek","raw_affiliation_strings":["Department of Infectious Diseases and Epizootiology, University of Veterinary Medicine, Komensky 73, Kosice, Slovak Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Infectious Diseases and Epizootiology, University of Veterinary Medicine, Komensky 73, Kosice, Slovak Republic","institution_ids":["https://openalex.org/I3132579651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065969108","display_name":"Katherukamem Rajukumar","orcid":"https://orcid.org/0000-0002-1828-1766","observed_orcids":["https://orcid.org/0000-0002-1828-1766"]},"institutions":[{"id":"https://openalex.org/I185790649","display_name":"Indian Veterinary Research Institute","ror":"https://ror.org/02jcfzc36","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I185790649"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Katherukamem Rajukumar","raw_affiliation_strings":["High Security Animal Disease Laboratory, Indian Veterinary Research Institute, Anand Nagar, Bhopal 462021, Madhya Pradesh, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"High Security Animal Disease Laboratory, Indian Veterinary Research Institute, Anand Nagar, Bhopal 462021, Madhya Pradesh, India","institution_ids":["https://openalex.org/I185790649"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057056066","display_name":"Sthita Pragnya Behera","orcid":"https://orcid.org/0000-0002-1517-5757","observed_orcids":["https://orcid.org/0000-0002-1517-5757"]},"institutions":[{"id":"https://openalex.org/I185790649","display_name":"Indian Veterinary Research Institute","ror":"https://ror.org/02jcfzc36","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I185790649"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sthita Pragnya Behera","raw_affiliation_strings":["High Security Animal Disease Laboratory, Indian Veterinary Research Institute, Anand Nagar, Bhopal 462021, Madhya Pradesh, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"High Security Animal Disease Laboratory, Indian Veterinary Research Institute, Anand Nagar, Bhopal 462021, Madhya Pradesh, India","institution_ids":["https://openalex.org/I185790649"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087177309","display_name":"Ram Kumar Nema","orcid":"https://orcid.org/0009-0003-9151-4874","observed_orcids":["https://orcid.org/0009-0003-9151-4874"]},"institutions":[{"id":"https://openalex.org/I185790649","display_name":"Indian Veterinary Research Institute","ror":"https://ror.org/02jcfzc36","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I185790649"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Ram Kumar Nema","raw_affiliation_strings":["High Security Animal Disease Laboratory, Indian Veterinary Research Institute, Anand Nagar, Bhopal 462021, Madhya Pradesh, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"High Security Animal Disease Laboratory, Indian Veterinary Research Institute, Anand Nagar, Bhopal 462021, Madhya Pradesh, India","institution_ids":["https://openalex.org/I185790649"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028186058","display_name":"Pooja Dubey","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I185790649","display_name":"Indian Veterinary Research Institute","ror":"https://ror.org/02jcfzc36","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I185790649"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Pooja Dubey","raw_affiliation_strings":["High Security Animal Disease Laboratory, Indian Veterinary Research Institute, Anand Nagar, Bhopal 462021, Madhya Pradesh, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"High Security Animal Disease Laboratory, Indian Veterinary Research Institute, Anand Nagar, Bhopal 462021, Madhya Pradesh, India","institution_ids":["https://openalex.org/I185790649"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103416924","display_name":"S. C. Dubey","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I185790649","display_name":"Indian Veterinary Research Institute","ror":"https://ror.org/02jcfzc36","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I185790649"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Shiv Chandra Dubey","raw_affiliation_strings":["High Security Animal Disease Laboratory, Indian Veterinary Research Institute, Anand Nagar, Bhopal 462021, Madhya Pradesh, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"High Security Animal Disease Laboratory, Indian Veterinary Research Institute, Anand Nagar, Bhopal 462021, Madhya Pradesh, India","institution_ids":["https://openalex.org/I185790649"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5066207602"],"corresponding_institution_ids":["https://openalex.org/I185790649"],"apc_list":{"value":3550,"currency":"USD","value_usd":3550},"apc_paid":null,"fwci":2.182,"has_fulltext":false,"cited_by_count":49,"citation_normalized_percentile":{"value":0.86135026,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":99},"biblio":{"volume":"34","issue":"1","first_page":"11","last_page":"15"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11560","display_name":"Animal Disease Management and Epidemiology","score":0.7445999979972839,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11560","display_name":"Animal Disease Management and Epidemiology","score":0.7445999979972839,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11495","display_name":"Animal Virus Infections Studies","score":0.23970000445842743,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12733","display_name":"Vector-Borne Animal Diseases","score":0.00419999985024333,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/classical-swine-fever-virus","display_name":"classical swine fever virus","score":0.9959999918937683},{"id":"https://openalex.org/keywords/phylogenetic-analysis","display_name":"phylogenetic analysis","score":0.8349999785423279},{"id":"https://openalex.org/keywords/genetic-typing","display_name":"genetic typing","score":0.7760000228881836},{"id":"https://openalex.org/keywords/5-untranslated-region","display_name":"5' untranslated region","score":0.746999979019165},{"id":"https://openalex.org/keywords/e2-gene","display_name":"E2 gene","score":0.9890000224113464},{"id":"https://openalex.org/keywords/ns5b-gene","display_name":"NS5B gene","score":0.9990000128746033},{"id":"https://openalex.org/keywords/swine-viral-infection","display_name":"swine viral disease","score":0.5070000290870667},{"id":"https://openalex.org/keywords/assam","display_name":"Assam","score":0.7540000081062317},{"id":"https://openalex.org/keywords/india","display_name":"India","score":0.4659999907016754},{"id":"https://openalex.org/keywords/genetic-variation","display_name":"genetic variation","score":0.6639999747276306},{"id":"https://openalex.org/keywords/disease-control","display_name":"disease control","score":0.4259999990463257}],"concepts":[{"id":"https://openalex.org/C2779005923","wikidata":"https://www.wikidata.org/wiki/Q683770","display_name":"Classical swine fever","level":3,"score":0.8241232633590698},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8078454732894897},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.775137722492218},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.7325761318206787},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.644271194934845},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.6202979683876038},{"id":"https://openalex.org/C2781209916","wikidata":"https://www.wikidata.org/wiki/Q3215756","display_name":"Typing","level":2,"score":0.5253281593322754},{"id":"https://openalex.org/C23085057","wikidata":"https://www.wikidata.org/wiki/Q5532877","display_name":"Genetic analysis","level":3,"score":0.5219387412071228},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.4899117350578308},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.4770980477333069},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.32760024070739746},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.32270899415016174}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006691","descriptor_name":"Classical Swine Fever","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D006691","descriptor_name":"Classical Swine Fever","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":true},{"descriptor_ui":"D006692","descriptor_name":"Classical Swine Fever Virus","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D006692","descriptor_name":"Classical Swine Fever Virus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006692","descriptor_name":"Classical Swine Fever Virus","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D007194","descriptor_name":"India","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013552","descriptor_name":"Swine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017720","descriptor_name":"Molecular Epidemiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058889","descriptor_name":"Molecular Typing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.cimid.2009.09.005","doi":"https://doi.org/10.1016/j.cimid.2009.09.005","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.cimid.2009.09.005","pdf_url":null,"source":{"id":"https://openalex.org/S55958362","display_name":"Comparative Immunology Microbiology and Infectious Diseases","issn_l":"0147-9571","issn":["0147-9571","1878-1667"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Comparative Immunology, Microbiology and Infectious Diseases","raw_type":"journal-article"},{"id":"pmid:19896713","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19896713","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Comparative immunology, microbiology and infectious diseases","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320717","display_name":"Department of Biotechnology, Ministry of Science and Technology, India","ror":"https://ror.org/03tjsyq23"},{"id":"https://openalex.org/F4320323251","display_name":"Agent\u00fara na Podporu V\u00fdskumu a V\u00fdvoja","ror":"https://ror.org/037nx0e70"},{"id":"https://openalex.org/F4320323641","display_name":"Vedeck\u00e1 Grantov\u00e1 Agent\u00fara M\u0160VVa\u0160 SR a SAV","ror":"https://ror.org/044gwpv05"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1524967393","https://openalex.org/W1572512161","https://openalex.org/W1971291037","https://openalex.org/W1971559842","https://openalex.org/W1991317571","https://openalex.org/W2017731185","https://openalex.org/W2029068643","https://openalex.org/W2042695548","https://openalex.org/W2057642934","https://openalex.org/W2071416171","https://openalex.org/W2081014948","https://openalex.org/W2085699581","https://openalex.org/W2101653461","https://openalex.org/W2106882534","https://openalex.org/W2115200200","https://openalex.org/W2131939771","https://openalex.org/W2135493049","https://openalex.org/W2170488050","https://openalex.org/W2171449346","https://openalex.org/W2288100729","https://openalex.org/W2310744089","https://openalex.org/W2724770615","https://openalex.org/W3199943451"],"related_works":["https://openalex.org/W2081880364","https://openalex.org/W2591912511","https://openalex.org/W2043451511","https://openalex.org/W1941518632","https://openalex.org/W417754039","https://openalex.org/W2600097745","https://openalex.org/W1179153962","https://openalex.org/W4416895616","https://openalex.org/W2169280102"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-11-14T11:04:58.165337","created_date":"2016-06-24T00:00:00"}