{"id":"https://openalex.org/W2015663276","doi":"https://doi.org/10.1099/mic.0.27966-0","title":"Genome Update: Protein secretion systems in 225 bacterial genomes","display_name":"Genome Update: Protein secretion systems in 225 bacterial genomes","publication_year":2005,"publication_date":"2005-04-01","ids":{"openalex":"https://openalex.org/W2015663276","doi":"https://doi.org/10.1099/mic.0.27966-0","mag":"2015663276","pmid":"https://pubmed.ncbi.nlm.nih.gov/15817770"},"language":"en","primary_location":{"id":"doi:10.1099/mic.0.27966-0","doi":"https://doi.org/10.1099/mic.0.27966-0","is_oa":false,"landing_page_url":"https://doi.org/10.1099/mic.0.27966-0","pdf_url":null,"source":{"id":"https://openalex.org/S196799759","display_name":"Microbiology","issn_l":"1350-0872","issn":["1350-0872","1465-2080"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-b","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310320497","host_organization_name":"Microbiology Society","host_organization_lineage":["https://openalex.org/P4310320497"],"host_organization_lineage_names":["Microbiology Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://orbit.dtu.dk/en/publications/a186cc7b-2dc0-4138-b5cd-10c2dd73ac74","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086711118","display_name":"Tim T. Binnewies","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Tim T. Binnewies","raw_affiliation_strings":["Center for Biological Sequence Analysis, BioCentrum-DTU, Building 208, The Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biological Sequence Analysis, BioCentrum-DTU, Building 208, The Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040006242","display_name":"Jannick Dyrl\u00f8v Bendtsen","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Jannick D. Bendtsen","raw_affiliation_strings":["Center for Biological Sequence Analysis, BioCentrum-DTU, Building 208, The Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biological Sequence Analysis, BioCentrum-DTU, Building 208, The Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041762815","display_name":"Peter F. Hallin","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Peter F. Hallin","raw_affiliation_strings":["Center for Biological Sequence Analysis, BioCentrum-DTU, Building 208, The Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biological Sequence Analysis, BioCentrum-DTU, Building 208, The Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000898134","display_name":"Natasja Nielsen","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Natasja Nielsen","raw_affiliation_strings":["Center for Biological Sequence Analysis, BioCentrum-DTU, Building 208, The Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biological Sequence Analysis, BioCentrum-DTU, Building 208, The Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044951602","display_name":"Trudy M. Wassenaar","orcid":"https://orcid.org/0000-0002-7024-1139","observed_orcids":["https://orcid.org/0000-0002-7024-1139"]},"institutions":[{"id":"https://openalex.org/I4210112926","display_name":"Molecular Microbiology and Genomics Consultants (Germany)","ror":"https://ror.org/026q2n359","country_code":"DE","type":"company","lineage":["https://openalex.org/I4210112926"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Trudy M. Wassenaar","raw_affiliation_strings":["Molecular Microbiology and Genomics Consultants, Zotzenheim, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular Microbiology and Genomics Consultants, Zotzenheim, Germany","institution_ids":["https://openalex.org/I4210112926"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063890493","display_name":"Martin Bastian Pedersen","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I38119467","display_name":"Chr. Hansen (Denmark)","ror":"https://ror.org/01mv6bt66","country_code":"DK","type":"company","lineage":["https://openalex.org/I2801134892","https://openalex.org/I38119467","https://openalex.org/I4210159963","https://openalex.org/I4405271692"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Martin Bastian Pedersen","raw_affiliation_strings":["Genomics & Strain Development, Chr. Hansen A/S, H\u00f8rsholm, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics & Strain Development, Chr. Hansen A/S, H\u00f8rsholm, Denmark","institution_ids":["https://openalex.org/I38119467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019813648","display_name":"Per Klemm","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Per Klemm","raw_affiliation_strings":["Microbial Adhesion Group, Center for Biomedical Microbiology, BioCentrum-DTU, Technical University of Denmark, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microbial Adhesion Group, Center for Biomedical Microbiology, BioCentrum-DTU, Technical University of Denmark, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013526952","display_name":"David Wayne Ussery","orcid":"https://orcid.org/0000-0003-3632-5512","observed_orcids":["https://orcid.org/0000-0003-3632-5512"]},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"David W. Ussery","raw_affiliation_strings":["Center for Biological Sequence Analysis, BioCentrum-DTU, Building 208, The Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biological Sequence Analysis, BioCentrum-DTU, Building 208, The Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.3328,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.58237324,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":94},"biblio":{"volume":"151","issue":"4","first_page":"1013","last_page":"1016"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9115999937057495,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9115999937057495,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10943","display_name":"Escherichia coli research studies","score":0.04600000008940697,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.01679999940097332,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/secretion-systems","display_name":"secretion systems","score":0.9919999837875366},{"id":"https://openalex.org/keywords/bacterial-genomes","display_name":"bacterial genomes","score":0.9610000252723694},{"id":"https://openalex.org/keywords/genome-wide-analysis","display_name":"genome-wide analysis","score":0.4869999885559082},{"id":"https://openalex.org/keywords/bacterial-virulence","display_name":"bacterial virulence","score":0.5080000162124634},{"id":"https://openalex.org/keywords/type-iii-secretion-system","display_name":"type III secretion system","score":0.6269999742507935},{"id":"https://openalex.org/keywords/type-iv-secretion-system","display_name":"type IV secretion system","score":0.8130000233650208},{"id":"https://openalex.org/keywords/type-ii-secretion-system","display_name":"type II secretion system","score":0.5920000076293945},{"id":"https://openalex.org/keywords/type-i-secretion-system","display_name":"type I secretion system","score":0.6499999761581421}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6275070309638977},{"id":"https://openalex.org/C144559511","wikidata":"https://www.wikidata.org/wiki/Q2986279","display_name":"Principal (computer security)","level":2,"score":0.5658468008041382},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.47964149713516235},{"id":"https://openalex.org/C49039625","wikidata":"https://www.wikidata.org/wiki/Q84230","display_name":"Secretion","level":2,"score":0.44139647483825684},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43869057297706604},{"id":"https://openalex.org/C3742359","wikidata":"https://www.wikidata.org/wiki/Q4839988","display_name":"Bacterial genome size","level":4,"score":0.42160463333129883},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.355802446603775},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.3490014970302582},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3384176194667816},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.30965495109558105},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.28341346979141235},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24121108651161194},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020560","descriptor_name":"Proteobacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020560","descriptor_name":"Proteobacteria","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1099/mic.0.27966-0","doi":"https://doi.org/10.1099/mic.0.27966-0","is_oa":false,"landing_page_url":"https://doi.org/10.1099/mic.0.27966-0","pdf_url":null,"source":{"id":"https://openalex.org/S196799759","display_name":"Microbiology","issn_l":"1350-0872","issn":["1350-0872","1465-2080"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-b","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310320497","host_organization_name":"Microbiology Society","host_organization_lineage":["https://openalex.org/P4310320497"],"host_organization_lineage_names":["Microbiology Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology","raw_type":"journal-article"},{"id":"pmid:15817770","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15817770","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology (Reading, England)","raw_type":"Journal Article"},{"id":"pmh:oai:pure.atira.dk:publications/a186cc7b-2dc0-4138-b5cd-10c2dd73ac74","doi":null,"is_oa":true,"landing_page_url":"https://orbit.dtu.dk/en/publications/a186cc7b-2dc0-4138-b5cd-10c2dd73ac74","pdf_url":null,"source":{"id":"https://openalex.org/S4306400705","display_name":"Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I96673099","host_organization_name":"Technical University of Denmark","host_organization_lineage":["https://openalex.org/I96673099"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Binnewies , T T , Bendtsen , J D , Hallin , P F , Nielsen , N , Wassenaar , T M , Pedersen , M B , Klemm , P & Ussery , D 2005 , ' Genome Update: Protein secretion systems in 225 bacterial genomes ' , Microbiology (United Kingdom) , vol. 151 , no. 4 , pp. 1013-1016 . https://doi.org/10.1099/mic.0.27966-0","raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:pure.atira.dk:publications/a186cc7b-2dc0-4138-b5cd-10c2dd73ac74","doi":null,"is_oa":true,"landing_page_url":"https://orbit.dtu.dk/en/publications/a186cc7b-2dc0-4138-b5cd-10c2dd73ac74","pdf_url":null,"source":{"id":"https://openalex.org/S4306400705","display_name":"Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I96673099","host_organization_name":"Technical University of Denmark","host_organization_lineage":["https://openalex.org/I96673099"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Binnewies , T T , Bendtsen , J D , Hallin , P F , Nielsen , N , Wassenaar , T M , Pedersen , M B , Klemm , P & Ussery , D 2005 , ' Genome Update: Protein secretion systems in 225 bacterial genomes ' , Microbiology (United Kingdom) , vol. 151 , no. 4 , pp. 1013-1016 . https://doi.org/10.1099/mic.0.27966-0","raw_type":"article"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W2026158782","https://openalex.org/W2081037209","https://openalex.org/W2094823810","https://openalex.org/W2095619657","https://openalex.org/W2110626418","https://openalex.org/W2116574739","https://openalex.org/W2123799144","https://openalex.org/W2142736798","https://openalex.org/W6999277025"],"related_works":["https://openalex.org/W2065344639","https://openalex.org/W2984023125","https://openalex.org/W2417734779","https://openalex.org/W2080110113","https://openalex.org/W4285267206","https://openalex.org/W7064403092","https://openalex.org/W3216063995","https://openalex.org/W1996142505","https://openalex.org/W2073697443","https://openalex.org/W3215707229"],"abstract_inverted_index":null,"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}