{"id":"https://openalex.org/W2014620714","doi":"https://doi.org/10.1109/tcbb.2013.76","title":"An Adaptive Window Length Strategy for Eukaryotic CDS Prediction","display_name":"An Adaptive Window Length Strategy for Eukaryotic CDS Prediction","publication_year":2013,"publication_date":"2013-07-02","ids":{"openalex":"https://openalex.org/W2014620714","doi":"https://doi.org/10.1109/tcbb.2013.76","mag":"2014620714","pmid":"https://pubmed.ncbi.nlm.nih.gov/24384711"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2013.76","doi":"https://doi.org/10.1109/tcbb.2013.76","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2013.76","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","ccf-b","cwts-core","dongbi-b","doyens","jufo-2","medline","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054874866","display_name":"Devendra Kumar Shakya","orcid":"https://orcid.org/0000-0003-2414-9339","observed_orcids":["https://orcid.org/0000-0003-2414-9339"]},"institutions":[{"id":"https://openalex.org/I4210146312","display_name":"Sambalpur University Institute of Information Technology","ror":"https://ror.org/05jnwy894","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210146312"]},{"id":"https://openalex.org/I4405260237","display_name":"Sitamarhi Institute of Technology","ror":"https://ror.org/03f4sf198","country_code":"IN","type":"government","lineage":["https://openalex.org/I4405260237"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Devendra Kumar Shakya","raw_affiliation_strings":["Samrat Ashok Technological Institute, Vidisha","Department of Biomedical Engineering, Samrat Ashok Technological Institute, Vidisha, MP, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Samrat Ashok Technological Institute, Vidisha","institution_ids":["https://openalex.org/I4210146312","https://openalex.org/I4405260237"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Samrat Ashok Technological Institute, Vidisha, MP, India","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083394108","display_name":"Rajiv Saxena","orcid":"https://orcid.org/0000-0001-7500-4629","observed_orcids":["https://orcid.org/0000-0001-7500-4629"]},"institutions":[{"id":"https://openalex.org/I25205351","display_name":"Jaypee University of Engineering and Technology, Guna","ror":"https://ror.org/040jmyh64","country_code":"IN","type":"education","lineage":["https://openalex.org/I25205351"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Rajiv Saxena","raw_affiliation_strings":["Jaypee University of Engineering and Technology, Raghogarh, Guna","Department of Electronics and Communication Engineering, Jaypee University of Engineering and Technology, Raghogarh, Guna, MP, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jaypee University of Engineering and Technology, Raghogarh, Guna","institution_ids":["https://openalex.org/I25205351"]},{"raw_affiliation_string":"Department of Electronics and Communication Engineering, Jaypee University of Engineering and Technology, Raghogarh, Guna, MP, India","institution_ids":["https://openalex.org/I25205351"]}]},{"author_position":"last","author":{"id":null,"display_name":"Sanjeev Narayan Sharma","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210146312","display_name":"Sambalpur University Institute of Information Technology","ror":"https://ror.org/05jnwy894","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210146312"]},{"id":"https://openalex.org/I4405260237","display_name":"Sitamarhi Institute of Technology","ror":"https://ror.org/03f4sf198","country_code":"IN","type":"government","lineage":["https://openalex.org/I4405260237"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sanjeev Narayan Sharma","raw_affiliation_strings":["Samrat Ashok Technological Institute, Vidisha","Department of Electronics and Communication Engineering, Samrat Ashok Technological Institute, Vidisha, MP, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Samrat Ashok Technological Institute, Vidisha","institution_ids":["https://openalex.org/I4210146312","https://openalex.org/I4405260237"]},{"raw_affiliation_string":"Department of Electronics and Communication Engineering, Samrat Ashok Technological Institute, Vidisha, MP, India","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2645,"currency":"USD","value_usd":2645},"apc_paid":null,"fwci":0.8798,"has_fulltext":false,"cited_by_count":50,"citation_normalized_percentile":{"value":0.69983657,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"10","issue":"5","first_page":"1241","last_page":"1252"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.006200000178068876,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.00139999995008111,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/eukaryotic-dna","display_name":"eukaryotic DNA","score":0.871999979019165},{"id":"https://openalex.org/keywords/adaptive-window-length","display_name":"adaptive window length","score":0.902999997138977},{"id":"https://openalex.org/keywords/short-time-fourier-transform","display_name":"short-time Fourier transform","score":0.9309999942779541},{"id":"https://openalex.org/keywords/noncoding-regions","display_name":"non-coding regions","score":0.6669999957084656}],"concepts":[{"id":"https://openalex.org/C166386157","wikidata":"https://www.wikidata.org/wiki/Q1477735","display_name":"Short-time Fourier transform","level":4,"score":0.7650245428085327},{"id":"https://openalex.org/C140101238","wikidata":"https://www.wikidata.org/wiki/Q1404885","display_name":"Window function","level":3,"score":0.6364628076553345},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.6346136331558228},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6127071380615234},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6120966076850891},{"id":"https://openalex.org/C102519508","wikidata":"https://www.wikidata.org/wiki/Q6520159","display_name":"Fourier transform","level":2,"score":0.5430660843849182},{"id":"https://openalex.org/C2778751112","wikidata":"https://www.wikidata.org/wiki/Q835016","display_name":"Window (computing)","level":2,"score":0.4453651010990143},{"id":"https://openalex.org/C102392041","wikidata":"https://www.wikidata.org/wiki/Q592860","display_name":"Sliding window protocol","level":3,"score":0.4149523377418518},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3639548122882843},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.28742098808288574},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2655874192714691},{"id":"https://openalex.org/C203024314","wikidata":"https://www.wikidata.org/wiki/Q1365258","display_name":"Fourier analysis","level":3,"score":0.1969524323940277},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.11548611521720886},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.07635217905044556},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2013.76","doi":"https://doi.org/10.1109/tcbb.2013.76","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2013.76","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","ccf-b","cwts-core","dongbi-b","doyens","jufo-2","medline","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24384711","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24384711","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W18046889","https://openalex.org/W1498183065","https://openalex.org/W1535749512","https://openalex.org/W1540446958","https://openalex.org/W1581066745","https://openalex.org/W1592365591","https://openalex.org/W1966833356","https://openalex.org/W1967519026","https://openalex.org/W1978193381","https://openalex.org/W1994017531","https://openalex.org/W2021020563","https://openalex.org/W2045510682","https://openalex.org/W2058730888","https://openalex.org/W2077263906","https://openalex.org/W2077745293","https://openalex.org/W2090388864","https://openalex.org/W2101159760","https://openalex.org/W2110564440","https://openalex.org/W2118479439","https://openalex.org/W2123769889","https://openalex.org/W2130395351","https://openalex.org/W2130429766","https://openalex.org/W2135120651","https://openalex.org/W2136826997","https://openalex.org/W2137761415","https://openalex.org/W2137938022","https://openalex.org/W2149548305","https://openalex.org/W2157859997","https://openalex.org/W2164549078","https://openalex.org/W4302067267"],"related_works":["https://openalex.org/W4381620800","https://openalex.org/W2075576093","https://openalex.org/W2137938022","https://openalex.org/W2163129680","https://openalex.org/W3186932966","https://openalex.org/W173410059","https://openalex.org/W1500180044","https://openalex.org/W2100868011","https://openalex.org/W2097633925","https://openalex.org/W2119421970"],"abstract_inverted_index":{"Signal":[0],"processing-based":[1,72],"algorithms":[2,63],"for":[3,24,87,147],"identification":[4,59,90],"of":[5,18,43,49,61,84,91,96,111,138],"coding":[6,52,105],"sequences":[7,86],"(CDS)":[8],"in":[9,21,82,104,115],"eukaryotes":[10],"are":[11],"non-data":[12],"driven":[13],"and":[14,53],"exploit":[15],"the":[16,47,50,58,78,89,97,109,116,119,136],"presence":[17],"three-base":[19,92],"periodicity":[20,28],"these":[22],"regions":[23,55,106],"their":[25],"detection.":[26],"Three-base":[27],"is":[29,64,74,122],"commonly":[30],"detected":[31],"using":[32],"short":[33],"time":[34],"Fourier":[35],"transform":[36],"(STFT)":[37],"that":[38],"uses":[39],"a":[40,69],"window":[41,79,98,120],"function":[42,99],"fixed":[44],"length.":[45],"As":[46],"length":[48,80,95,121],"protein":[51],"noncoding":[54,117],"varies":[56],"widely,":[57],"accuracy":[60],"STFT-based":[62],"poor.":[65],"In":[66],"this":[67,126,139],"paper,":[68],"novel":[70],"signal":[71],"algorithm":[73,140],"developed":[75],"by":[76],"enabling":[77],"adaptation":[81],"STFT":[83],"DNA":[85],"improving":[88],"periodicity.":[93],"The":[94],"has":[100],"been":[101],"made":[102],"adaptive":[103],"to":[107,124],"maximize":[108],"magnitude":[110],"period-3":[112],"measure,":[113],"whereas":[114],"regions,":[118],"tailored":[123],"minimize":[125],"measure.":[127],"Simulation":[128],"results":[129],"on":[130],"bench":[131],"mark":[132],"data":[133],"sets":[134],"demonstrate":[135],"advantage":[137],"when":[141],"compared":[142],"with":[143],"other":[144],"non-data-driven":[145],"methods":[146],"CDS":[148],"prediction.":[149]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2016-06-24T00:00:00"}